Clone BO13846 Report

Search the DGRC for BO13846

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS9-RA
Protein status:BO13846.pep: validated full length
Sequenced Size:1219

Clone Sequence Records

BO13846.3prime Sequence

826 bp (760 high quality bases) assembled on 2006-05-08

> BO13846.3prime
ATGGTCTAGAAAGCTTGCGCGCTTCTTCCACGTGTACTTGCGGCGTGCTC
CTTCCTGCCCGAACTTCTTACGCTCCCGACGGCGATAGTCACGTGTCAGC
AGGCCGGCCAGACGCATTGACTCAATCATCTCTTGATCGACAAAGCTGCG
CAAACTCATGGCGATGCCCCAGCGGATGGCTCCAGCCTGACCGGAAGGTC
CGCCTCCCTCGACGTTGGCCTCCACATCGACTTTGCCCAGCAGCTCGCTA
AATTGCAGCGGGAAGAGCAGCTGTTCTCTGCAGTTTTCGTCCTCAAAGTA
TGAGATATCCTTTCCATTAATGCTGATTTTTCCTGTTCCGGGTAGCCGCA
CTGTGACATCGGCTCTAGCAGTTTTGCGCAGGCACTCGTAGGTGGTGATG
TACTGGCGACCCTCTTCATCGATCCTTGGTTTGGGCACCTCCAGCTGCTT
GGACTGGTCCATCAGCGGTTTCATGTATCGCTCGATGAATGCTTTGCTCT
TGTAAGCATATGGCGATGCGATCAGGCGATCCATGGAGTTGGTAAAGTTG
GAGTATTCGATATCGGCAATGCTCTCAACTAGCAAAAGTTCCAACTGGTC
CTTGGGCAGCAGCTGAAAGCCGGCAATCTCAAGTTTTTGGTTCTCATCGG
GTTTATTGCCGCGCCGTAGCATGCGCTCCTCCAGATCCGCCAGCTTGTTA
GTTTCTTCTACAATGTCATGAAGCAGTTGGAAGAAGTTGGGTTTGCCGGT
GTAGAACATGCTGTGGAATGGTCTGCCCGTCTCATCGAATTCCGCAGCCT
TGCGGGCGGGGAAGACAACCTCGGGT

BO13846.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2957-PA 1188 mRpS9-RA 378..1185 826..19 4040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS9-RA 1293 CG2957-RA 413..1220 826..19 4040 100 Minus
CG10092-RB 2748 CG10092-RB 2107..2272 108..273 830 100 Plus
CG10092-RB 2748 CG10092-RB 1948..2037 19..108 450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7901384..7901744 271..631 1805 100 Plus
3R 32079331 3R 7889509..7889674 108..273 830 100 Plus
3R 32079331 3R 7902006..7902115 717..826 550 100 Plus
3R 32079331 3R 7889350..7889439 19..108 450 100 Plus
3R 32079331 3R 7901810..7901895 632..717 430 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:29:05 has no hits.

BO13846.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:38 Download gff for BO13846.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS9-PA 378..1188 18..826 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:40 Download gff for BO13846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2957-PA 378..1188 18..826 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:44 Download gff for BO13846.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 413..1220 19..826 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:21:40 Download gff for BO13846.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 413..1220 19..826 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:21:40 Download gff for BO13846.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7889350..7889438 19..107 100 <- Plus
3R 7889509..7889671 108..270 100 <- Plus
3R 7901384..7901744 271..631 100 <- Plus
3R 7901810..7901895 632..717 100 <- Plus
3R 7902007..7902115 718..826 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:44 Download gff for BO13846.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3727729..3727837 718..826 100   Plus
arm_3R 3715072..3715160 19..107 100 <- Plus
arm_3R 3715231..3715393 108..270 100 <- Plus
arm_3R 3727106..3727466 271..631 100 <- Plus
arm_3R 3727532..3727617 632..717 100 <- Plus

BO13846.5prime Sequence

760 bp (717 high quality bases) assembled on 2006-05-08

> BO13846.5prime
GAAGTTATCAGTCGACATGGCACTGCGTGTTTTTGGCTTAAATATAGTAA
AAAATAACAGGAATCTGCTGCAAAATGCATGCAAATCCAGGGCACCGATG
CCATGCTACATGGCAGCGGCTCCATTTGCCACCGATGTGACCGTCCAGGC
TGCTCCGGCGGCTGTCCAGAAGCAAAGGGTGAGCAAGGCCATGCGGGCGT
ACCTGAAAAGAGCCACCGAACACGACGAGTTCATGAAGACCCAGCACCTG
GAGTTCCAGATCGGAAAGCGGCACCTGGCCAACATGATGGGCGCCGATGC
GGAGACGTTTACCCAGGAGGACATAGACGAGGCGATATCCTATCTGTTCC
CTTCCGGATTGTACGACCAAAAGGCCCGGCCGGCTATGAAGTCACCCGAG
GTTGTCTTCCCCGCCCGCAAGGCTGCGGAATTCGATGAGACGGGCAGACC
ATTCCACAGCATGTTCTACACCGGCAAACCCAACTTCTTCCAACTGCTTC
ATGACATTGTAGAAGAAACTAACAAGCTGGCGGATCTGGAGGAGCGCATG
CTACGGCGCGGCAATAAACCCGATGAGAACCAAAAACTTGAGATTGCCGG
CTTTCAGCTGCTGCCCAAGGACCAGTTGGAACTTTTGCTAGTTGAGAGCA
TTTGCCGATATCGAATACTCCAACTTTACCAACTCCATGGATCGCCTGAT
CGCATCGCCATATGCTTACAAGAGCAAAGCATTCATCGAGCGATACATGA
AACCGCTGAT

BO13846.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2957-PA 1188 mRpS9-RA 1..636 17..652 3180 100 Plus
CG2957-PA 1188 mRpS9-RA 635..743 652..760 545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS9-RA 1293 CG2957-RA 36..778 17..760 3695 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7902238..7902455 329..112 1090 100 Minus
3R 32079331 3R 7902006..7902180 503..329 875 100 Minus
3R 32079331 3R 7901574..7901744 760..589 810 99.4 Minus
3R 32079331 3R 7902536..7902632 113..17 485 100 Minus
3R 32079331 3R 7901810..7901895 588..503 430 100 Minus
Blast to na_te.dros performed on 2015-02-11 14:24:52 has no hits.

BO13846.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:39 Download gff for BO13846.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS9-PA 1..743 17..760 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:41 Download gff for BO13846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2957-PA 1..743 17..760 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:16:00 Download gff for BO13846.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 33..778 10..760 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:36 Download gff for BO13846.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 33..778 10..760 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:36 Download gff for BO13846.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7901574..7901744 589..760 99 <- Minus
3R 7901810..7901895 503..588 100 <- Minus
3R 7902007..7902180 329..502 100 <- Minus
3R 7902239..7902454 113..328 100 <- Minus
3R 7902537..7902635 10..112 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:16:00 Download gff for BO13846.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3727296..3727466 589..760 99 <- Minus
arm_3R 3727532..3727617 503..588 100 <- Minus
arm_3R 3727729..3727902 329..502 100 <- Minus
arm_3R 3727961..3728176 113..328 100 <- Minus
arm_3R 3728259..3728357 10..112 96   Minus

BO13846.complete Sequence

1219 bp assembled on 2006-10-11

GenBank Submission: FJ632948

> BO13846.complete
GAAGTTATCAGTCGACATGGCACTGCGTGTTTTTGGCTTAAATATAGTAA
AAAATAACAGGAATCTGCTGCAAAATGCATGCAAATCCAGGGCACCGATG
CCATGCTACATGGCAGCGGCTCCATTTGCCACCGATGTGACCGTCCAGGC
TGCTCCGGCGGCTGTCCAGAAGCAAAGGGTGAGCAAGGCCATGCGGGCGT
ACCTGAAAAGAGCCACCGAACACGACGAGTTCATGAAGACCCAGCACCTG
GAGTTCCAGATCGGAAAGCGGCACCTGGCCAACATGATGGGCGCCGATGC
GGAGACGTTTACCCAGGAGGACATAGACGAGGCGATATCCTATCTGTTCC
CTTCCGGATTGTACGACCAAAAGGCCCGGCCGGCTATGAAGTCACCCGAG
GTTGTCTTCCCCGCCCGCAAGGCTGCGGAATTCGATGAGACGGGCAGACC
ATTCCACAGCATGTTCTACACCGGCAAACCCAACTTCTTCCAACTGCTTC
ATGACATTGTAGAAGAAACTAACAAGCTGGCGGATCTGGAGGAGCGCATG
CTACGGCGCGGCAATAAACCCGATGAGAACCAAAAACTTGAGATTGCCGG
CTTTCAGCTGCTGCCCAAGGACCAGTTGGAACTTTTGCTAGTTGAGAGCA
TTGCCGATATCGAATACTCCAACTTTACCAACTCCATGGATCGCCTGATC
GCATCGCCATATGCTTACAAGAGCAAAGCATTCATCGAGCGATACATGAA
ACCGCTGATGGACCAGTCCAAGCAGCTGGAGGTGCCCAAACCAAGGATCG
ATGAAGAGGGTCGCCAGTACATCACCACCTACGAGTGCCTGCGCAAAACT
GCTAGAGCCGATGTCACAGTGCGGCTACCCGGAACAGGAAAAATCAGCAT
TAATGGAAAGGATATCTCATACTTTGAGGACGAAAACTGCAGAGAACAGC
TGCTCTTCCCGCTGCAATTTAGCGAGCTGCTGGGCAAAGTCGATGTGGAG
GCCAACGTCGAGGGAGGCGGACCTTCCGGTCAGGCTGGAGCCATCCGCTG
GGGCATCGCCATGAGTTTGCGCAGCTTTGTCGATCAAGAGATGATTGAGT
CAATGCGTCTGGCCGGCCTGCTGACACGTGACTATCGCCGTCGGGAGCGT
AAGAAGTTCGGGCAGGAAGGAGCACGCCGCAAGTACACGTGGAAGAAGCG
CGCAAGCTTTCTAGACCAT

BO13846.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS9-RA 1188 CG2957-PA 1..1185 17..1201 5925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS9-RA 1293 CG2957-RA 36..1220 17..1201 5925 100 Plus
CG10092-RB 2748 CG10092-RB 2107..2272 1112..947 830 100 Minus
CG10092-RB 2748 CG10092-RB 1948..2037 1201..1112 450 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7901384..7901744 949..589 1805 100 Minus
3R 32079331 3R 7902238..7902455 329..112 1090 100 Minus
3R 32079331 3R 7902006..7902180 503..329 875 100 Minus
3R 32079331 3R 7889509..7889674 1112..947 830 100 Minus
3R 32079331 3R 7902536..7902632 113..17 485 100 Minus
3R 32079331 3R 7889350..7889439 1201..1112 450 100 Minus
3R 32079331 3R 7901810..7901895 588..503 430 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:26:48 has no hits.

BO13846.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:25 Download gff for BO13846.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 1..1188 17..1202 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:50 Download gff for BO13846.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 31..1215 17..1203 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:44 Download gff for BO13846.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 36..1220 17..1203 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:25 Download gff for BO13846.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 28..1215 10..1201 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:23 Download gff for BO13846.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 36..1220 17..1203 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:23 Download gff for BO13846.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7902007..7902180 329..502 100 <- Minus
3R 7902239..7902454 113..328 100 <- Minus
3R 7889509..7889671 950..1112 100 <- Minus
3R 7902537..7902632 17..112 100   Minus
3R 7889348..7889438 1113..1203 97 <- Minus
3R 7901384..7901744 589..949 100 <- Minus
3R 7901810..7901895 503..588 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:44 Download gff for BO13846.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3727961..3728176 113..328 100 <- Minus
arm_3R 3715070..3715160 1113..1203 97 <- Minus
arm_3R 3715231..3715393 950..1112 100 <- Minus
arm_3R 3727106..3727466 589..949 100 <- Minus
arm_3R 3727532..3727617 503..588 100 <- Minus
arm_3R 3727729..3727902 329..502 100 <- Minus
arm_3R 3728259..3728354 17..112 100   Minus

BO13846.pep Sequence

Translation from 16 to 1219

> BO13846.pep
MALRVFGLNIVKNNRNLLQNACKSRAPMPCYMAAAPFATDVTVQAAPAAV
QKQRVSKAMRAYLKRATEHDEFMKTQHLEFQIGKRHLANMMGADAETFTQ
EDIDEAISYLFPSGLYDQKARPAMKSPEVVFPARKAAEFDETGRPFHSMF
YTGKPNFFQLLHDIVEETNKLADLEERMLRRGNKPDENQKLEIAGFQLLP
KDQLELLLVESIADIEYSNFTNSMDRLIASPYAYKSKAFIERYMKPLMDQ
SKQLEVPKPRIDEEGRQYITTYECLRKTARADVTVRLPGTGKISINGKDI
SYFEDENCREQLLFPLQFSELLGKVDVEANVEGGGPSGQAGAIRWGIAMS
LRSFVDQEMIESMRLAGLLTRDYRRRERKKFGQEGARRKYTWKKRASFLD
H

BO13846.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS9-PA 395 CG2957-PA 1..395 1..395 2036 100 Plus