Clone BO13859 Report

Search the DGRC for BO13859

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptTango14-RA
Protein status:BO13859.pep: validated full length
Sequenced Size:868

Clone Sequence Records

BO13859.3prime Sequence

866 bp (730 high quality bases) assembled on 2006-05-08

> BO13859.3prime
ATGGTCTAGAAAGCTTGCCGTGCCCCACCGCTGCTCGCACCGCGAGTACT
TGCACAGGATGCTGGCGAACGTCTCCACGTCGAAGTGGCGTCCGCTGGGA
TGCGTGTGGAACTCGGTGAAGCGCGCGTGCCAGGGAAGCAGGCCGTAGGT
GCACGTCTGCCGGGCGAACACGATGCCCAGCTCCGGCTCCGGGGCCTCGA
ACCCGAGTCGCTTGCTCAGCATGTCGCTGATCTGCTCCGTCAGCGCTTCG
CGCTTCTGCTTAAGTAGGCTCTGCACCAACTCCGTCTTACTGTCTTCGTA
CAACTCGCGGCAGACGTCGGCGATCAGGGCATGGCCGTCGGAGGCGCTGA
TTTGATGGAGCTGCAGTTGAGGGGAATGTGAACCGTTCACATAACCATTT
GTCTTTTGTCCGTTTTTGGGCTGGTTCTCCAGTTTGCTGGGACTGGCTAC
GGGTGGCCACTTTAAGCAGCTGCCCGTGTCCGCGTTGGTGGATCGACAGA
GATCGGCCATGTCCACGTATCCCCTGCCTTTCGTCCGCCTGTCGTACAGG
CTGACGTGTTTGATGCCCACGTCCAGGGCAAAGTCGAAGATCCTGCTGAG
GAGCACCGCATCCACGCCGGCATCTACGGGGGAGATAACCAGGACCAGAT
GCTGCGGCGTCTTCGTCAACTGGGAGCGGCAGTCAGCGAGCACGCGCCGC
TCGTGCGCCTCACGTGCCGCTTTGCTGCGCCAAAGGTCATATGACCGGAC
GGCCAGTGCATTCAGTCGCTCTCGGAGCCGCCACATCAGTTCGTAGCCGC
CGACCAGGAGCAGCAAGATCCTGCCCAGCAGCAGGCACAGCACCTCGATC
ATGTCGACTGATAACT

BO13859.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4775-PA 837 l(2)k00619-RA 1..834 852..19 4145 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Tango14-RB 1198 CG4775-RB 240..1075 854..19 4165 99.9 Minus
Tango14-RA 1272 CG4775-RA 314..1149 854..19 4165 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1158974..1159467 854..361 2455 99.8 Minus
2L 23513712 2L 1159753..1160097 363..19 1725 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:14:57 has no hits.

BO13859.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:59 Download gff for BO13859.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4775-PA 1..837 18..852 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:12 Download gff for BO13859.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4775-PA 1..837 18..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:25 Download gff for BO13859.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 314..1154 13..854 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:46:46 Download gff for BO13859.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 314..1154 13..854 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:46:46 Download gff for BO13859.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1159756..1160102 13..360 99   Minus
2L 1158974..1159467 361..854 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:25 Download gff for BO13859.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1158974..1159467 361..854 99 -> Minus
arm_2L 1159756..1160102 13..360 99   Minus

BO13859.5prime Sequence

840 bp (722 high quality bases) assembled on 2006-05-08

> BO13859.5prime
GAAGTTATCAGTCGACATGATCGAGGTGCTGTGCCTGCTGCTGGGCAGGA
TCCTGCTGCTCCTGGTCGGCGGCTACGAACTGATGTGGCGGCTCCGAGAG
CGACTGAATGCACTGGCCGTCCGGTCATATGACCTTTGGCGCAGCAAAGC
GGCACGTGAGGCGCACGAGCGGCGCGTGCTCGCTGACTGCCGCTCCCAGT
TGACGAAGACGCCGCAGCATCTGGTCCTGGTTATCTCCCCCGTAGATGCC
GGCGTGGATGCGGTGCTCCTCAGCAGGATCTTCGACTTTGCCCTGGACGT
GGGCATCAAACACGTCAGCCTGTACGACAGGCGGACGAAAGGCAGGGGAT
ACGTGGACATGGCCGATCTCTGTCGATCCACCAACGCGGACACGGGCAGC
TGCTTAAAGTGGCCACCCGTAGCCAGTCCCAGCAAACTGGAGAACCAGCC
CAAAAACGGACAAAAGACAAATGGTTATGTGAACGGTTCACATTCCCCTC
AACTGCAGCTCCATCAAATCAGCGCCTCCGACGGCCATGCCCTGATCGCC
GACGTCTGCCGCGAGTTGTACGAAGACAGTAAGACGGAGTTGGTGCAGAG
CCTACTTAAGCAGAAGCGCGAAGCGCTGACGGAGCAGATCAGCGACATGC
TGAGCAAGCGACTCGGGTTCGAGGCCCCGGAGCCGGAGCTGGGCATCGTG
TTCGCCCGGCAGACGTGCACCTACGGCCTGCTTCCCTGGCACGCGCGCTT
CACCGAGTTCCACACGCATCCCAGCGGACGCCACTTCGACGTGGAGACGT
TCGCCAGCATCCTGTGCAAGTACTCGCGGTGCGAGCAGCG

BO13859.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4775-PA 837 l(2)k00619-RA 1..824 17..840 4120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Tango14-RB 1198 CG4775-RB 240..1065 15..840 4130 100 Plus
Tango14-RA 1272 CG4775-RA 314..1139 15..840 4130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1158974..1159467 15..508 2470 100 Plus
2L 23513712 2L 1159753..1160087 506..840 1675 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:58:15 has no hits.

BO13859.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:00 Download gff for BO13859.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4775-PA 1..824 17..840 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:14 Download gff for BO13859.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4775-PA 1..824 17..840 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:17:12 Download gff for BO13859.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 314..1139 15..840 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:12 Download gff for BO13859.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 314..1139 15..840 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:12 Download gff for BO13859.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1158974..1159467 15..508 100 -> Plus
2L 1159756..1160087 509..840 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:17:12 Download gff for BO13859.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1158974..1159467 15..508 100 -> Plus
arm_2L 1159756..1160087 509..840 100   Plus

BO13859.complete Sequence

868 bp assembled on 2006-10-11

GenBank Submission: FJ632955

> BO13859.complete
GAAGTTATCAGTCGACATGATCGAGGTGCTGTGCCTGCTGCTGGGCAGGA
TCCTGCTGCTCCTGGTCGGCGGCTACGAACTGATGTGGCGGCTCCGAGAG
CGACTGAATGCACTGGCCGTCCGGTCATATGACCTTTGGCGCAGCAAAGC
GGCACGTGAGGCGCACGAGCGGCGCGTGCTCGCTGACTGCCGCTCCCAGT
TGACGAAGACGCCGCAGCATCTGGTCCTGGTTATCTCCCCCGTAGATGCC
GGCGTGGATGCGGTGCTCCTCAGCAGGATCTTCGACTTTGCCCTGGACGT
GGGCATCAAACACGTCAGCCTGTACGACAGGCGGACGAAAGGCAGGGGAT
ACGTGGACATGGCCGATCTCTGTCGATCCACCAACGCGGACACGGGCAGC
TGCTTAAAGTGGCCACCCGTAGCCAGTCCCAGCAAACTGGAGAACCAGCC
CAAAAACGGACAAAAGACAAATGGTTATGTGAACGGTTCACATTCCCCTC
AACTGCAGCTCCATCAAATCAGCGCCTCCGACGGCCATGCCCTGATCGCC
GACGTCTGCCGCGAGTTGTACGAAGACAGTAAGACGGAGTTGGTGCAGAG
CCTACTTAAGCAGAAGCGCGAAGCGCTGACGGAGCAGATCAGCGACATGC
TGAGCAAGCGACTCGGGTTCGAGGCCCCGGAGCCGGAGCTGGGCATCGTG
TTCGCCCGGCAGACGTGCACCTACGGCCTGCTTCCCTGGCACGCGCGCTT
CACCGAGTTCCACACGCATCCCAGCGGACGCCACTTCGACGTGGAGACGT
TCGCCAGCATCCTGTGCAAGTACTCGCGGTGCGAGCAGCGGTGGGGCACG
GCAAGCTTTCTAGACCAT

BO13859.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
Tango14-RB 837 CG4775-PB 1..834 17..850 4170 100 Plus
Tango14-RA 837 CG4775-PA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
Tango14-RB 1198 CG4775-RB 240..1075 15..850 4180 100 Plus
Tango14-RA 1272 CG4775-RA 314..1149 15..850 4180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1158974..1159467 15..508 2470 100 Plus
2L 23513712 2L 1159753..1160097 506..850 1725 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:33:14 has no hits.

BO13859.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:25 Download gff for BO13859.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 1..837 17..851 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:16 Download gff for BO13859.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 296..1136 15..856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:37 Download gff for BO13859.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 316..1149 17..852 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:26 Download gff for BO13859.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 296..1136 15..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:05 Download gff for BO13859.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 316..1149 17..852 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:05 Download gff for BO13859.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1159756..1160097 509..852 99   Plus
2L 1158976..1159467 17..508 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:37 Download gff for BO13859.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1159756..1160097 509..852 99   Plus
arm_2L 1158976..1159467 17..508 100 -> Plus

BO13859.pep Sequence

Translation from 16 to 868

> BO13859.pep
MIEVLCLLLGRILLLLVGGYELMWRLRERLNALAVRSYDLWRSKAAREAH
ERRVLADCRSQLTKTPQHLVLVISPVDAGVDAVLLSRIFDFALDVGIKHV
SLYDRRTKGRGYVDMADLCRSTNADTGSCLKWPPVASPSKLENQPKNGQK
TNGYVNGSHSPQLQLHQISASDGHALIADVCRELYEDSKTELVQSLLKQK
REALTEQISDMLSKRLGFEAPEPELGIVFARQTCTYGLLPWHARFTEFHT
HPSGRHFDVETFASILCKYSRCEQRWGTASFLDH

BO13859.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Tango14-PB 278 CG4775-PB 1..278 1..278 1459 100 Plus
Tango14-PA 278 CG4775-PA 1..278 1..278 1459 100 Plus