Clone BO13856 Report

Search the DGRC for BO13856

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptRpL34b-RA
Protein status:BO13856.pep:
Sequenced Size:538

Clone Sequence Records

BO13856.3prime Sequence

536 bp (535 high quality bases) assembled on 2006-05-08

> BO13856.3prime
ATGGTCTAGAAAGCTTGCCTTCCTGGGCTTGCCAGCGGCTGGCTTCTGGC
CGGGCTTCTTGCCAGCGGCTCCCTTGGCGCCAGCACCACCCTTGGTGACC
TTGCCGGCACCGGCCTTGGTTCCCTTGGCTCCAGCAGCGGGCTTCTTCTT
GGGCTCGGGCTTGGCCTTGGGGGCCTTCACCGGCTTGACGAGCGCCTCGC
GCTGGCTCTTCAGGGCCTTGACGATCTTCTGCTCCTCGATGAGGAAGGCG
CGCACGATACGCTCGCGCAGGCAGCTGTGGCACAGCACTCCACCGTAGGT
CCTGGACACGGTCTTCAGGCGCTTGGACATGCGGGGGCGCTCGCTGGGGC
GGGAGGGGGTGATACCCTTCAACTTCTCCTTGCACTGGCCGCAACGGGGC
ACGGTGGGGTTCTTCTTCACATACTGGTAAACCAGACGACCACCGGGCGT
GCGAACAATGCGCCGCTTGTTGGAGCGTGTGTTGTAGGACAGGCGTCTCC
GGAGCGTCAGACGTTGGACCATGTCGACTGATAACT

BO13856.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9354-PB 507 RpL34b-RB 1..504 522..19 2520 100 Minus
CG9354-PA 507 RpL34b-RA 1..504 522..19 2520 100 Minus
CG6090-PA 489 RpL34a-RA 160..329 363..194 425 90 Minus
CG6090-PB 489 RpL34a-RB 160..329 363..194 425 90 Minus
CG6090-PA 489 RpL34a-RA 31..149 492..374 245 88.2 Minus
CG6090-PB 489 RpL34a-RB 31..149 492..374 245 88.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
RpL34b-RD 622 CG9354-RD 48..551 522..19 2520 100 Minus
RpL34b-RC 589 CG9354-RC 15..518 522..19 2520 100 Minus
RpL34b-RA 771 CG9354-RA 197..700 522..19 2520 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9400440..9400878 19..457 2195 100 Plus
3R 32079331 3R 26058635..26058917 175..457 830 86.2 Plus
3R 32079331 3R 9400942..9401006 458..522 325 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:29:42 has no hits.

BO13856.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:53 Download gff for BO13856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9354-PA 1..507 15..522 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:04 Download gff for BO13856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9354-PA 1..507 15..522 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:50 Download gff for BO13856.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 190..703 15..530 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:21:45 Download gff for BO13856.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 190..703 15..530 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:21:45 Download gff for BO13856.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9400436..9400878 15..457 99 <- Plus
3R 9400942..9401013 458..530 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:50 Download gff for BO13856.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5226158..5226600 15..457 99 <- Plus
arm_3R 5226664..5226735 458..530 95   Plus

BO13856.5prime Sequence

536 bp (535 high quality bases) assembled on 2006-05-08

> BO13856.5prime
GAAGTTATCAGTCGACATGGTCCAACGTCTGACGCTCCGGAGACGCCTGT
CCTACAACACACGCTCCAACAAGCGGCGCATTGTTCGCACGCCCGGTGGT
CGTCTGGTTTACCAGTATGTGAAGAAGAACCCCACCGTGCCCCGTTGCGG
CCAGTGCAAGGAGAAGTTGAAGGGTATCACCCCCTCCCGCCCCAGCGAGC
GCCCCCGCATGTCCAAGCGCCTGAAGACCGTGTCCAGGACCTACGGTGGA
GTGCTGTGCCACAGCTGCCTGCGCGAGCGTATCGTGCGCGCCTTCCTCAT
CGAGGAGCAGAAGATCGTCAAGGCCCTGAAGAGCCAGCGCGAGGCGCTCG
TCAAGCCGGTGAAGGCCCCCAAGGCCAAGCCCGAGCCCAAGAAGAAGCCC
GCTGCTGGAGCCAAGGGAACCAAGGCCGGTGCCGGCAAGGTCACCAAGGG
TGGTGCTGGCGCCAAGGGAGCCGCTGGCAAGAAGCCCGGCCAGAAGCCAG
CCGCTGGCAAGCCCAGGAAGGCAAGCTTTCTAGACC

BO13856.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9354-PB 507 RpL34b-RB 1..504 17..520 2520 100 Plus
CG9354-PA 507 RpL34b-RA 1..504 17..520 2520 100 Plus
CG6090-PA 489 RpL34a-RA 160..329 176..345 425 90 Plus
CG6090-PB 489 RpL34a-RB 160..329 176..345 425 90 Plus
CG6090-PA 489 RpL34a-RA 31..149 47..165 245 88.2 Plus
CG6090-PB 489 RpL34a-RB 31..149 47..165 245 88.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
RpL34b-RD 622 CG9354-RD 48..551 17..520 2520 100 Plus
RpL34b-RC 589 CG9354-RC 15..518 17..520 2520 100 Plus
RpL34b-RA 771 CG9354-RA 197..700 17..520 2520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9400440..9400878 520..82 2195 100 Minus
3R 32079331 3R 26058635..26058917 364..82 830 86.2 Minus
3R 32079331 3R 9400942..9401006 81..17 325 100 Minus
Blast to na_te.dros performed on 2015-02-09 23:41:41 has no hits.

BO13856.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:54 Download gff for BO13856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9354-PA 1..507 17..524 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:05 Download gff for BO13856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9354-PA 1..507 17..524 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:29:46 Download gff for BO13856.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 190..703 9..524 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:57:25 Download gff for BO13856.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 190..703 9..524 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:57:25 Download gff for BO13856.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9400436..9400878 82..524 99 <- Minus
3R 9400942..9401013 9..81 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:29:46 Download gff for BO13856.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5226664..5226735 9..81 95   Minus
arm_3R 5226158..5226600 82..524 99 <- Minus

BO13856.complete Sequence

538 bp assembled on 2007-06-22

GenBank Submission: FJ632953

> BO13856.complete
GAAGTTATCAGTCGACATGGTCCAACGTCTGACGCTCCGGAGACGCCTGT
CCTACAACACACGCTCCAACAAGCGGCGCATTGTTCGCACGCCCGGTGGT
CGTCTGGTTTACCAGTATGTGAAGAAGAACCCCACCGTGCCCCGTTGCGG
CCAGTGCAAGGAGAAGTTGAAGGGTATCACCCCCTCCCGCCCCAGCGAGC
GCCCCCGCATGTCCAAGCGCCTGAAGACCGTGTCCAGGACCTACGGTGGA
GTGCTGTGCCACAGCTGCCTGCGCGAGCGTATCGTGCGCGCCTTCCTCAT
CGAGGAGCAGAAGATCGTCAAGGCCCTGAAGAGCCAGCGCGAGGCGCTCG
TCAAGCCGGTGAAGGCCCCCAAGGCCAAGCCCGAGCCCAAGAAGAAGCCC
GCTGCTGGAGCCAAGGGAACCAAGGCCGGTGCCGGCAAGGTCACCAAGGG
TGGTGCTGGCGCCAAGGGAGCCGCTGGCAAGAAGCCCGGCCAGAAGCCAG
CCGCTGGCAAGCCCAGGAAGGCAAGCTTTCTAGACCAT

BO13856.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
RpL34b-RD 507 CG9354-PD 1..504 17..520 2520 100 Plus
RpL34b-RC 507 CG9354-PC 1..504 17..520 2520 100 Plus
RpL34b-RA 507 CG9354-PA 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
RpL34b-RD 622 CG9354-RD 48..551 17..520 2520 100 Plus
RpL34b-RC 589 CG9354-RC 15..518 17..520 2520 100 Plus
RpL34b-RA 771 CG9354-RA 197..700 17..520 2520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9400440..9400878 520..82 2195 100 Minus
3R 32079331 3R 26058635..26058917 364..82 830 86.2 Minus
3R 32079331 3R 9400942..9401006 81..17 325 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:06:37 has no hits.

BO13856.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:04 Download gff for BO13856.complete
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 1..507 17..524 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:33 Download gff for BO13856.complete
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 190..703 9..524 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:10 Download gff for BO13856.complete
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 197..700 17..522 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:04 Download gff for BO13856.complete
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 190..703 9..524 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:11 Download gff for BO13856.complete
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 197..700 17..522 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:11 Download gff for BO13856.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9400438..9400878 82..522 99 <- Minus
3R 9400942..9401006 17..81 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:10 Download gff for BO13856.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5226160..5226600 82..522 99 <- Minus
arm_3R 5226664..5226728 17..81 100   Minus

BO13856.pep Sequence

Translation from 16 to 538

> BO13856.pep
MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEK
LKGITPSRPSERPRMSKRLKTVSRTYGGVLCHSCLRERIVRAFLIEEQKI
VKALKSQREALVKPVKAPKAKPEPKKKPAAGAKGTKAGAGKVTKGGAGAK
GAAGKKPGQKPAAGKPRKASFLDH

BO13856.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
RpL34b-PD 168 CG9354-PD 1..168 1..168 864 100 Plus
RpL34b-PC 168 CG9354-PC 1..168 1..168 864 100 Plus
RpL34b-PA 168 CG9354-PA 1..168 1..168 864 100 Plus
RpL34b-PB 168 CG9354-PB 1..168 1..168 864 100 Plus
RpL34a-PC 162 CG6090-PC 1..153 1..162 618 82.7 Plus