Clone Sequence Records
BO13862.3prime Sequence
392 bp (391 high quality bases) assembled on 2006-05-08
> BO13862.3prime
ATGGTCTAGAAAGCTTGCAACAGCTGCCTTCTCCACCAGCTTGAACCAAT
GGCCGCACTCACAACGTTTCTGGTTGCCCTTCTGCAGCCACATCCATTGC
ACGTAGGTCTGATCCTCTTCGCAGATGCAGCCCACAATGCGAGCATCGAA
GGCCGATGGAATAAGGTTGGGGTTCTCCTTGGTGCCGGCGCCCCGCTTGA
AGACCTTCATGTCGAAGGGGTTATCATTGCCGGCGGCCTTAAGCAGCAGC
TCGCGCTTCTCGATACCAGTGGCGTGCTCCAAAGGATCGTTCATCATTTT
GCAGAAGCGCACGGGCGTGTAGGCAACATTCTGGCGTGCGGCGGCACGGA
GCGCCATGCGTCCACAGATCGATGCCATGTCGACTGATAACT
BO13862.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11015-PA | 363 | CG11015-RA | 1..360 | 378..19 | 1800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoVb-RB | 570 | CG11015-RB | 104..463 | 378..19 | 1800 | 100 | Minus |
CoVb-RA | 729 | CG11015-RA | 104..463 | 378..19 | 1800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6558418..6558592 | 296..122 | 875 | 100 | Minus |
2L | 23513712 | 2L | 6558939..6559042 | 122..19 | 520 | 100 | Minus |
2L | 23513712 | 2L | 6557903..6557984 | 378..297 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:15:31 has no hits.
BO13862.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:03 Download gff for
BO13862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11015-PA | 1..363 | 15..378 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:19 Download gff for
BO13862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11015-PA | 1..363 | 15..378 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:20:13 Download gff for
BO13862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoVb-RA | 104..474 | 7..378 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:46 Download gff for
BO13862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoVb-RA | 104..474 | 7..378 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:46 Download gff for
BO13862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6558418..6558591 | 123..296 | 100 | -> | Minus |
2L | 6558939..6559053 | 7..122 | 95 | | Minus |
2L | 6557903..6557984 | 297..378 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:20:13 Download gff for
BO13862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6558939..6559053 | 7..122 | 95 | | Minus |
arm_2L | 6557903..6557984 | 297..378 | 100 | -> | Minus |
arm_2L | 6558418..6558591 | 123..296 | 100 | -> | Minus |
BO13862.5prime Sequence
392 bp (391 high quality bases) assembled on 2006-05-08
> BO13862.5prime
GAAGTTATCAGTCGACATGGCATCGATCTGTGGACGCATGGCGCTCCGTG
CCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAATG
ATGAACGATCCTTTGGAGCACGCCACTGGTATCGAGAAGCGCGAGCTGCT
GCTTAAGGCCGCCGGCAATGATAACCCCTTCGACATGAAGGTCTTCAAGC
GGGGCGCCGGCACCAAGGAGAACCCCAACCTTATTCCATCGGCCTTCGAT
GCTCGCATTGTGGGCTGCATCTGCGAAGAGGATCAGACCTACGTGCAATG
GATGTGGCTGCAGAAGGGCAACCAGAAACGTTGTGAGTGCGGCCATTGGT
TCAAGCTGGTGGAGAAGGCAGCTGTTGCAAGCTTTCTAGACC
BO13862.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11015-PA | 363 | CG11015-RA | 1..360 | 17..376 | 1800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoVb-RB | 570 | CG11015-RB | 104..463 | 17..376 | 1800 | 100 | Plus |
CoVb-RA | 729 | CG11015-RA | 104..463 | 17..376 | 1800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6558418..6558592 | 99..273 | 875 | 100 | Plus |
2L | 23513712 | 2L | 6558939..6559042 | 273..376 | 520 | 100 | Plus |
2L | 23513712 | 2L | 6557903..6557984 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:59:12 has no hits.
BO13862.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:04 Download gff for
BO13862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11015-PA | 1..363 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:20 Download gff for
BO13862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11015-PA | 1..363 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:17:21 Download gff for
BO13862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoVb-RA | 104..474 | 17..388 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:24 Download gff for
BO13862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoVb-RA | 104..474 | 17..388 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:24 Download gff for
BO13862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6557903..6557984 | 17..98 | 100 | -> | Plus |
2L | 6558418..6558591 | 99..272 | 100 | -> | Plus |
2L | 6558939..6559053 | 273..388 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:17:21 Download gff for
BO13862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6557903..6557984 | 17..98 | 100 | -> | Plus |
arm_2L | 6558418..6558591 | 99..272 | 100 | -> | Plus |
arm_2L | 6558939..6559053 | 273..388 | 95 | | Plus |
BO13862.complete Sequence
394 bp assembled on 2006-10-11
GenBank Submission: FJ632956
> BO13862.complete
GAAGTTATCAGTCGACATGGCATCGATCTGTGGACGCATGGCGCTCCGTG
CCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAATG
ATGAACGATCCTTTGGAGCACGCCACTGGTATCGAGAAGCGCGAGCTGCT
GCTTAAGGCCGCCGGCAATGATAACCCCTTCGACATGAAGGTCTTCAAGC
GGGGCGCCGGCACCAAGGAGAACCCCAACCTTATTCCATCGGCCTTCGAT
GCTCGCATTGTGGGCTGCATCTGCGAAGAGGATCAGACCTACGTGCAATG
GATGTGGCTGCAGAAGGGCAACCAGAAACGTTGTGAGTGCGGCCATTGGT
TCAAGCTGGTGGAGAAGGCAGCTGTTGCAAGCTTTCTAGACCAT
BO13862.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoVb-RB | 363 | CG11015-PB | 1..360 | 17..376 | 1800 | 100 | Plus |
CoVb-RA | 363 | CG11015-PA | 1..360 | 17..376 | 1800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoVb-RB | 570 | CG11015-RB | 104..463 | 17..376 | 1800 | 100 | Plus |
CoVb-RA | 729 | CG11015-RA | 104..463 | 17..376 | 1800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:14:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6558418..6558592 | 99..273 | 875 | 100 | Plus |
2L | 23513712 | 2L | 6558939..6559042 | 273..376 | 520 | 100 | Plus |
2L | 23513712 | 2L | 6557903..6557984 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:14:33 has no hits.
BO13862.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:11 Download gff for
BO13862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11015-RA | 1..363 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:33 Download gff for
BO13862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11015-RA | 104..474 | 17..388 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:10 Download gff for
BO13862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoVb-RA | 104..463 | 17..378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:11 Download gff for
BO13862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11015-RA | 104..474 | 17..388 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:59 Download gff for
BO13862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoVb-RA | 104..463 | 17..378 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:59 Download gff for
BO13862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6557903..6557984 | 17..98 | 100 | -> | Plus |
2L | 6558418..6558591 | 99..272 | 100 | -> | Plus |
2L | 6558939..6559042 | 273..378 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:10 Download gff for
BO13862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6558939..6559042 | 273..378 | 98 | | Plus |
arm_2L | 6557903..6557984 | 17..98 | 100 | -> | Plus |
arm_2L | 6558418..6558591 | 99..272 | 100 | -> | Plus |
BO13862.pep Sequence
Translation from 16 to 394
> BO13862.pep
MASICGRMALRAAARQNVAYTPVRFCKMMNDPLEHATGIEKRELLLKAAG
NDNPFDMKVFKRGAGTKENPNLIPSAFDARIVGCICEEDQTYVQWMWLQK
GNQKRCECGHWFKLVEKAAVASFLDH
BO13862.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoVb-PB | 120 | CG11015-PB | 1..120 | 1..120 | 651 | 100 | Plus |
CoVb-PA | 120 | CG11015-PA | 1..120 | 1..120 | 651 | 100 | Plus |
CG11043-PA | 154 | CG11043-PA | 29..148 | 1..114 | 223 | 41.8 | Plus |