Clone BO13852 Report

Search the DGRC for BO13852

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptGstD1-RA
Protein status:BO13852.pep: validated full length
Sequenced Size:661

Clone Sequence Records

BO13852.3prime Sequence

659 bp (658 high quality bases) assembled on 2006-05-08

> BO13852.3prime
ATGGTCTAGAAAGCTTGCTTCGAAGTACTTCTTGAACTCCAGGCATCCGG
CCCAGTTCTCCTCCCATCCGGGAGTCACCTTCTTGGCGTTCTCGTACCAC
CTGTTCACATTGGCGTACTTGCTGATCTCGAATTTGGCCACCTCGAATGT
GGACACGGTTGCCACCAGGGCAATGTCGGCTACGGTAAGGGAGTCACCGG
CGGCGTAGTCCTGTCCCTCCAGGAAGGTGTTCAGGAACTCGAAGGCGGCC
TCGATCTTCTTGAAGGCCTCTGGATCGGCGGGCGCCTTGGCGAACACCTG
TGGGTAGTAGTAGTTGGCGAAGCTCTGGTACAGCGTTCCCATGTCGAAGT
ACAGGCGCTGATTGATCACGGCGCGCTTCTTGGGGCACTTAGGGTACAGG
GAGTCGGTCTTGCCGTACTTCTCCACCAAATACACCTGGATGGCGCGGGA
CTCCCACAGCGCGAATCCGTTGTCCACCAGCGTGGGAATGGTGTGCTGGG
GATTGATCTTCAGGAACTCCGGCTTCAGGTGCTCACCGGCCTGCAGGTTG
AGCAGCTTCTTGTTCAGCTCGACGCCCACGGCCTTGGCGGTCATGATCAC
GGAGCGGCAGGGGGAGGAGCCGGGCAGGTAGTAGAAGTCAACCATGTCGA
CTGATAACT

BO13852.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10045-PA 630 GstD1-RA 1..627 645..19 3135 100 Minus
CG10045-PB 630 GstD1-RB 1..627 645..19 3135 100 Minus
CG11512-PA 648 GstD4-RA 137..182 506..461 205 97.8 Minus
CG4181-PA 648 GstD2-RA 259..338 384..305 200 90 Minus
CG4181-PA 648 GstD2-RA 137..180 506..463 195 97.7 Minus
CG12242-PA 651 GstD5-RA 146..180 497..463 175 100 Minus
CG18548-PA 633 GstD10-RA 278..317 368..329 175 97.5 Minus
CG12242-PA 651 GstD5-RA 553..591 90..52 170 97.4 Minus
CG4181-PA 648 GstD2-RA 540..592 103..51 165 92.4 Minus
CG17524-PA 663 GstE3-RA 118..162 534..490 150 93.3 Minus
CG4371-PA 675 GstD7-RA 154..188 498..464 150 97.1 Minus
CG12242-PA 651 GstD5-RA 286..338 357..305 140 90.5 Minus
CG4421-PA 639 GstD8-RA 540..592 103..51 140 90.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
GstD1-RB 843 CG10045-RB 89..715 645..19 3135 100 Minus
GstD1-RA 825 CG10045-RA 71..697 645..19 3135 100 Minus
GstD2-RA 734 CG4181-RA 61..619 609..51 860 77.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12367945..12368571 19..645 3135 100 Plus
3R 32079331 3R 12372031..12372589 609..51 815 76.4 Minus
3R 32079331 3R 12375800..12376354 606..52 780 76 Minus
3R 32079331 3R 12380039..12380631 639..47 670 74.2 Minus
3R 32079331 3R 12364920..12365423 20..523 645 75.2 Plus
3R 32079331 3R 12374264..12374464 531..331 480 82.6 Minus
3R 32079331 3R 12366543..12366898 291..646 430 74.7 Plus
3R 32079331 3R 12378609..12378872 588..328 370 76.9 Minus
3R 32079331 3R 12373190..12373678 534..46 315 71 Minus
3R 32079331 3R 12377304..12377505 510..309 230 74.3 Minus
3R 32079331 3R 12374534..12374743 261..52 225 73.8 Minus
2R 25286936 2R 18400874..18400931 534..477 185 87.9 Minus
Blast to na_te.dros performed on 2015-02-10 22:20:10 has no hits.

BO13852.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:47 Download gff for BO13852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10045-PB 1..630 15..645 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:54 Download gff for BO13852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10045-PB 1..630 15..645 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:59:46 Download gff for BO13852.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD1-RA 68..705 7..645 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:21 Download gff for BO13852.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD1-RA 71..708 7..645 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:21 Download gff for BO13852.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12367934..12368580 7..656 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:59:46 Download gff for BO13852.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8193656..8194302 7..656 98   Plus

BO13852.5prime Sequence

659 bp (658 high quality bases) assembled on 2006-05-08

> BO13852.5prime
GAAGTTATCAGTCGACATGGTTGACTTCTACTACCTGCCCGGCTCCTCCC
CCTGCCGCTCCGTGATCATGACCGCCAAGGCCGTGGGCGTCGAGCTGAAC
AAGAAGCTGCTCAACCTGCAGGCCGGTGAGCACCTGAAGCCGGAGTTCCT
GAAGATCAATCCCCAGCACACCATTCCCACGCTGGTGGACAACGGATTCG
CGCTGTGGGAGTCCCGCGCCATCCAGGTGTATTTGGTGGAGAAGTACGGC
AAGACCGACTCCCTGTACCCTAAGTGCCCCAAGAAGCGCGCCGTGATCAA
TCAGCGCCTGTACTTCGACATGGGAACGCTGTACCAGAGCTTCGCCAACT
ACTACTACCCACAGGTGTTCGCCAAGGCGCCCGCCGATCCAGAGGCCTTC
AAGAAGATCGAGGCCGCCTTCGAGTTCCTGAACACCTTCCTGGAGGGACA
GGACTACGCCGCCGGTGACTCCCTTACCGTAGCCGACATTGCCCTGGTGG
CAACCGTGTCCACATTCGAGGTGGCCAAATTCGAGATCAGCAAGTACGCC
AATGTGAACAGGTGGTACGAGAACGCCAAGAAGGTGACTCCCGGATGGGA
GGAGAACTGGGCCGGATGCCTGGAGTTCAAGAAGTACTTCGAAGCAAGCT
TTCTAGACC

BO13852.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10045-PA 630 GstD1-RA 1..627 17..643 3135 100 Plus
CG10045-PB 630 GstD1-RB 1..627 17..643 3135 100 Plus
CG11512-PA 648 GstD4-RA 137..182 156..201 205 97.8 Plus
CG4181-PA 648 GstD2-RA 259..338 278..357 200 90 Plus
CG4181-PA 648 GstD2-RA 137..180 156..199 195 97.7 Plus
CG12242-PA 651 GstD5-RA 146..180 165..199 175 100 Plus
CG18548-PA 633 GstD10-RA 278..317 294..333 175 97.5 Plus
CG12242-PA 651 GstD5-RA 553..591 572..610 170 97.4 Plus
CG4181-PA 648 GstD2-RA 540..592 559..611 165 92.4 Plus
CG17524-PA 663 GstE3-RA 118..162 128..172 150 93.3 Plus
CG4371-PA 675 GstD7-RA 154..188 164..198 150 97.1 Plus
CG12242-PA 651 GstD5-RA 286..338 305..357 140 90.5 Plus
CG4421-PA 639 GstD8-RA 540..592 559..611 140 90.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
GstD1-RB 843 CG10045-RB 89..715 17..643 3135 100 Plus
GstD1-RA 825 CG10045-RA 71..697 17..643 3135 100 Plus
GstD2-RA 734 CG4181-RA 61..619 53..611 860 77.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12367945..12368571 643..17 3135 100 Minus
3R 32079331 3R 12372031..12372589 53..611 815 76.4 Plus
3R 32079331 3R 12375800..12376354 56..610 780 76 Plus
3R 32079331 3R 12380039..12380631 23..615 670 74.2 Plus
3R 32079331 3R 12364920..12365423 642..139 645 75.2 Minus
3R 32079331 3R 12374264..12374464 131..331 480 82.6 Plus
3R 32079331 3R 12366543..12366898 371..16 430 74.7 Minus
3R 32079331 3R 12378609..12378872 74..334 370 76.9 Plus
3R 32079331 3R 12373190..12373678 128..616 315 71 Plus
3R 32079331 3R 12377304..12377505 152..353 230 74.3 Plus
3R 32079331 3R 12374534..12374743 401..610 225 73.8 Plus
2R 25286936 2R 18400874..18400931 128..185 185 87.9 Plus
Blast to na_te.dros performed on 2015-02-10 22:25:47 has no hits.

BO13852.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:48 Download gff for BO13852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10045-PB 1..630 17..647 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:56 Download gff for BO13852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10045-PB 1..630 17..647 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:57:43 Download gff for BO13852.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD1-RA 68..705 17..655 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:36 Download gff for BO13852.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD1-RA 71..708 17..655 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:36 Download gff for BO13852.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12367934..12368580 6..655 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:57:43 Download gff for BO13852.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8193656..8194302 6..655 98   Minus

BO13852.complete Sequence

661 bp assembled on 2006-10-11

GenBank Submission: FJ632951

> BO13852.complete
GAAGTTATCAGTCGACATGGTTGACTTCTACTACCTGCCCGGCTCCTCCC
CCTGCCGCTCCGTGATCATGACCGCCAAGGCCGTGGGCGTCGAGCTGAAC
AAGAAGCTGCTCAACCTGCAGGCCGGTGAGCACCTGAAGCCGGAGTTCCT
GAAGATCAATCCCCAGCACACCATTCCCACGCTGGTGGACAACGGATTCG
CGCTGTGGGAGTCCCGCGCCATCCAGGTGTATTTGGTGGAGAAGTACGGC
AAGACCGACTCCCTGTACCCTAAGTGCCCCAAGAAGCGCGCCGTGATCAA
TCAGCGCCTGTACTTCGACATGGGAACGCTGTACCAGAGCTTCGCCAACT
ACTACTACCCACAGGTGTTCGCCAAGGCGCCCGCCGATCCAGAGGCCTTC
AAGAAGATCGAGGCCGCCTTCGAGTTCCTGAACACCTTCCTGGAGGGACA
GGACTACGCCGCCGGTGACTCCCTTACCGTAGCCGACATTGCCCTGGTGG
CAACCGTGTCCACATTCGAGGTGGCCAAATTCGAGATCAGCAAGTACGCC
AATGTGAACAGGTGGTACGAGAACGCCAAGAAGGTGACTCCCGGATGGGA
GGAGAACTGGGCCGGATGCCTGGAGTTCAAGAAGTACTTCGAAGCAAGCT
TTCTAGACCAT

BO13852.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
GstD1-RB 630 CG10045-PB 1..627 17..643 3135 100 Plus
GstD1-RA 630 CG10045-PA 1..627 17..643 3135 100 Plus
GstD2-RA 648 CG4181-PA 34..592 53..611 815 76.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
GstD1-RB 843 CG10045-RB 89..715 17..643 3135 100 Plus
GstD1-RA 825 CG10045-RA 71..697 17..643 3135 100 Plus
GstD2-RA 734 CG4181-RA 61..619 53..611 815 76.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12367945..12368571 643..17 3135 100 Minus
3R 32079331 3R 12372031..12372589 53..611 815 76.4 Plus
3R 32079331 3R 12375800..12376354 56..610 780 76 Plus
3R 32079331 3R 12380039..12380631 23..615 670 74.2 Plus
3R 32079331 3R 12364920..12365423 642..139 645 75.2 Minus
3R 32079331 3R 12374264..12374464 131..331 480 82.6 Plus
3R 32079331 3R 12366543..12366898 371..16 430 74.7 Minus
3R 32079331 3R 12378609..12378872 74..334 370 76.9 Plus
3R 32079331 3R 12373190..12373678 128..616 315 71 Plus
3R 32079331 3R 12377304..12377505 152..353 230 74.3 Plus
3R 32079331 3R 12374534..12374743 401..610 225 73.8 Plus
2R 25286936 2R 18400874..18400931 128..185 185 87.9 Plus
Blast to na_te.dros performed on 2014-11-28 00:11:51 has no hits.

BO13852.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:50 Download gff for BO13852.complete
Subject Subject Range Query Range Percent Splice Strand
GstD1-RB 1..630 17..647 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:55 Download gff for BO13852.complete
Subject Subject Range Query Range Percent Splice Strand
GstD1-RB 116..762 6..655 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:44 Download gff for BO13852.complete
Subject Subject Range Query Range Percent Splice Strand
GstD1-RA 68..694 17..645 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:50 Download gff for BO13852.complete
Subject Subject Range Query Range Percent Splice Strand
GstD1-RB 116..762 6..655 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:47 Download gff for BO13852.complete
Subject Subject Range Query Range Percent Splice Strand
GstD1-RA 71..697 17..645 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:47 Download gff for BO13852.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12367943..12368571 17..645 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:44 Download gff for BO13852.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8193665..8194293 17..645 99   Minus

BO13852.pep Sequence

Translation from 16 to 661

> BO13852.pep
MVDFYYLPGSSPCRSVIMTAKAVGVELNKKLLNLQAGEHLKPEFLKINPQ
HTIPTLVDNGFALWESRAIQVYLVEKYGKTDSLYPKCPKKRAVINQRLYF
DMGTLYQSFANYYYPQVFAKAPADPEAFKKIEAAFEFLNTFLEGQDYAAG
DSLTVADIALVATVSTFEVAKFEISKYANVNRWYENAKKVTPGWEENWAG
CLEFKKYFEASFLDH

BO13852.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
GstD1-PB 209 CG10045-PB 1..209 1..209 1108 100 Plus
GstD1-PA 209 CG10045-PA 1..209 1..209 1108 100 Plus
GstD10-PB 210 CG18548-PB 1..209 2..209 817 71.3 Plus
GstD10-PA 210 CG18548-PA 1..209 2..209 817 71.3 Plus
GstD2-PA 215 CG4181-PA 1..209 2..210 806 70.3 Plus