Clone Sequence Records
BO13851.3prime Sequence
455 bp (454 high quality bases) assembled on 2006-05-08
> BO13851.3prime
ATGGTCTAGAAAGCTTGCTCGGCCGAAACGCATGTGACCGTAGTCATCGA
ACTGATCATCACCTCCCCTTTTACCAAACCTCATATGGCCGTAATCATCA
AACCGCTTAGCTTTCGTTCTTTCGTCATCATTATCCATGAGGAGATCCAG
CTCAATTGGTATTATTGGGCGTGAAATTAGTGGCACTCTGCGACCGAAGC
TCATTGTTTTCTGATTACGCCTGTCCCCGAATAGAGAGAATGATGGTCCA
ACTAAATTCGCAATGGGCTGATCGATTTCCCCACCAATTTTTGACTCCAA
TTCCTGTAGTCGCCGATCATCCTTAGCGTTCTGTAGACTAGTCGTCTGCG
CTGGGATCGGCAGCACCACCAGGAAGCAGAAGGCTAATGCCCAGAGTGGC
ATAAACAGCGTGGCGAAGTGCGTACAGCTTCTAGGTCCCATGTCGACTGA
TAACT
BO13851.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18090-PA | 426 | Dsk-RA | 1..423 | 441..19 | 2115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsk-RA | 569 | CG18090-RA | 27..450 | 442..19 | 2120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4189811..4190234 | 19..442 | 2120 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:20:55 has no hits.
BO13851.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:45 Download gff for
BO13851.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsk-PA | 1..426 | 15..441 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:52 Download gff for
BO13851.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18090-PA | 1..426 | 15..441 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:57:40 Download gff for
BO13851.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsk-RA | 19..453 | 15..449 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:49:08 Download gff for
BO13851.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsk-RA | 19..453 | 15..449 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:49:08 Download gff for
BO13851.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4189807..4190242 | 15..449 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:57:40 Download gff for
BO13851.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15529..15964 | 15..449 | 98 | | Plus |
BO13851.5prime Sequence
455 bp (454 high quality bases) assembled on 2006-05-08
> BO13851.5prime
GAAGTTATCAGTCGACATGGGACCTAGAAGCTGTACGCACTTCGCCACGC
TGTTTATGCCACTCTGGGCATTAGCCTTCTGCTTCCTGGTGGTGCTGCCG
ATCCCAGCGCAGACGACTAGTCTACAGAACGCTAAGGATGATCGGCGACT
ACAGGAATTGGAGTCAAAAATTGGTGGGGAAATCGATCAGCCCATTGCGA
ATTTAGTTGGACCATCATTCTCTCTATTCGGGGACAGGCGTAATCAGAAA
ACAATGAGCTTCGGTCGCAGAGTGCCACTAATTTCACGCCCAATAATACC
AATTGAGCTGGATCTCCTCATGGATAATGATGACGAAAGAACGAAAGCTA
AGCGGTTTGATGATTACGGCCATATGAGGTTTGGTAAAAGGGGAGGTGAT
GATCAGTTCGATGACTACGGTCACATGCGTTTCGGCCGAGCAAGCTTTCT
AGACC
BO13851.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18090-PA | 426 | Dsk-RA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsk-RA | 569 | CG18090-RA | 27..450 | 16..439 | 2120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:25:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4189811..4190234 | 439..16 | 2120 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:25:33 has no hits.
BO13851.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:46 Download gff for
BO13851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsk-PA | 1..426 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:53 Download gff for
BO13851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18090-PA | 1..426 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:16:09 Download gff for
BO13851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsk-RA | 19..453 | 9..443 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:47 Download gff for
BO13851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsk-RA | 19..453 | 9..443 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:47 Download gff for
BO13851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4189807..4190242 | 9..443 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:16:09 Download gff for
BO13851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15529..15964 | 9..443 | 98 | | Minus |
BO13851.complete Sequence
457 bp assembled on 2006-10-11
GenBank Submission: FJ632950
> BO13851.complete
GAAGTTATCAGTCGACATGGGACCTAGAAGCTGTACGCACTTCGCCACGC
TGTTTATGCCACTCTGGGCATTAGCCTTCTGCTTCCTGGTGGTGCTGCCG
ATCCCAGCGCAGACGACTAGTCTACAGAACGCTAAGGATGATCGGCGACT
ACAGGAATTGGAGTCAAAAATTGGTGGGGAAATCGATCAGCCCATTGCGA
ATTTAGTTGGACCATCATTCTCTCTATTCGGGGACAGGCGTAATCAGAAA
ACAATGAGCTTCGGTCGCAGAGTGCCACTAATTTCACGCCCAATAATACC
AATTGAGCTGGATCTCCTCATGGATAATGATGACGAAAGAACGAAAGCTA
AGCGGTTTGATGATTACGGCCATATGAGGTTTGGTAAAAGGGGAGGTGAT
GATCAGTTCGATGACTACGGTCACATGCGTTTCGGCCGAGCAAGCTTTCT
AGACCAT
BO13851.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsk-RA | 426 | CG18090-PA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsk-RA | 569 | CG18090-RA | 27..450 | 16..439 | 2120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:21:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4189811..4190234 | 439..16 | 2120 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:21:30 has no hits.
BO13851.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:27 Download gff for
BO13851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsk-RA | 1..426 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:24 Download gff for
BO13851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsk-RA | 207..641 | 9..443 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:12 Download gff for
BO13851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsk-RA | 28..450 | 17..441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:27 Download gff for
BO13851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsk-RA | 207..641 | 9..443 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:44 Download gff for
BO13851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsk-RA | 28..450 | 17..441 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:44 Download gff for
BO13851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4189809..4190233 | 17..441 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:12 Download gff for
BO13851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15531..15955 | 17..441 | 99 | | Minus |
BO13851.pep Sequence
Translation from 16 to 457
> BO13851.pep
MGPRSCTHFATLFMPLWALAFCFLVVLPIPAQTTSLQNAKDDRRLQELES
KIGGEIDQPIANLVGPSFSLFGDRRNQKTMSFGRRVPLISRPIIPIELDL
LMDNDDERTKAKRFDDYGHMRFGKRGGDDQFDDYGHMRFGRASFLDH
BO13851.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsk-PA | 141 | CG18090-PA | 1..141 | 1..141 | 751 | 100 | Plus |
