Clone BO13862 Report

Search the DGRC for BO13862

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG11015-RA
Protein status:BO13862.pep: validated full length
Sequenced Size:394

Clone Sequence Records

BO13862.3prime Sequence

392 bp (391 high quality bases) assembled on 2006-05-08

> BO13862.3prime
ATGGTCTAGAAAGCTTGCAACAGCTGCCTTCTCCACCAGCTTGAACCAAT
GGCCGCACTCACAACGTTTCTGGTTGCCCTTCTGCAGCCACATCCATTGC
ACGTAGGTCTGATCCTCTTCGCAGATGCAGCCCACAATGCGAGCATCGAA
GGCCGATGGAATAAGGTTGGGGTTCTCCTTGGTGCCGGCGCCCCGCTTGA
AGACCTTCATGTCGAAGGGGTTATCATTGCCGGCGGCCTTAAGCAGCAGC
TCGCGCTTCTCGATACCAGTGGCGTGCTCCAAAGGATCGTTCATCATTTT
GCAGAAGCGCACGGGCGTGTAGGCAACATTCTGGCGTGCGGCGGCACGGA
GCGCCATGCGTCCACAGATCGATGCCATGTCGACTGATAACT

BO13862.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11015-PA 363 CG11015-RA 1..360 378..19 1800 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
CoVb-RB 570 CG11015-RB 104..463 378..19 1800 100 Minus
CoVb-RA 729 CG11015-RA 104..463 378..19 1800 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6558418..6558592 296..122 875 100 Minus
2L 23513712 2L 6558939..6559042 122..19 520 100 Minus
2L 23513712 2L 6557903..6557984 378..297 410 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:15:31 has no hits.

BO13862.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:03 Download gff for BO13862.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11015-PA 1..363 15..378 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:19 Download gff for BO13862.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11015-PA 1..363 15..378 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:20:13 Download gff for BO13862.3prime
Subject Subject Range Query Range Percent Splice Strand
CoVb-RA 104..474 7..378 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:46 Download gff for BO13862.3prime
Subject Subject Range Query Range Percent Splice Strand
CoVb-RA 104..474 7..378 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:46 Download gff for BO13862.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6558418..6558591 123..296 100 -> Minus
2L 6558939..6559053 7..122 95   Minus
2L 6557903..6557984 297..378 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:20:13 Download gff for BO13862.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6558939..6559053 7..122 95   Minus
arm_2L 6557903..6557984 297..378 100 -> Minus
arm_2L 6558418..6558591 123..296 100 -> Minus

BO13862.5prime Sequence

392 bp (391 high quality bases) assembled on 2006-05-08

> BO13862.5prime
GAAGTTATCAGTCGACATGGCATCGATCTGTGGACGCATGGCGCTCCGTG
CCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAATG
ATGAACGATCCTTTGGAGCACGCCACTGGTATCGAGAAGCGCGAGCTGCT
GCTTAAGGCCGCCGGCAATGATAACCCCTTCGACATGAAGGTCTTCAAGC
GGGGCGCCGGCACCAAGGAGAACCCCAACCTTATTCCATCGGCCTTCGAT
GCTCGCATTGTGGGCTGCATCTGCGAAGAGGATCAGACCTACGTGCAATG
GATGTGGCTGCAGAAGGGCAACCAGAAACGTTGTGAGTGCGGCCATTGGT
TCAAGCTGGTGGAGAAGGCAGCTGTTGCAAGCTTTCTAGACC

BO13862.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11015-PA 363 CG11015-RA 1..360 17..376 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
CoVb-RB 570 CG11015-RB 104..463 17..376 1800 100 Plus
CoVb-RA 729 CG11015-RA 104..463 17..376 1800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6558418..6558592 99..273 875 100 Plus
2L 23513712 2L 6558939..6559042 273..376 520 100 Plus
2L 23513712 2L 6557903..6557984 17..98 410 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:59:12 has no hits.

BO13862.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:04 Download gff for BO13862.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11015-PA 1..363 17..380 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:20 Download gff for BO13862.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11015-PA 1..363 17..380 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:17:21 Download gff for BO13862.5prime
Subject Subject Range Query Range Percent Splice Strand
CoVb-RA 104..474 17..388 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:24 Download gff for BO13862.5prime
Subject Subject Range Query Range Percent Splice Strand
CoVb-RA 104..474 17..388 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:24 Download gff for BO13862.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6557903..6557984 17..98 100 -> Plus
2L 6558418..6558591 99..272 100 -> Plus
2L 6558939..6559053 273..388 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:17:21 Download gff for BO13862.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6557903..6557984 17..98 100 -> Plus
arm_2L 6558418..6558591 99..272 100 -> Plus
arm_2L 6558939..6559053 273..388 95   Plus

BO13862.complete Sequence

394 bp assembled on 2006-10-11

GenBank Submission: FJ632956

> BO13862.complete
GAAGTTATCAGTCGACATGGCATCGATCTGTGGACGCATGGCGCTCCGTG
CCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAATG
ATGAACGATCCTTTGGAGCACGCCACTGGTATCGAGAAGCGCGAGCTGCT
GCTTAAGGCCGCCGGCAATGATAACCCCTTCGACATGAAGGTCTTCAAGC
GGGGCGCCGGCACCAAGGAGAACCCCAACCTTATTCCATCGGCCTTCGAT
GCTCGCATTGTGGGCTGCATCTGCGAAGAGGATCAGACCTACGTGCAATG
GATGTGGCTGCAGAAGGGCAACCAGAAACGTTGTGAGTGCGGCCATTGGT
TCAAGCTGGTGGAGAAGGCAGCTGTTGCAAGCTTTCTAGACCAT

BO13862.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
CoVb-RB 363 CG11015-PB 1..360 17..376 1800 100 Plus
CoVb-RA 363 CG11015-PA 1..360 17..376 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
CoVb-RB 570 CG11015-RB 104..463 17..376 1800 100 Plus
CoVb-RA 729 CG11015-RA 104..463 17..376 1800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6558418..6558592 99..273 875 100 Plus
2L 23513712 2L 6558939..6559042 273..376 520 100 Plus
2L 23513712 2L 6557903..6557984 17..98 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:14:33 has no hits.

BO13862.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:11 Download gff for BO13862.complete
Subject Subject Range Query Range Percent Splice Strand
CG11015-RA 1..363 17..380 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:33 Download gff for BO13862.complete
Subject Subject Range Query Range Percent Splice Strand
CG11015-RA 104..474 17..388 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:10 Download gff for BO13862.complete
Subject Subject Range Query Range Percent Splice Strand
CoVb-RA 104..463 17..378 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:11 Download gff for BO13862.complete
Subject Subject Range Query Range Percent Splice Strand
CG11015-RA 104..474 17..388 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:59 Download gff for BO13862.complete
Subject Subject Range Query Range Percent Splice Strand
CoVb-RA 104..463 17..378 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:59 Download gff for BO13862.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6557903..6557984 17..98 100 -> Plus
2L 6558418..6558591 99..272 100 -> Plus
2L 6558939..6559042 273..378 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:10 Download gff for BO13862.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6558939..6559042 273..378 98   Plus
arm_2L 6557903..6557984 17..98 100 -> Plus
arm_2L 6558418..6558591 99..272 100 -> Plus

BO13862.pep Sequence

Translation from 16 to 394

> BO13862.pep
MASICGRMALRAAARQNVAYTPVRFCKMMNDPLEHATGIEKRELLLKAAG
NDNPFDMKVFKRGAGTKENPNLIPSAFDARIVGCICEEDQTYVQWMWLQK
GNQKRCECGHWFKLVEKAAVASFLDH

BO13862.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
CoVb-PB 120 CG11015-PB 1..120 1..120 651 100 Plus
CoVb-PA 120 CG11015-PA 1..120 1..120 651 100 Plus
CG11043-PA 154 CG11043-PA 29..148 1..114 223 41.8 Plus