Clone Sequence Records
BO13846.3prime Sequence
826 bp (760 high quality bases) assembled on 2006-05-08
> BO13846.3prime
ATGGTCTAGAAAGCTTGCGCGCTTCTTCCACGTGTACTTGCGGCGTGCTC
CTTCCTGCCCGAACTTCTTACGCTCCCGACGGCGATAGTCACGTGTCAGC
AGGCCGGCCAGACGCATTGACTCAATCATCTCTTGATCGACAAAGCTGCG
CAAACTCATGGCGATGCCCCAGCGGATGGCTCCAGCCTGACCGGAAGGTC
CGCCTCCCTCGACGTTGGCCTCCACATCGACTTTGCCCAGCAGCTCGCTA
AATTGCAGCGGGAAGAGCAGCTGTTCTCTGCAGTTTTCGTCCTCAAAGTA
TGAGATATCCTTTCCATTAATGCTGATTTTTCCTGTTCCGGGTAGCCGCA
CTGTGACATCGGCTCTAGCAGTTTTGCGCAGGCACTCGTAGGTGGTGATG
TACTGGCGACCCTCTTCATCGATCCTTGGTTTGGGCACCTCCAGCTGCTT
GGACTGGTCCATCAGCGGTTTCATGTATCGCTCGATGAATGCTTTGCTCT
TGTAAGCATATGGCGATGCGATCAGGCGATCCATGGAGTTGGTAAAGTTG
GAGTATTCGATATCGGCAATGCTCTCAACTAGCAAAAGTTCCAACTGGTC
CTTGGGCAGCAGCTGAAAGCCGGCAATCTCAAGTTTTTGGTTCTCATCGG
GTTTATTGCCGCGCCGTAGCATGCGCTCCTCCAGATCCGCCAGCTTGTTA
GTTTCTTCTACAATGTCATGAAGCAGTTGGAAGAAGTTGGGTTTGCCGGT
GTAGAACATGCTGTGGAATGGTCTGCCCGTCTCATCGAATTCCGCAGCCT
TGCGGGCGGGGAAGACAACCTCGGGT
BO13846.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2957-PA | 1188 | mRpS9-RA | 378..1185 | 826..19 | 4040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS9-RA | 1293 | CG2957-RA | 413..1220 | 826..19 | 4040 | 100 | Minus |
CG10092-RB | 2748 | CG10092-RB | 2107..2272 | 108..273 | 830 | 100 | Plus |
CG10092-RB | 2748 | CG10092-RB | 1948..2037 | 19..108 | 450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7901384..7901744 | 271..631 | 1805 | 100 | Plus |
3R | 32079331 | 3R | 7889509..7889674 | 108..273 | 830 | 100 | Plus |
3R | 32079331 | 3R | 7902006..7902115 | 717..826 | 550 | 100 | Plus |
3R | 32079331 | 3R | 7889350..7889439 | 19..108 | 450 | 100 | Plus |
3R | 32079331 | 3R | 7901810..7901895 | 632..717 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:29:05 has no hits.
BO13846.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:38 Download gff for
BO13846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS9-PA | 378..1188 | 18..826 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:40 Download gff for
BO13846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2957-PA | 378..1188 | 18..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:44 Download gff for
BO13846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS9-RA | 413..1220 | 19..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:21:40 Download gff for
BO13846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS9-RA | 413..1220 | 19..826 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:21:40 Download gff for
BO13846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7889350..7889438 | 19..107 | 100 | <- | Plus |
3R | 7889509..7889671 | 108..270 | 100 | <- | Plus |
3R | 7901384..7901744 | 271..631 | 100 | <- | Plus |
3R | 7901810..7901895 | 632..717 | 100 | <- | Plus |
3R | 7902007..7902115 | 718..826 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:44 Download gff for
BO13846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3727729..3727837 | 718..826 | 100 | | Plus |
arm_3R | 3715072..3715160 | 19..107 | 100 | <- | Plus |
arm_3R | 3715231..3715393 | 108..270 | 100 | <- | Plus |
arm_3R | 3727106..3727466 | 271..631 | 100 | <- | Plus |
arm_3R | 3727532..3727617 | 632..717 | 100 | <- | Plus |
BO13846.5prime Sequence
760 bp (717 high quality bases) assembled on 2006-05-08
> BO13846.5prime
GAAGTTATCAGTCGACATGGCACTGCGTGTTTTTGGCTTAAATATAGTAA
AAAATAACAGGAATCTGCTGCAAAATGCATGCAAATCCAGGGCACCGATG
CCATGCTACATGGCAGCGGCTCCATTTGCCACCGATGTGACCGTCCAGGC
TGCTCCGGCGGCTGTCCAGAAGCAAAGGGTGAGCAAGGCCATGCGGGCGT
ACCTGAAAAGAGCCACCGAACACGACGAGTTCATGAAGACCCAGCACCTG
GAGTTCCAGATCGGAAAGCGGCACCTGGCCAACATGATGGGCGCCGATGC
GGAGACGTTTACCCAGGAGGACATAGACGAGGCGATATCCTATCTGTTCC
CTTCCGGATTGTACGACCAAAAGGCCCGGCCGGCTATGAAGTCACCCGAG
GTTGTCTTCCCCGCCCGCAAGGCTGCGGAATTCGATGAGACGGGCAGACC
ATTCCACAGCATGTTCTACACCGGCAAACCCAACTTCTTCCAACTGCTTC
ATGACATTGTAGAAGAAACTAACAAGCTGGCGGATCTGGAGGAGCGCATG
CTACGGCGCGGCAATAAACCCGATGAGAACCAAAAACTTGAGATTGCCGG
CTTTCAGCTGCTGCCCAAGGACCAGTTGGAACTTTTGCTAGTTGAGAGCA
TTTGCCGATATCGAATACTCCAACTTTACCAACTCCATGGATCGCCTGAT
CGCATCGCCATATGCTTACAAGAGCAAAGCATTCATCGAGCGATACATGA
AACCGCTGAT
BO13846.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2957-PA | 1188 | mRpS9-RA | 1..636 | 17..652 | 3180 | 100 | Plus |
CG2957-PA | 1188 | mRpS9-RA | 635..743 | 652..760 | 545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:24:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS9-RA | 1293 | CG2957-RA | 36..778 | 17..760 | 3695 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7902238..7902455 | 329..112 | 1090 | 100 | Minus |
3R | 32079331 | 3R | 7902006..7902180 | 503..329 | 875 | 100 | Minus |
3R | 32079331 | 3R | 7901574..7901744 | 760..589 | 810 | 99.4 | Minus |
3R | 32079331 | 3R | 7902536..7902632 | 113..17 | 485 | 100 | Minus |
3R | 32079331 | 3R | 7901810..7901895 | 588..503 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:24:52 has no hits.
BO13846.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:39 Download gff for
BO13846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS9-PA | 1..743 | 17..760 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:41 Download gff for
BO13846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2957-PA | 1..743 | 17..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:16:00 Download gff for
BO13846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS9-RA | 33..778 | 10..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:36 Download gff for
BO13846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS9-RA | 33..778 | 10..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:36 Download gff for
BO13846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7901574..7901744 | 589..760 | 99 | <- | Minus |
3R | 7901810..7901895 | 503..588 | 100 | <- | Minus |
3R | 7902007..7902180 | 329..502 | 100 | <- | Minus |
3R | 7902239..7902454 | 113..328 | 100 | <- | Minus |
3R | 7902537..7902635 | 10..112 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:16:00 Download gff for
BO13846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3727296..3727466 | 589..760 | 99 | <- | Minus |
arm_3R | 3727532..3727617 | 503..588 | 100 | <- | Minus |
arm_3R | 3727729..3727902 | 329..502 | 100 | <- | Minus |
arm_3R | 3727961..3728176 | 113..328 | 100 | <- | Minus |
arm_3R | 3728259..3728357 | 10..112 | 96 | | Minus |
BO13846.complete Sequence
1219 bp assembled on 2006-10-11
GenBank Submission: FJ632948
> BO13846.complete
GAAGTTATCAGTCGACATGGCACTGCGTGTTTTTGGCTTAAATATAGTAA
AAAATAACAGGAATCTGCTGCAAAATGCATGCAAATCCAGGGCACCGATG
CCATGCTACATGGCAGCGGCTCCATTTGCCACCGATGTGACCGTCCAGGC
TGCTCCGGCGGCTGTCCAGAAGCAAAGGGTGAGCAAGGCCATGCGGGCGT
ACCTGAAAAGAGCCACCGAACACGACGAGTTCATGAAGACCCAGCACCTG
GAGTTCCAGATCGGAAAGCGGCACCTGGCCAACATGATGGGCGCCGATGC
GGAGACGTTTACCCAGGAGGACATAGACGAGGCGATATCCTATCTGTTCC
CTTCCGGATTGTACGACCAAAAGGCCCGGCCGGCTATGAAGTCACCCGAG
GTTGTCTTCCCCGCCCGCAAGGCTGCGGAATTCGATGAGACGGGCAGACC
ATTCCACAGCATGTTCTACACCGGCAAACCCAACTTCTTCCAACTGCTTC
ATGACATTGTAGAAGAAACTAACAAGCTGGCGGATCTGGAGGAGCGCATG
CTACGGCGCGGCAATAAACCCGATGAGAACCAAAAACTTGAGATTGCCGG
CTTTCAGCTGCTGCCCAAGGACCAGTTGGAACTTTTGCTAGTTGAGAGCA
TTGCCGATATCGAATACTCCAACTTTACCAACTCCATGGATCGCCTGATC
GCATCGCCATATGCTTACAAGAGCAAAGCATTCATCGAGCGATACATGAA
ACCGCTGATGGACCAGTCCAAGCAGCTGGAGGTGCCCAAACCAAGGATCG
ATGAAGAGGGTCGCCAGTACATCACCACCTACGAGTGCCTGCGCAAAACT
GCTAGAGCCGATGTCACAGTGCGGCTACCCGGAACAGGAAAAATCAGCAT
TAATGGAAAGGATATCTCATACTTTGAGGACGAAAACTGCAGAGAACAGC
TGCTCTTCCCGCTGCAATTTAGCGAGCTGCTGGGCAAAGTCGATGTGGAG
GCCAACGTCGAGGGAGGCGGACCTTCCGGTCAGGCTGGAGCCATCCGCTG
GGGCATCGCCATGAGTTTGCGCAGCTTTGTCGATCAAGAGATGATTGAGT
CAATGCGTCTGGCCGGCCTGCTGACACGTGACTATCGCCGTCGGGAGCGT
AAGAAGTTCGGGCAGGAAGGAGCACGCCGCAAGTACACGTGGAAGAAGCG
CGCAAGCTTTCTAGACCAT
BO13846.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS9-RA | 1188 | CG2957-PA | 1..1185 | 17..1201 | 5925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS9-RA | 1293 | CG2957-RA | 36..1220 | 17..1201 | 5925 | 100 | Plus |
CG10092-RB | 2748 | CG10092-RB | 2107..2272 | 1112..947 | 830 | 100 | Minus |
CG10092-RB | 2748 | CG10092-RB | 1948..2037 | 1201..1112 | 450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7901384..7901744 | 949..589 | 1805 | 100 | Minus |
3R | 32079331 | 3R | 7902238..7902455 | 329..112 | 1090 | 100 | Minus |
3R | 32079331 | 3R | 7902006..7902180 | 503..329 | 875 | 100 | Minus |
3R | 32079331 | 3R | 7889509..7889674 | 1112..947 | 830 | 100 | Minus |
3R | 32079331 | 3R | 7902536..7902632 | 113..17 | 485 | 100 | Minus |
3R | 32079331 | 3R | 7889350..7889439 | 1201..1112 | 450 | 100 | Minus |
3R | 32079331 | 3R | 7901810..7901895 | 588..503 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:26:48 has no hits.
BO13846.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:25 Download gff for
BO13846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS9-RA | 1..1188 | 17..1202 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:50 Download gff for
BO13846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS9-RA | 31..1215 | 17..1203 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:44 Download gff for
BO13846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS9-RA | 36..1220 | 17..1203 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:25 Download gff for
BO13846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS9-RA | 28..1215 | 10..1201 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:23 Download gff for
BO13846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS9-RA | 36..1220 | 17..1203 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:23 Download gff for
BO13846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7902007..7902180 | 329..502 | 100 | <- | Minus |
3R | 7902239..7902454 | 113..328 | 100 | <- | Minus |
3R | 7889509..7889671 | 950..1112 | 100 | <- | Minus |
3R | 7902537..7902632 | 17..112 | 100 | | Minus |
3R | 7889348..7889438 | 1113..1203 | 97 | <- | Minus |
3R | 7901384..7901744 | 589..949 | 100 | <- | Minus |
3R | 7901810..7901895 | 503..588 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:44 Download gff for
BO13846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3727961..3728176 | 113..328 | 100 | <- | Minus |
arm_3R | 3715070..3715160 | 1113..1203 | 97 | <- | Minus |
arm_3R | 3715231..3715393 | 950..1112 | 100 | <- | Minus |
arm_3R | 3727106..3727466 | 589..949 | 100 | <- | Minus |
arm_3R | 3727532..3727617 | 503..588 | 100 | <- | Minus |
arm_3R | 3727729..3727902 | 329..502 | 100 | <- | Minus |
arm_3R | 3728259..3728354 | 17..112 | 100 | | Minus |
BO13846.pep Sequence
Translation from 16 to 1219
> BO13846.pep
MALRVFGLNIVKNNRNLLQNACKSRAPMPCYMAAAPFATDVTVQAAPAAV
QKQRVSKAMRAYLKRATEHDEFMKTQHLEFQIGKRHLANMMGADAETFTQ
EDIDEAISYLFPSGLYDQKARPAMKSPEVVFPARKAAEFDETGRPFHSMF
YTGKPNFFQLLHDIVEETNKLADLEERMLRRGNKPDENQKLEIAGFQLLP
KDQLELLLVESIADIEYSNFTNSMDRLIASPYAYKSKAFIERYMKPLMDQ
SKQLEVPKPRIDEEGRQYITTYECLRKTARADVTVRLPGTGKISINGKDI
SYFEDENCREQLLFPLQFSELLGKVDVEANVEGGGPSGQAGAIRWGIAMS
LRSFVDQEMIESMRLAGLLTRDYRRRERKKFGQEGARRKYTWKKRASFLD
H
BO13846.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS9-PA | 395 | CG2957-PA | 1..395 | 1..395 | 2036 | 100 | Plus |