Clone Sequence Records
BO13852.3prime Sequence
659 bp (658 high quality bases) assembled on 2006-05-08
> BO13852.3prime
ATGGTCTAGAAAGCTTGCTTCGAAGTACTTCTTGAACTCCAGGCATCCGG
CCCAGTTCTCCTCCCATCCGGGAGTCACCTTCTTGGCGTTCTCGTACCAC
CTGTTCACATTGGCGTACTTGCTGATCTCGAATTTGGCCACCTCGAATGT
GGACACGGTTGCCACCAGGGCAATGTCGGCTACGGTAAGGGAGTCACCGG
CGGCGTAGTCCTGTCCCTCCAGGAAGGTGTTCAGGAACTCGAAGGCGGCC
TCGATCTTCTTGAAGGCCTCTGGATCGGCGGGCGCCTTGGCGAACACCTG
TGGGTAGTAGTAGTTGGCGAAGCTCTGGTACAGCGTTCCCATGTCGAAGT
ACAGGCGCTGATTGATCACGGCGCGCTTCTTGGGGCACTTAGGGTACAGG
GAGTCGGTCTTGCCGTACTTCTCCACCAAATACACCTGGATGGCGCGGGA
CTCCCACAGCGCGAATCCGTTGTCCACCAGCGTGGGAATGGTGTGCTGGG
GATTGATCTTCAGGAACTCCGGCTTCAGGTGCTCACCGGCCTGCAGGTTG
AGCAGCTTCTTGTTCAGCTCGACGCCCACGGCCTTGGCGGTCATGATCAC
GGAGCGGCAGGGGGAGGAGCCGGGCAGGTAGTAGAAGTCAACCATGTCGA
CTGATAACT
BO13852.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10045-PA | 630 | GstD1-RA | 1..627 | 645..19 | 3135 | 100 | Minus |
CG10045-PB | 630 | GstD1-RB | 1..627 | 645..19 | 3135 | 100 | Minus |
CG11512-PA | 648 | GstD4-RA | 137..182 | 506..461 | 205 | 97.8 | Minus |
CG4181-PA | 648 | GstD2-RA | 259..338 | 384..305 | 200 | 90 | Minus |
CG4181-PA | 648 | GstD2-RA | 137..180 | 506..463 | 195 | 97.7 | Minus |
CG12242-PA | 651 | GstD5-RA | 146..180 | 497..463 | 175 | 100 | Minus |
CG18548-PA | 633 | GstD10-RA | 278..317 | 368..329 | 175 | 97.5 | Minus |
CG12242-PA | 651 | GstD5-RA | 553..591 | 90..52 | 170 | 97.4 | Minus |
CG4181-PA | 648 | GstD2-RA | 540..592 | 103..51 | 165 | 92.4 | Minus |
CG17524-PA | 663 | GstE3-RA | 118..162 | 534..490 | 150 | 93.3 | Minus |
CG4371-PA | 675 | GstD7-RA | 154..188 | 498..464 | 150 | 97.1 | Minus |
CG12242-PA | 651 | GstD5-RA | 286..338 | 357..305 | 140 | 90.5 | Minus |
CG4421-PA | 639 | GstD8-RA | 540..592 | 103..51 | 140 | 90.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:20:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD1-RB | 843 | CG10045-RB | 89..715 | 645..19 | 3135 | 100 | Minus |
GstD1-RA | 825 | CG10045-RA | 71..697 | 645..19 | 3135 | 100 | Minus |
GstD2-RA | 734 | CG4181-RA | 61..619 | 609..51 | 860 | 77.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:20:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12367945..12368571 | 19..645 | 3135 | 100 | Plus |
3R | 32079331 | 3R | 12372031..12372589 | 609..51 | 815 | 76.4 | Minus |
3R | 32079331 | 3R | 12375800..12376354 | 606..52 | 780 | 76 | Minus |
3R | 32079331 | 3R | 12380039..12380631 | 639..47 | 670 | 74.2 | Minus |
3R | 32079331 | 3R | 12364920..12365423 | 20..523 | 645 | 75.2 | Plus |
3R | 32079331 | 3R | 12374264..12374464 | 531..331 | 480 | 82.6 | Minus |
3R | 32079331 | 3R | 12366543..12366898 | 291..646 | 430 | 74.7 | Plus |
3R | 32079331 | 3R | 12378609..12378872 | 588..328 | 370 | 76.9 | Minus |
3R | 32079331 | 3R | 12373190..12373678 | 534..46 | 315 | 71 | Minus |
3R | 32079331 | 3R | 12377304..12377505 | 510..309 | 230 | 74.3 | Minus |
3R | 32079331 | 3R | 12374534..12374743 | 261..52 | 225 | 73.8 | Minus |
2R | 25286936 | 2R | 18400874..18400931 | 534..477 | 185 | 87.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:20:10 has no hits.
BO13852.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:47 Download gff for
BO13852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10045-PB | 1..630 | 15..645 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:54 Download gff for
BO13852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10045-PB | 1..630 | 15..645 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:59:46 Download gff for
BO13852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RA | 68..705 | 7..645 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:21 Download gff for
BO13852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RA | 71..708 | 7..645 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:21 Download gff for
BO13852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12367934..12368580 | 7..656 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:59:46 Download gff for
BO13852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8193656..8194302 | 7..656 | 98 | | Plus |
BO13852.5prime Sequence
659 bp (658 high quality bases) assembled on 2006-05-08
> BO13852.5prime
GAAGTTATCAGTCGACATGGTTGACTTCTACTACCTGCCCGGCTCCTCCC
CCTGCCGCTCCGTGATCATGACCGCCAAGGCCGTGGGCGTCGAGCTGAAC
AAGAAGCTGCTCAACCTGCAGGCCGGTGAGCACCTGAAGCCGGAGTTCCT
GAAGATCAATCCCCAGCACACCATTCCCACGCTGGTGGACAACGGATTCG
CGCTGTGGGAGTCCCGCGCCATCCAGGTGTATTTGGTGGAGAAGTACGGC
AAGACCGACTCCCTGTACCCTAAGTGCCCCAAGAAGCGCGCCGTGATCAA
TCAGCGCCTGTACTTCGACATGGGAACGCTGTACCAGAGCTTCGCCAACT
ACTACTACCCACAGGTGTTCGCCAAGGCGCCCGCCGATCCAGAGGCCTTC
AAGAAGATCGAGGCCGCCTTCGAGTTCCTGAACACCTTCCTGGAGGGACA
GGACTACGCCGCCGGTGACTCCCTTACCGTAGCCGACATTGCCCTGGTGG
CAACCGTGTCCACATTCGAGGTGGCCAAATTCGAGATCAGCAAGTACGCC
AATGTGAACAGGTGGTACGAGAACGCCAAGAAGGTGACTCCCGGATGGGA
GGAGAACTGGGCCGGATGCCTGGAGTTCAAGAAGTACTTCGAAGCAAGCT
TTCTAGACC
BO13852.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10045-PA | 630 | GstD1-RA | 1..627 | 17..643 | 3135 | 100 | Plus |
CG10045-PB | 630 | GstD1-RB | 1..627 | 17..643 | 3135 | 100 | Plus |
CG11512-PA | 648 | GstD4-RA | 137..182 | 156..201 | 205 | 97.8 | Plus |
CG4181-PA | 648 | GstD2-RA | 259..338 | 278..357 | 200 | 90 | Plus |
CG4181-PA | 648 | GstD2-RA | 137..180 | 156..199 | 195 | 97.7 | Plus |
CG12242-PA | 651 | GstD5-RA | 146..180 | 165..199 | 175 | 100 | Plus |
CG18548-PA | 633 | GstD10-RA | 278..317 | 294..333 | 175 | 97.5 | Plus |
CG12242-PA | 651 | GstD5-RA | 553..591 | 572..610 | 170 | 97.4 | Plus |
CG4181-PA | 648 | GstD2-RA | 540..592 | 559..611 | 165 | 92.4 | Plus |
CG17524-PA | 663 | GstE3-RA | 118..162 | 128..172 | 150 | 93.3 | Plus |
CG4371-PA | 675 | GstD7-RA | 154..188 | 164..198 | 150 | 97.1 | Plus |
CG12242-PA | 651 | GstD5-RA | 286..338 | 305..357 | 140 | 90.5 | Plus |
CG4421-PA | 639 | GstD8-RA | 540..592 | 559..611 | 140 | 90.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:25:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD1-RB | 843 | CG10045-RB | 89..715 | 17..643 | 3135 | 100 | Plus |
GstD1-RA | 825 | CG10045-RA | 71..697 | 17..643 | 3135 | 100 | Plus |
GstD2-RA | 734 | CG4181-RA | 61..619 | 53..611 | 860 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12367945..12368571 | 643..17 | 3135 | 100 | Minus |
3R | 32079331 | 3R | 12372031..12372589 | 53..611 | 815 | 76.4 | Plus |
3R | 32079331 | 3R | 12375800..12376354 | 56..610 | 780 | 76 | Plus |
3R | 32079331 | 3R | 12380039..12380631 | 23..615 | 670 | 74.2 | Plus |
3R | 32079331 | 3R | 12364920..12365423 | 642..139 | 645 | 75.2 | Minus |
3R | 32079331 | 3R | 12374264..12374464 | 131..331 | 480 | 82.6 | Plus |
3R | 32079331 | 3R | 12366543..12366898 | 371..16 | 430 | 74.7 | Minus |
3R | 32079331 | 3R | 12378609..12378872 | 74..334 | 370 | 76.9 | Plus |
3R | 32079331 | 3R | 12373190..12373678 | 128..616 | 315 | 71 | Plus |
3R | 32079331 | 3R | 12377304..12377505 | 152..353 | 230 | 74.3 | Plus |
3R | 32079331 | 3R | 12374534..12374743 | 401..610 | 225 | 73.8 | Plus |
2R | 25286936 | 2R | 18400874..18400931 | 128..185 | 185 | 87.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:25:47 has no hits.
BO13852.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:48 Download gff for
BO13852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10045-PB | 1..630 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:56 Download gff for
BO13852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10045-PB | 1..630 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:57:43 Download gff for
BO13852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RA | 68..705 | 17..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:36 Download gff for
BO13852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RA | 71..708 | 17..655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:36 Download gff for
BO13852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12367934..12368580 | 6..655 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:57:43 Download gff for
BO13852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8193656..8194302 | 6..655 | 98 | | Minus |
BO13852.complete Sequence
661 bp assembled on 2006-10-11
GenBank Submission: FJ632951
> BO13852.complete
GAAGTTATCAGTCGACATGGTTGACTTCTACTACCTGCCCGGCTCCTCCC
CCTGCCGCTCCGTGATCATGACCGCCAAGGCCGTGGGCGTCGAGCTGAAC
AAGAAGCTGCTCAACCTGCAGGCCGGTGAGCACCTGAAGCCGGAGTTCCT
GAAGATCAATCCCCAGCACACCATTCCCACGCTGGTGGACAACGGATTCG
CGCTGTGGGAGTCCCGCGCCATCCAGGTGTATTTGGTGGAGAAGTACGGC
AAGACCGACTCCCTGTACCCTAAGTGCCCCAAGAAGCGCGCCGTGATCAA
TCAGCGCCTGTACTTCGACATGGGAACGCTGTACCAGAGCTTCGCCAACT
ACTACTACCCACAGGTGTTCGCCAAGGCGCCCGCCGATCCAGAGGCCTTC
AAGAAGATCGAGGCCGCCTTCGAGTTCCTGAACACCTTCCTGGAGGGACA
GGACTACGCCGCCGGTGACTCCCTTACCGTAGCCGACATTGCCCTGGTGG
CAACCGTGTCCACATTCGAGGTGGCCAAATTCGAGATCAGCAAGTACGCC
AATGTGAACAGGTGGTACGAGAACGCCAAGAAGGTGACTCCCGGATGGGA
GGAGAACTGGGCCGGATGCCTGGAGTTCAAGAAGTACTTCGAAGCAAGCT
TTCTAGACCAT
BO13852.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD1-RB | 630 | CG10045-PB | 1..627 | 17..643 | 3135 | 100 | Plus |
GstD1-RA | 630 | CG10045-PA | 1..627 | 17..643 | 3135 | 100 | Plus |
GstD2-RA | 648 | CG4181-PA | 34..592 | 53..611 | 815 | 76.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD1-RB | 843 | CG10045-RB | 89..715 | 17..643 | 3135 | 100 | Plus |
GstD1-RA | 825 | CG10045-RA | 71..697 | 17..643 | 3135 | 100 | Plus |
GstD2-RA | 734 | CG4181-RA | 61..619 | 53..611 | 815 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12367945..12368571 | 643..17 | 3135 | 100 | Minus |
3R | 32079331 | 3R | 12372031..12372589 | 53..611 | 815 | 76.4 | Plus |
3R | 32079331 | 3R | 12375800..12376354 | 56..610 | 780 | 76 | Plus |
3R | 32079331 | 3R | 12380039..12380631 | 23..615 | 670 | 74.2 | Plus |
3R | 32079331 | 3R | 12364920..12365423 | 642..139 | 645 | 75.2 | Minus |
3R | 32079331 | 3R | 12374264..12374464 | 131..331 | 480 | 82.6 | Plus |
3R | 32079331 | 3R | 12366543..12366898 | 371..16 | 430 | 74.7 | Minus |
3R | 32079331 | 3R | 12378609..12378872 | 74..334 | 370 | 76.9 | Plus |
3R | 32079331 | 3R | 12373190..12373678 | 128..616 | 315 | 71 | Plus |
3R | 32079331 | 3R | 12377304..12377505 | 152..353 | 230 | 74.3 | Plus |
3R | 32079331 | 3R | 12374534..12374743 | 401..610 | 225 | 73.8 | Plus |
2R | 25286936 | 2R | 18400874..18400931 | 128..185 | 185 | 87.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:11:51 has no hits.
BO13852.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:50 Download gff for
BO13852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RB | 1..630 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:55 Download gff for
BO13852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RB | 116..762 | 6..655 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:44 Download gff for
BO13852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RA | 68..694 | 17..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:50 Download gff for
BO13852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RB | 116..762 | 6..655 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:47 Download gff for
BO13852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RA | 71..697 | 17..645 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:47 Download gff for
BO13852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12367943..12368571 | 17..645 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:44 Download gff for
BO13852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8193665..8194293 | 17..645 | 99 | | Minus |
BO13852.pep Sequence
Translation from 16 to 661
> BO13852.pep
MVDFYYLPGSSPCRSVIMTAKAVGVELNKKLLNLQAGEHLKPEFLKINPQ
HTIPTLVDNGFALWESRAIQVYLVEKYGKTDSLYPKCPKKRAVINQRLYF
DMGTLYQSFANYYYPQVFAKAPADPEAFKKIEAAFEFLNTFLEGQDYAAG
DSLTVADIALVATVSTFEVAKFEISKYANVNRWYENAKKVTPGWEENWAG
CLEFKKYFEASFLDH
BO13852.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD1-PB | 209 | CG10045-PB | 1..209 | 1..209 | 1108 | 100 | Plus |
GstD1-PA | 209 | CG10045-PA | 1..209 | 1..209 | 1108 | 100 | Plus |
GstD10-PB | 210 | CG18548-PB | 1..209 | 2..209 | 817 | 71.3 | Plus |
GstD10-PA | 210 | CG18548-PA | 1..209 | 2..209 | 817 | 71.3 | Plus |
GstD2-PA | 215 | CG4181-PA | 1..209 | 2..210 | 806 | 70.3 | Plus |