Clone Sequence Records
BO13847.3prime Sequence
365 bp (364 high quality bases) assembled on 2006-05-08
> BO13847.3prime
ATGGTCTAGAAAGCTTGCGTGGATCTTTTCCCAGTCCTCACGCTCCTCGC
GCTCCTTCACGACCTCCTTGAGGTAGGGTTCCAGATACTTGACGTCCTCC
TCGTACTTGGTCCACTGCTCCTTGGGCAGAATGGTCTTGGTCATGGACAG
ATGGAGGGCCCTCATGATGCGGTAGTTACGCTCATCGTACAGCTTCCTGG
GCAATCGGCGCACGGCCTCCTTCACATCCTCGTTCTCATACAGACAATCA
TCGCGATGCAGACCGTATTGGTTGAATCCGGAGAGATTGTAGGCCCATCT
GCCCAGATTTGAGAGAACTGCGGGTCCCTTTCTGGCAATATAGTTCGACA
TGTCGACTGATAACT
BO13847.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3560-PA | 336 | CG3560-RA | 1..333 | 351..19 | 1665 | 100 | Minus |
CG17856-PA | 336 | CG17856-RA | 205..266 | 147..86 | 235 | 95.1 | Minus |
CG17856-PA | 336 | CG17856-RA | 73..129 | 279..223 | 160 | 91.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3560-RA | 523 | CG3560-RA | 122..455 | 352..19 | 1670 | 100 | Minus |
CG32576-RA | 1709 | CG32576-RA | 742..987 | 19..264 | 1230 | 100 | Plus |
CG17856-RA | 503 | CG17856-RA | 86..407 | 352..31 | 650 | 80.1 | Minus |
CG32576-RA | 1709 | CG32576-RA | 1048..1097 | 262..311 | 250 | 100 | Plus |
CG32576-RA | 1709 | CG32576-RA | 1213..1253 | 312..352 | 205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16286675..16286920 | 264..19 | 1230 | 100 | Minus |
3R | 32079331 | 3R | 28294133..28294454 | 352..31 | 650 | 80.1 | Minus |
X | 23542271 | X | 16286565..16286614 | 311..262 | 250 | 100 | Minus |
X | 23542271 | X | 16286409..16286449 | 352..312 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:15:06 has no hits.
BO13847.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:40 Download gff for
BO13847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-PA | 1..336 | 15..351 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:43 Download gff for
BO13847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-PA | 1..336 | 15..351 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:20:11 Download gff for
BO13847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 122..458 | 15..352 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:41 Download gff for
BO13847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 122..458 | 15..352 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:41 Download gff for
BO13847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16286403..16286449 | 312..357 | 93 | -> | Minus |
X | 16286565..16286612 | 264..311 | 100 | -> | Minus |
X | 16286676..16286923 | 15..263 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:20:11 Download gff for
BO13847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16180436..16180482 | 312..357 | 93 | -> | Minus |
arm_X | 16180598..16180645 | 264..311 | 100 | -> | Minus |
arm_X | 16180709..16180956 | 15..263 | 99 | | Minus |
BO13847.5prime Sequence
365 bp (364 high quality bases) assembled on 2006-05-08
> BO13847.5prime
GAAGTTATCAGTCGACATGTCGAACTATATTGCCAGAAAGGGACCCGCAG
TTCTCTCAAATCTGGGCAGATGGGCCTACAATCTCTCCGGATTCAACCAA
TACGGTCTGCATCGCGATGATTGTCTGTATGAGAACGAGGATGTGAAGGA
GGCCGTGCGCCGATTGCCCAGGAAGCTGTACGATGAGCGTAACTACCGCA
TCATGAGGGCCCTCCATCTGTCCATGACCAAGACCATTCTGCCCAAGGAG
CAGTGGACCAAGTACGAGGAGGACGTCAAGTATCTGGAACCCTACCTCAA
GGAGGTCGTGAAGGAGCGCGAGGAGCGTGAGGACTGGGAAAAGATCCACG
CAAGCTTTCTAGACC
BO13847.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3560-PA | 336 | CG3560-RA | 1..333 | 17..349 | 1665 | 100 | Plus |
CG17856-PA | 336 | CG17856-RA | 205..266 | 221..282 | 235 | 95.1 | Plus |
CG17856-PA | 336 | CG17856-RA | 73..129 | 89..145 | 160 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3560-RA | 523 | CG3560-RA | 122..455 | 16..349 | 1670 | 100 | Plus |
CG32576-RA | 1709 | CG32576-RA | 742..987 | 349..104 | 1230 | 100 | Minus |
CG17856-RA | 503 | CG17856-RA | 86..407 | 16..337 | 650 | 80.1 | Plus |
CG32576-RA | 1709 | CG32576-RA | 1048..1097 | 106..57 | 250 | 100 | Minus |
CG32576-RA | 1709 | CG32576-RA | 1213..1253 | 56..16 | 205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16286675..16286920 | 104..349 | 1230 | 100 | Plus |
3R | 32079331 | 3R | 28294133..28294454 | 16..337 | 650 | 80.1 | Plus |
X | 23542271 | X | 16286565..16286614 | 57..106 | 250 | 100 | Plus |
X | 23542271 | X | 16286409..16286449 | 16..56 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:15:36 has no hits.
BO13847.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:41 Download gff for
BO13847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-PA | 1..336 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:44 Download gff for
BO13847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-PA | 1..336 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:01:57 Download gff for
BO13847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 122..458 | 16..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:57:37 Download gff for
BO13847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 122..458 | 16..353 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:57:37 Download gff for
BO13847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16286403..16286449 | 11..56 | 93 | -> | Plus |
X | 16286565..16286612 | 57..104 | 100 | -> | Plus |
X | 16286676..16286923 | 105..353 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:01:57 Download gff for
BO13847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16180709..16180956 | 105..353 | 99 | | Plus |
arm_X | 16180436..16180482 | 11..56 | 93 | -> | Plus |
arm_X | 16180598..16180645 | 57..104 | 100 | -> | Plus |
BO13847.complete Sequence
367 bp assembled on 2006-10-11
GenBank Submission: FJ632949
> BO13847.complete
GAAGTTATCAGTCGACATGTCGAACTATATTGCCAGAAAGGGACCCGCAG
TTCTCTCAAATCTGGGCAGATGGGCCTACAATCTCTCCGGATTCAACCAA
TACGGTCTGCATCGCGATGATTGTCTGTATGAGAACGAGGATGTGAAGGA
GGCCGTGCGCCGATTGCCCAGGAAGCTGTACGATGAGCGTAACTACCGCA
TCATGAGGGCCCTCCATCTGTCCATGACCAAGACCATTCTGCCCAAGGAG
CAGTGGACCAAGTACGAGGAGGACGTCAAGTATCTGGAACCCTACCTCAA
GGAGGTCGTGAAGGAGCGCGAGGAGCGTGAGGACTGGGAAAAGATCCACG
CAAGCTTTCTAGACCAT
BO13847.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3560-RA | 336 | CG3560-PA | 1..333 | 17..349 | 1665 | 100 | Plus |
CG17856-RA | 336 | CG17856-PA | 1..321 | 17..337 | 645 | 80.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3560-RA | 523 | CG3560-RA | 122..455 | 16..349 | 1670 | 100 | Plus |
CG32576-RA | 1709 | CG32576-RA | 742..987 | 349..104 | 1230 | 100 | Minus |
CG17856-RA | 503 | CG17856-RA | 86..407 | 16..337 | 650 | 80.1 | Plus |
CG32576-RA | 1709 | CG32576-RA | 1048..1097 | 106..57 | 250 | 100 | Minus |
CG32576-RA | 1709 | CG32576-RA | 1213..1253 | 56..16 | 205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16286675..16286920 | 104..349 | 1230 | 100 | Plus |
3R | 32079331 | 3R | 28294133..28294454 | 16..337 | 650 | 80.1 | Plus |
X | 23542271 | X | 16286565..16286614 | 57..106 | 250 | 100 | Plus |
X | 23542271 | X | 16286409..16286449 | 16..56 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:24:01 has no hits.
BO13847.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:26 Download gff for
BO13847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 1..336 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:22 Download gff for
BO13847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 68..404 | 16..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:52 Download gff for
BO13847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 123..455 | 17..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:26 Download gff for
BO13847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 68..404 | 16..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:10 Download gff for
BO13847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 123..455 | 17..351 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:10 Download gff for
BO13847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16286410..16286449 | 17..56 | 100 | -> | Plus |
X | 16286565..16286612 | 57..104 | 100 | -> | Plus |
X | 16286676..16286920 | 105..351 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:52 Download gff for
BO13847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16180443..16180482 | 17..56 | 100 | -> | Plus |
arm_X | 16180598..16180645 | 57..104 | 100 | -> | Plus |
arm_X | 16180709..16180953 | 105..351 | 99 | | Plus |
BO13847.pep Sequence
Translation from 16 to 367
> BO13847.pep
MSNYIARKGPAVLSNLGRWAYNLSGFNQYGLHRDDCLYENEDVKEAVRRL
PRKLYDERNYRIMRALHLSMTKTILPKEQWTKYEEDVKYLEPYLKEVVKE
REEREDWEKIHASFLDH
BO13847.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3560-PA | 111 | CG3560-PA | 1..111 | 1..111 | 598 | 100 | Plus |
CG17856-PA | 111 | CG17856-PA | 1..111 | 1..111 | 528 | 85.6 | Plus |