Clone Sequence Records
BO13856.3prime Sequence
536 bp (535 high quality bases) assembled on 2006-05-08
> BO13856.3prime
ATGGTCTAGAAAGCTTGCCTTCCTGGGCTTGCCAGCGGCTGGCTTCTGGC
CGGGCTTCTTGCCAGCGGCTCCCTTGGCGCCAGCACCACCCTTGGTGACC
TTGCCGGCACCGGCCTTGGTTCCCTTGGCTCCAGCAGCGGGCTTCTTCTT
GGGCTCGGGCTTGGCCTTGGGGGCCTTCACCGGCTTGACGAGCGCCTCGC
GCTGGCTCTTCAGGGCCTTGACGATCTTCTGCTCCTCGATGAGGAAGGCG
CGCACGATACGCTCGCGCAGGCAGCTGTGGCACAGCACTCCACCGTAGGT
CCTGGACACGGTCTTCAGGCGCTTGGACATGCGGGGGCGCTCGCTGGGGC
GGGAGGGGGTGATACCCTTCAACTTCTCCTTGCACTGGCCGCAACGGGGC
ACGGTGGGGTTCTTCTTCACATACTGGTAAACCAGACGACCACCGGGCGT
GCGAACAATGCGCCGCTTGTTGGAGCGTGTGTTGTAGGACAGGCGTCTCC
GGAGCGTCAGACGTTGGACCATGTCGACTGATAACT
BO13856.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9354-PB | 507 | RpL34b-RB | 1..504 | 522..19 | 2520 | 100 | Minus |
CG9354-PA | 507 | RpL34b-RA | 1..504 | 522..19 | 2520 | 100 | Minus |
CG6090-PA | 489 | RpL34a-RA | 160..329 | 363..194 | 425 | 90 | Minus |
CG6090-PB | 489 | RpL34a-RB | 160..329 | 363..194 | 425 | 90 | Minus |
CG6090-PA | 489 | RpL34a-RA | 31..149 | 492..374 | 245 | 88.2 | Minus |
CG6090-PB | 489 | RpL34a-RB | 31..149 | 492..374 | 245 | 88.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:29:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL34b-RD | 622 | CG9354-RD | 48..551 | 522..19 | 2520 | 100 | Minus |
RpL34b-RC | 589 | CG9354-RC | 15..518 | 522..19 | 2520 | 100 | Minus |
RpL34b-RA | 771 | CG9354-RA | 197..700 | 522..19 | 2520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:29:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9400440..9400878 | 19..457 | 2195 | 100 | Plus |
3R | 32079331 | 3R | 26058635..26058917 | 175..457 | 830 | 86.2 | Plus |
3R | 32079331 | 3R | 9400942..9401006 | 458..522 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:29:42 has no hits.
BO13856.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:53 Download gff for
BO13856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9354-PA | 1..507 | 15..522 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:04 Download gff for
BO13856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9354-PA | 1..507 | 15..522 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:50 Download gff for
BO13856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 190..703 | 15..530 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:21:45 Download gff for
BO13856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 190..703 | 15..530 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:21:45 Download gff for
BO13856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9400436..9400878 | 15..457 | 99 | <- | Plus |
3R | 9400942..9401013 | 458..530 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:50 Download gff for
BO13856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5226158..5226600 | 15..457 | 99 | <- | Plus |
arm_3R | 5226664..5226735 | 458..530 | 95 | | Plus |
BO13856.5prime Sequence
536 bp (535 high quality bases) assembled on 2006-05-08
> BO13856.5prime
GAAGTTATCAGTCGACATGGTCCAACGTCTGACGCTCCGGAGACGCCTGT
CCTACAACACACGCTCCAACAAGCGGCGCATTGTTCGCACGCCCGGTGGT
CGTCTGGTTTACCAGTATGTGAAGAAGAACCCCACCGTGCCCCGTTGCGG
CCAGTGCAAGGAGAAGTTGAAGGGTATCACCCCCTCCCGCCCCAGCGAGC
GCCCCCGCATGTCCAAGCGCCTGAAGACCGTGTCCAGGACCTACGGTGGA
GTGCTGTGCCACAGCTGCCTGCGCGAGCGTATCGTGCGCGCCTTCCTCAT
CGAGGAGCAGAAGATCGTCAAGGCCCTGAAGAGCCAGCGCGAGGCGCTCG
TCAAGCCGGTGAAGGCCCCCAAGGCCAAGCCCGAGCCCAAGAAGAAGCCC
GCTGCTGGAGCCAAGGGAACCAAGGCCGGTGCCGGCAAGGTCACCAAGGG
TGGTGCTGGCGCCAAGGGAGCCGCTGGCAAGAAGCCCGGCCAGAAGCCAG
CCGCTGGCAAGCCCAGGAAGGCAAGCTTTCTAGACC
BO13856.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9354-PB | 507 | RpL34b-RB | 1..504 | 17..520 | 2520 | 100 | Plus |
CG9354-PA | 507 | RpL34b-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
CG6090-PA | 489 | RpL34a-RA | 160..329 | 176..345 | 425 | 90 | Plus |
CG6090-PB | 489 | RpL34a-RB | 160..329 | 176..345 | 425 | 90 | Plus |
CG6090-PA | 489 | RpL34a-RA | 31..149 | 47..165 | 245 | 88.2 | Plus |
CG6090-PB | 489 | RpL34a-RB | 31..149 | 47..165 | 245 | 88.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL34b-RD | 622 | CG9354-RD | 48..551 | 17..520 | 2520 | 100 | Plus |
RpL34b-RC | 589 | CG9354-RC | 15..518 | 17..520 | 2520 | 100 | Plus |
RpL34b-RA | 771 | CG9354-RA | 197..700 | 17..520 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9400440..9400878 | 520..82 | 2195 | 100 | Minus |
3R | 32079331 | 3R | 26058635..26058917 | 364..82 | 830 | 86.2 | Minus |
3R | 32079331 | 3R | 9400942..9401006 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:41:41 has no hits.
BO13856.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:54 Download gff for
BO13856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9354-PA | 1..507 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:05 Download gff for
BO13856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9354-PA | 1..507 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:29:46 Download gff for
BO13856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 190..703 | 9..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:57:25 Download gff for
BO13856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 190..703 | 9..524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:57:25 Download gff for
BO13856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9400436..9400878 | 82..524 | 99 | <- | Minus |
3R | 9400942..9401013 | 9..81 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:29:46 Download gff for
BO13856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5226664..5226735 | 9..81 | 95 | | Minus |
arm_3R | 5226158..5226600 | 82..524 | 99 | <- | Minus |
BO13856.complete Sequence
538 bp assembled on 2007-06-22
GenBank Submission: FJ632953
> BO13856.complete
GAAGTTATCAGTCGACATGGTCCAACGTCTGACGCTCCGGAGACGCCTGT
CCTACAACACACGCTCCAACAAGCGGCGCATTGTTCGCACGCCCGGTGGT
CGTCTGGTTTACCAGTATGTGAAGAAGAACCCCACCGTGCCCCGTTGCGG
CCAGTGCAAGGAGAAGTTGAAGGGTATCACCCCCTCCCGCCCCAGCGAGC
GCCCCCGCATGTCCAAGCGCCTGAAGACCGTGTCCAGGACCTACGGTGGA
GTGCTGTGCCACAGCTGCCTGCGCGAGCGTATCGTGCGCGCCTTCCTCAT
CGAGGAGCAGAAGATCGTCAAGGCCCTGAAGAGCCAGCGCGAGGCGCTCG
TCAAGCCGGTGAAGGCCCCCAAGGCCAAGCCCGAGCCCAAGAAGAAGCCC
GCTGCTGGAGCCAAGGGAACCAAGGCCGGTGCCGGCAAGGTCACCAAGGG
TGGTGCTGGCGCCAAGGGAGCCGCTGGCAAGAAGCCCGGCCAGAAGCCAG
CCGCTGGCAAGCCCAGGAAGGCAAGCTTTCTAGACCAT
BO13856.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL34b-RD | 507 | CG9354-PD | 1..504 | 17..520 | 2520 | 100 | Plus |
RpL34b-RC | 507 | CG9354-PC | 1..504 | 17..520 | 2520 | 100 | Plus |
RpL34b-RA | 507 | CG9354-PA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL34b-RD | 622 | CG9354-RD | 48..551 | 17..520 | 2520 | 100 | Plus |
RpL34b-RC | 589 | CG9354-RC | 15..518 | 17..520 | 2520 | 100 | Plus |
RpL34b-RA | 771 | CG9354-RA | 197..700 | 17..520 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9400440..9400878 | 520..82 | 2195 | 100 | Minus |
3R | 32079331 | 3R | 26058635..26058917 | 364..82 | 830 | 86.2 | Minus |
3R | 32079331 | 3R | 9400942..9401006 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:06:37 has no hits.
BO13856.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:04 Download gff for
BO13856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 1..507 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:33 Download gff for
BO13856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 190..703 | 9..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:10 Download gff for
BO13856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 197..700 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:04 Download gff for
BO13856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 190..703 | 9..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:11 Download gff for
BO13856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 197..700 | 17..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:11 Download gff for
BO13856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9400438..9400878 | 82..522 | 99 | <- | Minus |
3R | 9400942..9401006 | 17..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:10 Download gff for
BO13856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5226160..5226600 | 82..522 | 99 | <- | Minus |
arm_3R | 5226664..5226728 | 17..81 | 100 | | Minus |
BO13856.pep Sequence
Translation from 16 to 538
> BO13856.pep
MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEK
LKGITPSRPSERPRMSKRLKTVSRTYGGVLCHSCLRERIVRAFLIEEQKI
VKALKSQREALVKPVKAPKAKPEPKKKPAAGAKGTKAGAGKVTKGGAGAK
GAAGKKPGQKPAAGKPRKASFLDH
BO13856.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL34b-PD | 168 | CG9354-PD | 1..168 | 1..168 | 864 | 100 | Plus |
RpL34b-PC | 168 | CG9354-PC | 1..168 | 1..168 | 864 | 100 | Plus |
RpL34b-PA | 168 | CG9354-PA | 1..168 | 1..168 | 864 | 100 | Plus |
RpL34b-PB | 168 | CG9354-PB | 1..168 | 1..168 | 864 | 100 | Plus |
RpL34a-PC | 162 | CG6090-PC | 1..153 | 1..162 | 618 | 82.7 | Plus |