Clone Sequence Records
BO13853.3prime Sequence
557 bp (556 high quality bases) assembled on 2006-05-08
> BO13853.3prime
ATGGTCTAGAAAGCTTGCTTTTCTTTTCCACATACGATACCAGTTTTTGA
CTGTTTTTATGCTTATATGGGCATCTGCCTTTGTTTCGCCCTTAAGTTCG
AATACTATATCTGATTTGTAGGAATCGCGGGCCTCTTCCAAAATGGTTCC
AAAGATCTCGCACTGAATATTGGATGCCAGTTTCTTTTCGTTGTAGTTGC
GCTCCTTCAGACGATCGTAGAGTGTTGTATTGGGACAGGTTACCACGAAG
ACGGCTTGAAACCAGCGCTCTGGAAAGAAATCACAGCCATGATACTCGAC
GACGTTGCCCCCCTTTGCCATCAGGGGCTCCAAGTGATCCATCAGCTTTT
CTTCATCCAGAATGGGACAATCGTACTCCTCGTCATATTCCTCTACAAAA
TTTTTCTCCTTGGCGATTTTGGAGCAGTCCAGCCACTCAAACTTTAGTTC
GGAGGCTATACGTTCGCATAAATACGATTTCCCCGCTCCAGGAGTTCCGG
TTATTAGTATGTTGGGCTTGACATCTGGCTCTGGTTCTGACATGTCGACT
GATAACT
BO13853.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8816-PA | 528 | CG8816-RA | 1..525 | 543..19 | 2625 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ak6-RA | 711 | CG8816-RA | 122..646 | 543..19 | 2625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12569079..12569407 | 19..347 | 1645 | 100 | Plus |
2R | 25286936 | 2R | 12569461..12569613 | 346..498 | 765 | 100 | Plus |
2R | 25286936 | 2R | 12569680..12569726 | 497..543 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 11:38:53 has no hits.
BO13853.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:49 Download gff for
BO13853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8816-PA | 1..528 | 15..543 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:58 Download gff for
BO13853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8816-PA | 1..528 | 15..543 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:51:02 Download gff for
BO13853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ak6-RA | 118..649 | 15..550 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:57:19 Download gff for
BO13853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ak6-RA | 118..649 | 15..550 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:57:19 Download gff for
BO13853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12569075..12569405 | 15..345 | 99 | <- | Plus |
2R | 12569461..12569612 | 346..497 | 100 | <- | Plus |
2R | 12569681..12569730 | 498..550 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:51:02 Download gff for
BO13853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8456580..8456910 | 15..345 | 99 | <- | Plus |
arm_2R | 8456966..8457117 | 346..497 | 100 | <- | Plus |
arm_2R | 8457186..8457235 | 498..550 | 92 | | Plus |
BO13853.5prime Sequence
557 bp (556 high quality bases) assembled on 2006-05-08
> BO13853.5prime
GAAGTTATCAGTCGACATGTCAGAACCAGAGCCAGATGTCAAGCCCAACA
TACTAATAACCGGAACTCCTGGAGCGGGGAAATCGTATTTATGCGAACGT
ATAGCCTCCGAACTAAAGTTTGAGTGGCTGGACTGCTCCAAAATCGCCAA
GGAGAAAAATTTTGTAGAGGAATATGACGAGGAGTACGATTGTCCCATTC
TGGATGAAGAAAAGCTGATGGATCACTTGGAGCCCCTGATGGCAAAGGGG
GGCAACGTCGTCGAGTATCATGGCTGTGATTTCTTTCCAGAGCGCTGGTT
TCAAGCCGTCTTCGTGGTAACCTGTCCCAATACAACACTCTACGATCGTC
TGAAGGAGCGCAACTACAACGAAAAGAAACTGGCATCCAATATTCAGTGC
GAGATCTTTGGAACCATTTTGGAAGAGGCCCGCGATTCCTACAAATCAGA
TATAGTATTCGAACTTAAGGGCGAAACAAAGGCAGATGCCCATATAAGCA
TAAAAACAGTCAAAAACTGGTATCGTATGTGGAAAAGAAAAGCAAGCTTT
CTAGACC
BO13853.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8816-PA | 528 | CG8816-RA | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:58:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ak6-RA | 711 | CG8816-RA | 122..646 | 17..541 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12569079..12569407 | 541..213 | 1645 | 100 | Minus |
2R | 25286936 | 2R | 12569461..12569613 | 214..62 | 765 | 100 | Minus |
2R | 25286936 | 2R | 12569680..12569726 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:58:35 has no hits.
BO13853.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:50 Download gff for
BO13853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8816-PA | 1..528 | 17..545 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:59 Download gff for
BO13853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8816-PA | 1..528 | 17..545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:17:15 Download gff for
BO13853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ak6-RA | 118..649 | 10..545 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:16 Download gff for
BO13853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ak6-RA | 118..649 | 10..545 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:16 Download gff for
BO13853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12569681..12569730 | 10..62 | 92 | | Minus |
2R | 12569075..12569405 | 215..545 | 99 | <- | Minus |
2R | 12569461..12569612 | 63..214 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:17:15 Download gff for
BO13853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8456580..8456910 | 215..545 | 99 | <- | Minus |
arm_2R | 8456966..8457117 | 63..214 | 100 | <- | Minus |
arm_2R | 8457186..8457235 | 10..62 | 92 | | Minus |
BO13853.complete Sequence
559 bp assembled on 2006-10-11
GenBank Submission: FJ632952
> BO13853.complete
GAAGTTATCAGTCGACATGTCAGAACCAGAGCCAGATGTCAAGCCCAACA
TACTAATAACCGGAACTCCTGGAGCGGGGAAATCGTATTTATGCGAACGT
ATAGCCTCCGAACTAAAGTTTGAGTGGCTGGACTGCTCCAAAATCGCCAA
GGAGAAAAATTTTGTAGAGGAATATGACGAGGAGTACGATTGTCCCATTC
TGGATGAAGAAAAGCTGATGGATCACTTGGAGCCCCTGATGGCAAAGGGG
GGCAACGTCGTCGAGTATCATGGCTGTGATTTCTTTCCAGAGCGCTGGTT
TCAAGCCGTCTTCGTGGTAACCTGTCCCAATACAACACTCTACGATCGTC
TGAAGGAGCGCAACTACAACGAAAAGAAACTGGCATCCAATATTCAGTGC
GAGATCTTTGGAACCATTTTGGAAGAGGCCCGCGATTCCTACAAATCAGA
TATAGTATTCGAACTTAAGGGCGAAACAAAGGCAGATGCCCATATAAGCA
TAAAAACAGTCAAAAACTGGTATCGTATGTGGAAAAGAAAAGCAAGCTTT
CTAGACCAT
BO13853.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ak6-RA | 528 | CG8816-PA | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ak6-RA | 711 | CG8816-RA | 122..646 | 17..541 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:04:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12569079..12569407 | 541..213 | 1645 | 100 | Minus |
2R | 25286936 | 2R | 12569461..12569613 | 214..62 | 765 | 100 | Minus |
2R | 25286936 | 2R | 12569680..12569726 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:04:20 has no hits.
BO13853.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:54 Download gff for
BO13853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8816-RA | 1..528 | 17..545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:57 Download gff for
BO13853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8816-RA | 138..669 | 10..545 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:17 Download gff for
BO13853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ak6-RA | 122..637 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:55 Download gff for
BO13853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8816-RA | 138..669 | 10..545 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:13 Download gff for
BO13853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ak6-RA | 122..637 | 17..532 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:13 Download gff for
BO13853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12569088..12569405 | 215..532 | 100 | <- | Minus |
2R | 12569461..12569612 | 63..214 | 100 | <- | Minus |
2R | 12569681..12569726 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:17 Download gff for
BO13853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8456593..8456910 | 215..532 | 100 | <- | Minus |
arm_2R | 8456966..8457117 | 63..214 | 100 | <- | Minus |
arm_2R | 8457186..8457231 | 17..62 | 100 | | Minus |
BO13853.pep Sequence
Translation from 16 to 559
> BO13853.pep
MSEPEPDVKPNILITGTPGAGKSYLCERIASELKFEWLDCSKIAKEKNFV
EEYDEEYDCPILDEEKLMDHLEPLMAKGGNVVEYHGCDFFPERWFQAVFV
VTCPNTTLYDRLKERNYNEKKLASNIQCEIFGTILEEARDSYKSDIVFEL
KGETKADAHISIKTVKNWYRMWKRKASFLDH
BO13853.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ak6-PA | 175 | CG8816-PA | 1..175 | 1..175 | 949 | 100 | Plus |