Clone Sequence Records
BO13859.3prime Sequence
866 bp (730 high quality bases) assembled on 2006-05-08
> BO13859.3prime
ATGGTCTAGAAAGCTTGCCGTGCCCCACCGCTGCTCGCACCGCGAGTACT
TGCACAGGATGCTGGCGAACGTCTCCACGTCGAAGTGGCGTCCGCTGGGA
TGCGTGTGGAACTCGGTGAAGCGCGCGTGCCAGGGAAGCAGGCCGTAGGT
GCACGTCTGCCGGGCGAACACGATGCCCAGCTCCGGCTCCGGGGCCTCGA
ACCCGAGTCGCTTGCTCAGCATGTCGCTGATCTGCTCCGTCAGCGCTTCG
CGCTTCTGCTTAAGTAGGCTCTGCACCAACTCCGTCTTACTGTCTTCGTA
CAACTCGCGGCAGACGTCGGCGATCAGGGCATGGCCGTCGGAGGCGCTGA
TTTGATGGAGCTGCAGTTGAGGGGAATGTGAACCGTTCACATAACCATTT
GTCTTTTGTCCGTTTTTGGGCTGGTTCTCCAGTTTGCTGGGACTGGCTAC
GGGTGGCCACTTTAAGCAGCTGCCCGTGTCCGCGTTGGTGGATCGACAGA
GATCGGCCATGTCCACGTATCCCCTGCCTTTCGTCCGCCTGTCGTACAGG
CTGACGTGTTTGATGCCCACGTCCAGGGCAAAGTCGAAGATCCTGCTGAG
GAGCACCGCATCCACGCCGGCATCTACGGGGGAGATAACCAGGACCAGAT
GCTGCGGCGTCTTCGTCAACTGGGAGCGGCAGTCAGCGAGCACGCGCCGC
TCGTGCGCCTCACGTGCCGCTTTGCTGCGCCAAAGGTCATATGACCGGAC
GGCCAGTGCATTCAGTCGCTCTCGGAGCCGCCACATCAGTTCGTAGCCGC
CGACCAGGAGCAGCAAGATCCTGCCCAGCAGCAGGCACAGCACCTCGATC
ATGTCGACTGATAACT
BO13859.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4775-PA | 837 | l(2)k00619-RA | 1..834 | 852..19 | 4145 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango14-RB | 1198 | CG4775-RB | 240..1075 | 854..19 | 4165 | 99.9 | Minus |
Tango14-RA | 1272 | CG4775-RA | 314..1149 | 854..19 | 4165 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1158974..1159467 | 854..361 | 2455 | 99.8 | Minus |
2L | 23513712 | 2L | 1159753..1160097 | 363..19 | 1725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:14:57 has no hits.
BO13859.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:59 Download gff for
BO13859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4775-PA | 1..837 | 18..852 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:12 Download gff for
BO13859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4775-PA | 1..837 | 18..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:25 Download gff for
BO13859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 314..1154 | 13..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:46:46 Download gff for
BO13859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 314..1154 | 13..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:46:46 Download gff for
BO13859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1159756..1160102 | 13..360 | 99 | | Minus |
2L | 1158974..1159467 | 361..854 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:25 Download gff for
BO13859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1158974..1159467 | 361..854 | 99 | -> | Minus |
arm_2L | 1159756..1160102 | 13..360 | 99 | | Minus |
BO13859.5prime Sequence
840 bp (722 high quality bases) assembled on 2006-05-08
> BO13859.5prime
GAAGTTATCAGTCGACATGATCGAGGTGCTGTGCCTGCTGCTGGGCAGGA
TCCTGCTGCTCCTGGTCGGCGGCTACGAACTGATGTGGCGGCTCCGAGAG
CGACTGAATGCACTGGCCGTCCGGTCATATGACCTTTGGCGCAGCAAAGC
GGCACGTGAGGCGCACGAGCGGCGCGTGCTCGCTGACTGCCGCTCCCAGT
TGACGAAGACGCCGCAGCATCTGGTCCTGGTTATCTCCCCCGTAGATGCC
GGCGTGGATGCGGTGCTCCTCAGCAGGATCTTCGACTTTGCCCTGGACGT
GGGCATCAAACACGTCAGCCTGTACGACAGGCGGACGAAAGGCAGGGGAT
ACGTGGACATGGCCGATCTCTGTCGATCCACCAACGCGGACACGGGCAGC
TGCTTAAAGTGGCCACCCGTAGCCAGTCCCAGCAAACTGGAGAACCAGCC
CAAAAACGGACAAAAGACAAATGGTTATGTGAACGGTTCACATTCCCCTC
AACTGCAGCTCCATCAAATCAGCGCCTCCGACGGCCATGCCCTGATCGCC
GACGTCTGCCGCGAGTTGTACGAAGACAGTAAGACGGAGTTGGTGCAGAG
CCTACTTAAGCAGAAGCGCGAAGCGCTGACGGAGCAGATCAGCGACATGC
TGAGCAAGCGACTCGGGTTCGAGGCCCCGGAGCCGGAGCTGGGCATCGTG
TTCGCCCGGCAGACGTGCACCTACGGCCTGCTTCCCTGGCACGCGCGCTT
CACCGAGTTCCACACGCATCCCAGCGGACGCCACTTCGACGTGGAGACGT
TCGCCAGCATCCTGTGCAAGTACTCGCGGTGCGAGCAGCG
BO13859.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4775-PA | 837 | l(2)k00619-RA | 1..824 | 17..840 | 4120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango14-RB | 1198 | CG4775-RB | 240..1065 | 15..840 | 4130 | 100 | Plus |
Tango14-RA | 1272 | CG4775-RA | 314..1139 | 15..840 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1158974..1159467 | 15..508 | 2470 | 100 | Plus |
2L | 23513712 | 2L | 1159753..1160087 | 506..840 | 1675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:58:15 has no hits.
BO13859.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:00 Download gff for
BO13859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4775-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:14 Download gff for
BO13859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4775-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:17:12 Download gff for
BO13859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 314..1139 | 15..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:12 Download gff for
BO13859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 314..1139 | 15..840 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:12 Download gff for
BO13859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1158974..1159467 | 15..508 | 100 | -> | Plus |
2L | 1159756..1160087 | 509..840 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:17:12 Download gff for
BO13859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1158974..1159467 | 15..508 | 100 | -> | Plus |
arm_2L | 1159756..1160087 | 509..840 | 100 | | Plus |
BO13859.complete Sequence
868 bp assembled on 2006-10-11
GenBank Submission: FJ632955
> BO13859.complete
GAAGTTATCAGTCGACATGATCGAGGTGCTGTGCCTGCTGCTGGGCAGGA
TCCTGCTGCTCCTGGTCGGCGGCTACGAACTGATGTGGCGGCTCCGAGAG
CGACTGAATGCACTGGCCGTCCGGTCATATGACCTTTGGCGCAGCAAAGC
GGCACGTGAGGCGCACGAGCGGCGCGTGCTCGCTGACTGCCGCTCCCAGT
TGACGAAGACGCCGCAGCATCTGGTCCTGGTTATCTCCCCCGTAGATGCC
GGCGTGGATGCGGTGCTCCTCAGCAGGATCTTCGACTTTGCCCTGGACGT
GGGCATCAAACACGTCAGCCTGTACGACAGGCGGACGAAAGGCAGGGGAT
ACGTGGACATGGCCGATCTCTGTCGATCCACCAACGCGGACACGGGCAGC
TGCTTAAAGTGGCCACCCGTAGCCAGTCCCAGCAAACTGGAGAACCAGCC
CAAAAACGGACAAAAGACAAATGGTTATGTGAACGGTTCACATTCCCCTC
AACTGCAGCTCCATCAAATCAGCGCCTCCGACGGCCATGCCCTGATCGCC
GACGTCTGCCGCGAGTTGTACGAAGACAGTAAGACGGAGTTGGTGCAGAG
CCTACTTAAGCAGAAGCGCGAAGCGCTGACGGAGCAGATCAGCGACATGC
TGAGCAAGCGACTCGGGTTCGAGGCCCCGGAGCCGGAGCTGGGCATCGTG
TTCGCCCGGCAGACGTGCACCTACGGCCTGCTTCCCTGGCACGCGCGCTT
CACCGAGTTCCACACGCATCCCAGCGGACGCCACTTCGACGTGGAGACGT
TCGCCAGCATCCTGTGCAAGTACTCGCGGTGCGAGCAGCGGTGGGGCACG
GCAAGCTTTCTAGACCAT
BO13859.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango14-RB | 837 | CG4775-PB | 1..834 | 17..850 | 4170 | 100 | Plus |
Tango14-RA | 837 | CG4775-PA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango14-RB | 1198 | CG4775-RB | 240..1075 | 15..850 | 4180 | 100 | Plus |
Tango14-RA | 1272 | CG4775-RA | 314..1149 | 15..850 | 4180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1158974..1159467 | 15..508 | 2470 | 100 | Plus |
2L | 23513712 | 2L | 1159753..1160097 | 506..850 | 1725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:33:14 has no hits.
BO13859.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:25 Download gff for
BO13859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 1..837 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:16 Download gff for
BO13859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 296..1136 | 15..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:37 Download gff for
BO13859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 316..1149 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:26 Download gff for
BO13859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 296..1136 | 15..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:05 Download gff for
BO13859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 316..1149 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:05 Download gff for
BO13859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1159756..1160097 | 509..852 | 99 | | Plus |
2L | 1158976..1159467 | 17..508 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:37 Download gff for
BO13859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1159756..1160097 | 509..852 | 99 | | Plus |
arm_2L | 1158976..1159467 | 17..508 | 100 | -> | Plus |
BO13859.pep Sequence
Translation from 16 to 868
> BO13859.pep
MIEVLCLLLGRILLLLVGGYELMWRLRERLNALAVRSYDLWRSKAAREAH
ERRVLADCRSQLTKTPQHLVLVISPVDAGVDAVLLSRIFDFALDVGIKHV
SLYDRRTKGRGYVDMADLCRSTNADTGSCLKWPPVASPSKLENQPKNGQK
TNGYVNGSHSPQLQLHQISASDGHALIADVCRELYEDSKTELVQSLLKQK
REALTEQISDMLSKRLGFEAPEPELGIVFARQTCTYGLLPWHARFTEFHT
HPSGRHFDVETFASILCKYSRCEQRWGTASFLDH
BO13859.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango14-PB | 278 | CG4775-PB | 1..278 | 1..278 | 1459 | 100 | Plus |
Tango14-PA | 278 | CG4775-PA | 1..278 | 1..278 | 1459 | 100 | Plus |