Clone BO13858 Report

Search the DGRC for BO13858

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptArpc5-RA
Protein status:BO13858.pep: validated full length
Sequenced Size:487

Clone Sequence Records

BO13858.3prime Sequence

485 bp (484 high quality bases) assembled on 2006-05-08

> BO13858.3prime
ATGGTCTAGAAAGCTTGCGGCGCGATTTGTGTCGGACAGCACGCGGACAA
TGCAGCCCACTCCTCCCTTGGCGAAGGCCTTCTCATGCCACTGCAGCAGG
TGGCCACTGGAGCCCTCCGAGGGGATCTCGAATCCCCGATATATGTACTT
CATCAGCACGTCTATTAGGTCGTTCTGGTCCAAGGTGTCGATGGCCTGGT
CCATTTGCGTCGACTTGATGGACAGCAGCACCCGCAGCGTGATGTTCAGG
GCGTGGTCCTTCACATTCTGGTTCTTGCAGCGCAGCGGGGCATTCTGCAG
CGCACTCAGGAGCGCCTCCACGGATTTTCCCTGCGTCAGCAGCGTCGTAA
TCTCGCTCTCATCCGGACCGGCTGCCGCGCTCTCCACCCCATCATCCTCC
CGGAAGTTGTCCTCATTGTACTGGTCCACATCGATCTTGCGGAACGCGTT
GCTGGACGTGTTTTTGGCCATGTCGACTGATAACT

BO13858.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9881-PA 456 p16-ARC-RA 1..453 471..19 2265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc5-RB 1070 CG9881-RB 76..530 473..19 2275 100 Minus
Arpc5-RA 785 CG9881-RA 76..530 473..19 2275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2580642..2580883 260..19 1210 100 Minus
2L 23513712 2L 2580367..2580582 473..258 1080 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:14:34 has no hits.

BO13858.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:58 Download gff for BO13858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9881-PA 1..456 18..471 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:10 Download gff for BO13858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9881-PA 1..456 18..471 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:20:08 Download gff for BO13858.3prime
Subject Subject Range Query Range Percent Splice Strand
Arpc5-RA 76..530 19..473 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:33 Download gff for BO13858.3prime
Subject Subject Range Query Range Percent Splice Strand
Arpc5-RA 76..530 19..473 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:33 Download gff for BO13858.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2580367..2580581 259..473 100 -> Minus
2L 2580644..2580883 19..258 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:20:08 Download gff for BO13858.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2580367..2580581 259..473 100 -> Minus
arm_2L 2580644..2580883 19..258 100   Minus

BO13858.5prime Sequence

485 bp (484 high quality bases) assembled on 2006-05-08

> BO13858.5prime
GAAGTTATCAGTCGACATGGCCAAAAACACGTCCAGCAACGCGTTCCGCA
AGATCGATGTGGACCAGTACAATGAGGACAACTTCCGGGAGGATGATGGG
GTGGAGAGCGCGGCAGCCGGTCCGGATGAGAGCGAGATTACGACGCTGCT
GACGCAGGGAAAATCCGTGGAGGCGCTCCTGAGTGCGCTGCAGAATGCCC
CGCTGCGCTGCAAGAACCAGAATGTGAAGGACCACGCCCTGAACATCACG
CTGCGGGTGCTGCTGTCCATCAAGTCGACGCAAATGGACCAGGCCATCGA
CACCTTGGACCAGAACGACCTAATAGACGTGCTGATGAAGTACATATATC
GGGGATTCGAGATCCCCTCGGAGGGCTCCAGTGGCCACCTGCTGCAGTGG
CATGAGAAGGCCTTCGCCAAGGGAGGAGTGGGCTGCATTGTCCGCGTGCT
GTCCGACACAAATCGCGCCGCAAGCTTTCTAGACC

BO13858.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9881-PA 456 p16-ARC-RA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc5-RB 1070 CG9881-RB 76..530 15..469 2275 100 Plus
Arpc5-RA 785 CG9881-RA 76..530 15..469 2275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2580642..2580883 228..469 1210 100 Plus
2L 23513712 2L 2580367..2580582 15..230 1080 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:03:43 has no hits.

BO13858.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:58 Download gff for BO13858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9881-PA 1..456 17..470 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:11 Download gff for BO13858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9881-PA 1..456 17..470 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:07:10 Download gff for BO13858.5prime
Subject Subject Range Query Range Percent Splice Strand
Arpc5-RA 76..530 15..469 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:39:26 Download gff for BO13858.5prime
Subject Subject Range Query Range Percent Splice Strand
Arpc5-RA 76..530 15..469 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:39:26 Download gff for BO13858.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2580367..2580581 15..229 100 -> Plus
2L 2580644..2580883 230..469 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:07:10 Download gff for BO13858.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2580367..2580581 15..229 100 -> Plus
arm_2L 2580644..2580883 230..469 100   Plus

BO13858.complete Sequence

487 bp assembled on 2006-10-11

GenBank Submission: FJ632954

> BO13858.complete
GAAGTTATCAGTCGACATGGCCAAAAACACGTCCAGCAACGCGTTCCGCA
AGATCGATGTGGACCAGTACAATGAGGACAACTTCCGGGAGGATGATGGG
GTGGAGAGCGCGGCAGCCGGTCCGGATGAGAGCGAGATTACGACGCTGCT
GACGCAGGGAAAATCCGTGGAGGCGCTCCTGAGTGCGCTGCAGAATGCCC
CGCTGCGCTGCAAGAACCAGAATGTGAAGGACCACGCCCTGAACATCACG
CTGCGGGTGCTGCTGTCCATCAAGTCGACGCAAATGGACCAGGCCATCGA
CACCTTGGACCAGAACGACCTAATAGACGTGCTGATGAAGTACATATATC
GGGGATTCGAGATCCCCTCGGAGGGCTCCAGTGGCCACCTGCTGCAGTGG
CATGAGAAGGCCTTCGCCAAGGGAGGAGTGGGCTGCATTGTCCGCGTGCT
GTCCGACACAAATCGCGCCGCAAGCTTTCTAGACCAT

BO13858.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc5-RB 456 CG9881-PB 1..453 17..469 2265 100 Plus
Arpc5-RA 456 CG9881-PA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc5-RB 1070 CG9881-RB 76..530 15..469 2275 100 Plus
Arpc5-RA 785 CG9881-RA 76..530 15..469 2275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2580642..2580883 228..469 1210 100 Plus
2L 23513712 2L 2580367..2580582 15..230 1080 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:21:52 has no hits.

BO13858.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:55 Download gff for BO13858.complete
Subject Subject Range Query Range Percent Splice Strand
p16-ARC-RA 1..456 17..470 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:58 Download gff for BO13858.complete
Subject Subject Range Query Range Percent Splice Strand
p16-ARC-RA 77..531 15..469 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:48 Download gff for BO13858.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc5-RA 78..530 17..471 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:56 Download gff for BO13858.complete
Subject Subject Range Query Range Percent Splice Strand
p16-ARC-RA 77..531 15..469 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:07 Download gff for BO13858.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc5-RA 78..530 17..471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:07 Download gff for BO13858.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2580369..2580581 17..229 100 -> Plus
2L 2580644..2580883 230..471 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:48 Download gff for BO13858.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2580369..2580581 17..229 100 -> Plus
arm_2L 2580644..2580883 230..471 99   Plus

BO13858.pep Sequence

Translation from 16 to 487

> BO13858.pep
MAKNTSSNAFRKIDVDQYNEDNFREDDGVESAAAGPDESEITTLLTQGKS
VEALLSALQNAPLRCKNQNVKDHALNITLRVLLSIKSTQMDQAIDTLDQN
DLIDVLMKYIYRGFEIPSEGSSGHLLQWHEKAFAKGGVGCIVRVLSDTNR
AASFLDH

BO13858.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc5-PB 151 CG9881-PB 1..151 1..151 767 100 Plus
Arpc5-PA 151 CG9881-PA 1..151 1..151 767 100 Plus