Clone BO13853 Report

Search the DGRC for BO13853

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptAk6-RA
Protein status:BO13853.pep: validated full length
Sequenced Size:559

Clone Sequence Records

BO13853.3prime Sequence

557 bp (556 high quality bases) assembled on 2006-05-08

> BO13853.3prime
ATGGTCTAGAAAGCTTGCTTTTCTTTTCCACATACGATACCAGTTTTTGA
CTGTTTTTATGCTTATATGGGCATCTGCCTTTGTTTCGCCCTTAAGTTCG
AATACTATATCTGATTTGTAGGAATCGCGGGCCTCTTCCAAAATGGTTCC
AAAGATCTCGCACTGAATATTGGATGCCAGTTTCTTTTCGTTGTAGTTGC
GCTCCTTCAGACGATCGTAGAGTGTTGTATTGGGACAGGTTACCACGAAG
ACGGCTTGAAACCAGCGCTCTGGAAAGAAATCACAGCCATGATACTCGAC
GACGTTGCCCCCCTTTGCCATCAGGGGCTCCAAGTGATCCATCAGCTTTT
CTTCATCCAGAATGGGACAATCGTACTCCTCGTCATATTCCTCTACAAAA
TTTTTCTCCTTGGCGATTTTGGAGCAGTCCAGCCACTCAAACTTTAGTTC
GGAGGCTATACGTTCGCATAAATACGATTTCCCCGCTCCAGGAGTTCCGG
TTATTAGTATGTTGGGCTTGACATCTGGCTCTGGTTCTGACATGTCGACT
GATAACT

BO13853.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8816-PA 528 CG8816-RA 1..525 543..19 2625 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Ak6-RA 711 CG8816-RA 122..646 543..19 2625 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12569079..12569407 19..347 1645 100 Plus
2R 25286936 2R 12569461..12569613 346..498 765 100 Plus
2R 25286936 2R 12569680..12569726 497..543 235 100 Plus
Blast to na_te.dros performed on 2015-01-31 11:38:53 has no hits.

BO13853.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:49 Download gff for BO13853.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8816-PA 1..528 15..543 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:58 Download gff for BO13853.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8816-PA 1..528 15..543 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:51:02 Download gff for BO13853.3prime
Subject Subject Range Query Range Percent Splice Strand
Ak6-RA 118..649 15..550 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:57:19 Download gff for BO13853.3prime
Subject Subject Range Query Range Percent Splice Strand
Ak6-RA 118..649 15..550 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:57:19 Download gff for BO13853.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12569075..12569405 15..345 99 <- Plus
2R 12569461..12569612 346..497 100 <- Plus
2R 12569681..12569730 498..550 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:51:02 Download gff for BO13853.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8456580..8456910 15..345 99 <- Plus
arm_2R 8456966..8457117 346..497 100 <- Plus
arm_2R 8457186..8457235 498..550 92   Plus

BO13853.5prime Sequence

557 bp (556 high quality bases) assembled on 2006-05-08

> BO13853.5prime
GAAGTTATCAGTCGACATGTCAGAACCAGAGCCAGATGTCAAGCCCAACA
TACTAATAACCGGAACTCCTGGAGCGGGGAAATCGTATTTATGCGAACGT
ATAGCCTCCGAACTAAAGTTTGAGTGGCTGGACTGCTCCAAAATCGCCAA
GGAGAAAAATTTTGTAGAGGAATATGACGAGGAGTACGATTGTCCCATTC
TGGATGAAGAAAAGCTGATGGATCACTTGGAGCCCCTGATGGCAAAGGGG
GGCAACGTCGTCGAGTATCATGGCTGTGATTTCTTTCCAGAGCGCTGGTT
TCAAGCCGTCTTCGTGGTAACCTGTCCCAATACAACACTCTACGATCGTC
TGAAGGAGCGCAACTACAACGAAAAGAAACTGGCATCCAATATTCAGTGC
GAGATCTTTGGAACCATTTTGGAAGAGGCCCGCGATTCCTACAAATCAGA
TATAGTATTCGAACTTAAGGGCGAAACAAAGGCAGATGCCCATATAAGCA
TAAAAACAGTCAAAAACTGGTATCGTATGTGGAAAAGAAAAGCAAGCTTT
CTAGACC

BO13853.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8816-PA 528 CG8816-RA 1..525 17..541 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
Ak6-RA 711 CG8816-RA 122..646 17..541 2625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12569079..12569407 541..213 1645 100 Minus
2R 25286936 2R 12569461..12569613 214..62 765 100 Minus
2R 25286936 2R 12569680..12569726 63..17 235 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:58:35 has no hits.

BO13853.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:50 Download gff for BO13853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8816-PA 1..528 17..545 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:59 Download gff for BO13853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8816-PA 1..528 17..545 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:17:15 Download gff for BO13853.5prime
Subject Subject Range Query Range Percent Splice Strand
Ak6-RA 118..649 10..545 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:16 Download gff for BO13853.5prime
Subject Subject Range Query Range Percent Splice Strand
Ak6-RA 118..649 10..545 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:16 Download gff for BO13853.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12569681..12569730 10..62 92   Minus
2R 12569075..12569405 215..545 99 <- Minus
2R 12569461..12569612 63..214 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:17:15 Download gff for BO13853.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8456580..8456910 215..545 99 <- Minus
arm_2R 8456966..8457117 63..214 100 <- Minus
arm_2R 8457186..8457235 10..62 92   Minus

BO13853.complete Sequence

559 bp assembled on 2006-10-11

GenBank Submission: FJ632952

> BO13853.complete
GAAGTTATCAGTCGACATGTCAGAACCAGAGCCAGATGTCAAGCCCAACA
TACTAATAACCGGAACTCCTGGAGCGGGGAAATCGTATTTATGCGAACGT
ATAGCCTCCGAACTAAAGTTTGAGTGGCTGGACTGCTCCAAAATCGCCAA
GGAGAAAAATTTTGTAGAGGAATATGACGAGGAGTACGATTGTCCCATTC
TGGATGAAGAAAAGCTGATGGATCACTTGGAGCCCCTGATGGCAAAGGGG
GGCAACGTCGTCGAGTATCATGGCTGTGATTTCTTTCCAGAGCGCTGGTT
TCAAGCCGTCTTCGTGGTAACCTGTCCCAATACAACACTCTACGATCGTC
TGAAGGAGCGCAACTACAACGAAAAGAAACTGGCATCCAATATTCAGTGC
GAGATCTTTGGAACCATTTTGGAAGAGGCCCGCGATTCCTACAAATCAGA
TATAGTATTCGAACTTAAGGGCGAAACAAAGGCAGATGCCCATATAAGCA
TAAAAACAGTCAAAAACTGGTATCGTATGTGGAAAAGAAAAGCAAGCTTT
CTAGACCAT

BO13853.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
Ak6-RA 528 CG8816-PA 1..525 17..541 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
Ak6-RA 711 CG8816-RA 122..646 17..541 2625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12569079..12569407 541..213 1645 100 Minus
2R 25286936 2R 12569461..12569613 214..62 765 100 Minus
2R 25286936 2R 12569680..12569726 63..17 235 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:04:20 has no hits.

BO13853.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:54 Download gff for BO13853.complete
Subject Subject Range Query Range Percent Splice Strand
CG8816-RA 1..528 17..545 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:57 Download gff for BO13853.complete
Subject Subject Range Query Range Percent Splice Strand
CG8816-RA 138..669 10..545 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:17 Download gff for BO13853.complete
Subject Subject Range Query Range Percent Splice Strand
Ak6-RA 122..637 17..532 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:55 Download gff for BO13853.complete
Subject Subject Range Query Range Percent Splice Strand
CG8816-RA 138..669 10..545 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:13 Download gff for BO13853.complete
Subject Subject Range Query Range Percent Splice Strand
Ak6-RA 122..637 17..532 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:13 Download gff for BO13853.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12569088..12569405 215..532 100 <- Minus
2R 12569461..12569612 63..214 100 <- Minus
2R 12569681..12569726 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:17 Download gff for BO13853.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8456593..8456910 215..532 100 <- Minus
arm_2R 8456966..8457117 63..214 100 <- Minus
arm_2R 8457186..8457231 17..62 100   Minus

BO13853.pep Sequence

Translation from 16 to 559

> BO13853.pep
MSEPEPDVKPNILITGTPGAGKSYLCERIASELKFEWLDCSKIAKEKNFV
EEYDEEYDCPILDEEKLMDHLEPLMAKGGNVVEYHGCDFFPERWFQAVFV
VTCPNTTLYDRLKERNYNEKKLASNIQCEIFGTILEEARDSYKSDIVFEL
KGETKADAHISIKTVKNWYRMWKRKASFLDH

BO13853.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ak6-PA 175 CG8816-PA 1..175 1..175 949 100 Plus