Clone Sequence Records
BO13858.3prime Sequence
485 bp (484 high quality bases) assembled on 2006-05-08
> BO13858.3prime
ATGGTCTAGAAAGCTTGCGGCGCGATTTGTGTCGGACAGCACGCGGACAA
TGCAGCCCACTCCTCCCTTGGCGAAGGCCTTCTCATGCCACTGCAGCAGG
TGGCCACTGGAGCCCTCCGAGGGGATCTCGAATCCCCGATATATGTACTT
CATCAGCACGTCTATTAGGTCGTTCTGGTCCAAGGTGTCGATGGCCTGGT
CCATTTGCGTCGACTTGATGGACAGCAGCACCCGCAGCGTGATGTTCAGG
GCGTGGTCCTTCACATTCTGGTTCTTGCAGCGCAGCGGGGCATTCTGCAG
CGCACTCAGGAGCGCCTCCACGGATTTTCCCTGCGTCAGCAGCGTCGTAA
TCTCGCTCTCATCCGGACCGGCTGCCGCGCTCTCCACCCCATCATCCTCC
CGGAAGTTGTCCTCATTGTACTGGTCCACATCGATCTTGCGGAACGCGTT
GCTGGACGTGTTTTTGGCCATGTCGACTGATAACT
BO13858.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9881-PA | 456 | p16-ARC-RA | 1..453 | 471..19 | 2265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc5-RB | 1070 | CG9881-RB | 76..530 | 473..19 | 2275 | 100 | Minus |
Arpc5-RA | 785 | CG9881-RA | 76..530 | 473..19 | 2275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2580642..2580883 | 260..19 | 1210 | 100 | Minus |
2L | 23513712 | 2L | 2580367..2580582 | 473..258 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:14:34 has no hits.
BO13858.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:58 Download gff for
BO13858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9881-PA | 1..456 | 18..471 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:10 Download gff for
BO13858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9881-PA | 1..456 | 18..471 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:20:08 Download gff for
BO13858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc5-RA | 76..530 | 19..473 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:33 Download gff for
BO13858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc5-RA | 76..530 | 19..473 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:33 Download gff for
BO13858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2580367..2580581 | 259..473 | 100 | -> | Minus |
2L | 2580644..2580883 | 19..258 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:20:08 Download gff for
BO13858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2580367..2580581 | 259..473 | 100 | -> | Minus |
arm_2L | 2580644..2580883 | 19..258 | 100 | | Minus |
BO13858.5prime Sequence
485 bp (484 high quality bases) assembled on 2006-05-08
> BO13858.5prime
GAAGTTATCAGTCGACATGGCCAAAAACACGTCCAGCAACGCGTTCCGCA
AGATCGATGTGGACCAGTACAATGAGGACAACTTCCGGGAGGATGATGGG
GTGGAGAGCGCGGCAGCCGGTCCGGATGAGAGCGAGATTACGACGCTGCT
GACGCAGGGAAAATCCGTGGAGGCGCTCCTGAGTGCGCTGCAGAATGCCC
CGCTGCGCTGCAAGAACCAGAATGTGAAGGACCACGCCCTGAACATCACG
CTGCGGGTGCTGCTGTCCATCAAGTCGACGCAAATGGACCAGGCCATCGA
CACCTTGGACCAGAACGACCTAATAGACGTGCTGATGAAGTACATATATC
GGGGATTCGAGATCCCCTCGGAGGGCTCCAGTGGCCACCTGCTGCAGTGG
CATGAGAAGGCCTTCGCCAAGGGAGGAGTGGGCTGCATTGTCCGCGTGCT
GTCCGACACAAATCGCGCCGCAAGCTTTCTAGACC
BO13858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9881-PA | 456 | p16-ARC-RA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:03:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc5-RB | 1070 | CG9881-RB | 76..530 | 15..469 | 2275 | 100 | Plus |
Arpc5-RA | 785 | CG9881-RA | 76..530 | 15..469 | 2275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:03:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2580642..2580883 | 228..469 | 1210 | 100 | Plus |
2L | 23513712 | 2L | 2580367..2580582 | 15..230 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:03:43 has no hits.
BO13858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:58 Download gff for
BO13858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9881-PA | 1..456 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:11 Download gff for
BO13858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9881-PA | 1..456 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:07:10 Download gff for
BO13858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc5-RA | 76..530 | 15..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:39:26 Download gff for
BO13858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc5-RA | 76..530 | 15..469 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:39:26 Download gff for
BO13858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2580367..2580581 | 15..229 | 100 | -> | Plus |
2L | 2580644..2580883 | 230..469 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:07:10 Download gff for
BO13858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2580367..2580581 | 15..229 | 100 | -> | Plus |
arm_2L | 2580644..2580883 | 230..469 | 100 | | Plus |
BO13858.complete Sequence
487 bp assembled on 2006-10-11
GenBank Submission: FJ632954
> BO13858.complete
GAAGTTATCAGTCGACATGGCCAAAAACACGTCCAGCAACGCGTTCCGCA
AGATCGATGTGGACCAGTACAATGAGGACAACTTCCGGGAGGATGATGGG
GTGGAGAGCGCGGCAGCCGGTCCGGATGAGAGCGAGATTACGACGCTGCT
GACGCAGGGAAAATCCGTGGAGGCGCTCCTGAGTGCGCTGCAGAATGCCC
CGCTGCGCTGCAAGAACCAGAATGTGAAGGACCACGCCCTGAACATCACG
CTGCGGGTGCTGCTGTCCATCAAGTCGACGCAAATGGACCAGGCCATCGA
CACCTTGGACCAGAACGACCTAATAGACGTGCTGATGAAGTACATATATC
GGGGATTCGAGATCCCCTCGGAGGGCTCCAGTGGCCACCTGCTGCAGTGG
CATGAGAAGGCCTTCGCCAAGGGAGGAGTGGGCTGCATTGTCCGCGTGCT
GTCCGACACAAATCGCGCCGCAAGCTTTCTAGACCAT
BO13858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc5-RB | 456 | CG9881-PB | 1..453 | 17..469 | 2265 | 100 | Plus |
Arpc5-RA | 456 | CG9881-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc5-RB | 1070 | CG9881-RB | 76..530 | 15..469 | 2275 | 100 | Plus |
Arpc5-RA | 785 | CG9881-RA | 76..530 | 15..469 | 2275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2580642..2580883 | 228..469 | 1210 | 100 | Plus |
2L | 23513712 | 2L | 2580367..2580582 | 15..230 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:21:52 has no hits.
BO13858.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:55 Download gff for
BO13858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p16-ARC-RA | 1..456 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:58 Download gff for
BO13858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p16-ARC-RA | 77..531 | 15..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:48 Download gff for
BO13858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc5-RA | 78..530 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:56 Download gff for
BO13858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p16-ARC-RA | 77..531 | 15..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:07 Download gff for
BO13858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc5-RA | 78..530 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:07 Download gff for
BO13858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2580369..2580581 | 17..229 | 100 | -> | Plus |
2L | 2580644..2580883 | 230..471 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:48 Download gff for
BO13858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2580369..2580581 | 17..229 | 100 | -> | Plus |
arm_2L | 2580644..2580883 | 230..471 | 99 | | Plus |
BO13858.pep Sequence
Translation from 16 to 487
> BO13858.pep
MAKNTSSNAFRKIDVDQYNEDNFREDDGVESAAAGPDESEITTLLTQGKS
VEALLSALQNAPLRCKNQNVKDHALNITLRVLLSIKSTQMDQAIDTLDQN
DLIDVLMKYIYRGFEIPSEGSSGHLLQWHEKAFAKGGVGCIVRVLSDTNR
AASFLDH
BO13858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc5-PB | 151 | CG9881-PB | 1..151 | 1..151 | 767 | 100 | Plus |
Arpc5-PA | 151 | CG9881-PA | 1..151 | 1..151 | 767 | 100 | Plus |