Clone BO13863 Report

Search the DGRC for BO13863

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG5028-RA
Protein status:BO13863.pep: validated full length
Sequenced Size:1240

Clone Sequence Records

BO13863.3prime Sequence

846 bp (786 high quality bases) assembled on 2006-05-08

> BO13863.3prime
ATGGTCTAGAAAGCTTGCAATTTGGCTAAAATAGTTTCCATGTGGCCAAT
TCACGCGCTTGGCACTCAAGATCTTGAGTATATTCTCAACCACATCGGTA
CTGGAGTTGGTGCCGCCAATATCTGGCGTGCGAATGGCATCGTTGACAAT
GGTCTGGTAGACGGCCTCCTGAATGACATTGGCGTGCTCCTTGTGGCCCA
GATGGTTCAACATATCGATACTGGCACTGATCATGGCCACAGGGTTGGCG
ATATTCTTGCCGGCAATGGCGGTTCCTGTGTTACGGGTGCCAGGCTCAAA
GATGGCGTAATGGTCACCGTAGTTCCTGCCGGATATGAGGCCAGCTCCGC
CCATCAAACCGCAAAGAACATTGGACACGATGGTGCCGTACAGATTGGTC
ATGTTCATCACGTCGAACTGGTGAGGATTCGACACGGACTGCATGCAGGT
GTTGTCGATAATCATGTTGTTGTGCTCCAGTTCGGGATAGTCCTTGTGCA
CACGGTTGGCAACCTCCAGGAAGAGACCATCGGACAGCTTCATGATGTTG
GCCTTGTGAATGGTGGTAACCTTCTTGCGATTGTTTTGGCGGGCGAACTC
AAAGGCGTAGCGGGCCACACGCTCGGCATTCTCGACGGTCACCACTTTCA
TGCTCTCCACAATTCCGGGCACAGACTCATGTTCCAACATGGCGTACTCG
CCATCGGTGTTTTGGCGGATGAGCACCACGTCAATGTCGTGATGGCGGGC
CGGAATGCCCGGATACGACTTGCAGTGCACCACATTGACGTACAGATCCA
GCTCGTTACGGATGGCCACGTTGCGGGAGACTTCGGTCAAGGATTG

BO13863.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5028-PA 1209 CG5028-RA 379..1206 846..19 4115 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5028-RB 1934 CG5028-RB 501..1328 846..19 4125 99.9 Minus
CG5028-RA 1407 CG5028-RA 501..1328 846..19 4125 99.9 Minus
CG5028-RD 1742 CG5028-RD 501..1301 846..46 3990 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25681509..25682045 846..310 2685 100 Minus
3R 32079331 3R 25682105..25682291 309..123 920 99.5 Minus
3R 32079331 3R 25682353..25682432 125..46 400 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:20:37 has no hits.

BO13863.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:05 Download gff for BO13863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5028-PA 379..1209 18..846 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:21 Download gff for BO13863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5028-PA 379..1209 18..846 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:38:27 Download gff for BO13863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5028-RA 501..1333 13..846 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:38:07 Download gff for BO13863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5028-RA 501..1333 13..846 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:38:07 Download gff for BO13863.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25681509..25682045 310..846 100 -> Minus
3R 25682105..25682291 123..309 99 -> Minus
3R 25682356..25682431 47..122 100 -> Minus
3R 25683058..25683090 13..46 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:38:27 Download gff for BO13863.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21507231..21507767 310..846 100 -> Minus
arm_3R 21507827..21508013 123..309 99 -> Minus
arm_3R 21508078..21508153 47..122 100 -> Minus
arm_3R 21508780..21508812 13..46 91   Minus

BO13863.5prime Sequence

769 bp (743 high quality bases) assembled on 2006-05-08

> BO13863.5prime
GAAGTTATCAGTCGACATGGCCCTTCGCTTGACCCAGAGATTGCTGCAGA
CGCAGACGCCGTTCCTCACTCGCGGCTATCCCTTGCTGGTGACCAAGGAG
AAGACCGAGGATGTGGCCCACACCAAATCGGCGCTGCAGAAGAAAGTCAC
GGGCACCGATATTCCCTCGGCACAGTACGGAGGTCGTCATGCCGTCACCA
TGCTGCCGGGCGGCGGCATTGGTCCTGAACTGATGGGCTATGTGCGCGAG
ATCTTCCGGTATTGCGGTGCACCCATCGATTTCGAGGTGATCGACATCGA
TCCCTCCACCGAGGGCAACGATGATCTGGACTATGCCATCACATCGATTA
AGAGGAACGGAGTGGCACTCAAGGGCAACATCGAGACCAAGTCCCAATCC
TTGACCGAAGTCTCCCGCAACGTGGCCATCCGTAACGAGCTGGATCTGTA
CGTCAATGTGGTGCACTGCAAGTCGTATCCGGGCATTCCGGCCCGCCATC
ACGACATTGACGTGGTGCTCATCCGCCAAAACACCGATGGCGAGTACGCC
ATGTTGGAACATGAGTCTGTGCCCGGAATTGTGGAGAGCATGAAAGTGGT
GACCGTCGAGAATGCCGAGCGTGTGGCCCGCTACGCCTTTGAGTTCGCCC
GCCAAAACAATCGCAAGAAGGTTACCACCATTCACAAGGCCAACATCATG
AAGCTGTCCGATGGTCTCTTCCTGGAGGTTGCCAACCGTGTGCACAAGGA
CTATCCCGAACTGGAGCAC

BO13863.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5028-PA 1209 CG5028-RA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5028-RD 1742 CG5028-RD 122..875 16..769 3770 100 Plus
CG5028-RC 1608 CG5028-RC 122..875 16..769 3770 100 Plus
CG5028-RB 1934 CG5028-RB 122..875 16..769 3770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25681265..25681883 151..769 3095 100 Plus
3R 32079331 3R 25681121..25681199 74..152 395 100 Plus
3R 32079331 3R 25680966..25681024 16..74 295 100 Plus
Blast to na_te.dros performed on 2015-02-02 09:10:56 has no hits.

BO13863.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:06 Download gff for BO13863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5028-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:23 Download gff for BO13863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5028-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:53:24 Download gff for BO13863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5028-RB 122..875 16..769 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:12:49 Download gff for BO13863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5028-RB 122..875 16..769 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:12:49 Download gff for BO13863.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25681121..25681198 74..151 100 -> Plus
3R 25680966..25681023 16..73 100 -> Plus
3R 25681266..25681883 152..769 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:53:24 Download gff for BO13863.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21506688..21506745 16..73 100 -> Plus
arm_3R 21506843..21506920 74..151 100 -> Plus
arm_3R 21506988..21507605 152..769 100   Plus

BO13863.complete Sequence

1240 bp assembled on 2006-10-11

GenBank Submission: FJ632957

> BO13863.complete
GAAGTTATCAGTCGACATGGCCCTTCGCTTGACCCAGAGATTGCTGCAGA
CGCAGACGCCGTTCCTCACTCGCGGCTATCCCTTGCTGGTGACCAAGGAG
AAGACCGAGGATGTGGCCCACACCAAATCGGCGCTGCAGAAGAAAGTCAC
GGGCACCGATATTCCCTCGGCACAGTACGGAGGTCGTCATGCCGTCACCA
TGCTGCCGGGCGGCGGCATTGGTCCTGAACTGATGGGCTATGTGCGCGAG
ATCTTCCGGTATTGCGGTGCACCCATCGATTTCGAGGTGATCGACATCGA
TCCCTCCACCGAGGGCAACGATGATCTGGACTATGCCATCACATCGATTA
AGAGGAACGGAGTGGCACTCAAGGGCAACATCGAGACCAAGTCCCAATCC
TTGACCGAAGTCTCCCGCAACGTGGCCATCCGTAACGAGCTGGATCTGTA
CGTCAATGTGGTGCACTGCAAGTCGTATCCGGGCATTCCGGCCCGCCATC
ACGACATTGACGTGGTGCTCATCCGCCAAAACACCGATGGCGAGTACGCC
ATGTTGGAACATGAGTCTGTGCCCGGAATTGTGGAGAGCATGAAAGTGGT
GACCGTCGAGAATGCCGAGCGTGTGGCCCGCTACGCCTTTGAGTTCGCCC
GCCAAAACAATCGCAAGAAGGTTACCACCATTCACAAGGCCAACATCATG
AAGCTGTCCGATGGTCTCTTCCTGGAGGTTGCCAACCGTGTGCACAAGGA
CTATCCCGAACTGGAGCACAACAACATGATTATCGACAACACCTGCATGC
AGTCCGTGTCGAATCCTCACCAGTTCGACGTGATGAACATGACCAATCTG
TACGGCACCATCGTGTCCAATGTTCTTTGCGGTTTGATGGGCGGAGCTGG
CCTCATATCCGGCAGGAACTACGGTGACCATTACGCCATCTTTGAGCCTG
GCACCCGTAACACAGGAACCGCCATTGCCGGCAAGAATATCGCCAACCCT
GTGGCCATGATCAGTGCCAGTATCGATATGTTGAACCATCTGGGCCACAA
GGAGCACGCCAATGTCATTCAGGAGGCCGTCTACCAGACCATTGTCAACG
ATGCCATTCGCACGCCAGATATTGGCGGCACCAACTCCAGTACCGATGTG
GTTGAGAATATACTCAAGATCTTGAGTGCCAAGCGCGTGAATTGGCCACA
TGGAAACTATTTTAGCCAAATTGCAAGCTTTCTAGACCAT

BO13863.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5028-RB 1209 CG5028-PB 1..1206 17..1222 6015 99.9 Plus
CG5028-RA 1209 CG5028-PA 1..1206 17..1222 6015 99.9 Plus
CG5028-RD 1182 CG5028-PD 1..1179 17..1195 5880 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5028-RB 1934 CG5028-RB 122..1328 16..1222 6020 99.9 Plus
CG5028-RA 1407 CG5028-RA 122..1328 16..1222 6020 99.9 Plus
CG5028-RD 1742 CG5028-RD 122..1301 16..1195 5885 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25681265..25682045 151..931 3905 100 Plus
3R 32079331 3R 25682105..25682291 932..1118 920 99.5 Plus
3R 32079331 3R 25682353..25682432 1116..1195 400 100 Plus
3R 32079331 3R 25681121..25681199 74..152 395 100 Plus
3R 32079331 3R 25680966..25681024 16..74 295 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:27:20 has no hits.

BO13863.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:58 Download gff for BO13863.complete
Subject Subject Range Query Range Percent Splice Strand
CG5028-RB 1..1209 17..1223 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:01 Download gff for BO13863.complete
Subject Subject Range Query Range Percent Splice Strand
CG5028-RB 149..1360 16..1228 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:53 Download gff for BO13863.complete
Subject Subject Range Query Range Percent Splice Strand
CG5028-RA 123..1328 17..1224 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:58 Download gff for BO13863.complete
Subject Subject Range Query Range Percent Splice Strand
CG5028-RB 149..1360 16..1228 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:44 Download gff for BO13863.complete
Subject Subject Range Query Range Percent Splice Strand
CG5028-RA 123..1328 17..1224 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:44 Download gff for BO13863.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25680967..25681023 17..73 100 -> Plus
3R 25681121..25681198 74..151 100 -> Plus
3R 25681266..25682045 152..931 100 -> Plus
3R 25682105..25682291 932..1118 99 -> Plus
3R 25682356..25682431 1119..1194 100 -> Plus
3R 25683058..25683085 1195..1224 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:53 Download gff for BO13863.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21507827..21508013 932..1118 99 -> Plus
arm_3R 21508078..21508153 1119..1194 100 -> Plus
arm_3R 21508780..21508807 1195..1224 93   Plus
arm_3R 21506689..21506745 17..73 100 -> Plus
arm_3R 21506843..21506920 74..151 100 -> Plus
arm_3R 21506988..21507767 152..931 100 -> Plus

BO13863.pep Sequence

Translation from 16 to 1240

> BO13863.pep
MALRLTQRLLQTQTPFLTRGYPLLVTKEKTEDVAHTKSALQKKVTGTDIP
SAQYGGRHAVTMLPGGGIGPELMGYVREIFRYCGAPIDFEVIDIDPSTEG
NDDLDYAITSIKRNGVALKGNIETKSQSLTEVSRNVAIRNELDLYVNVVH
CKSYPGIPARHHDIDVVLIRQNTDGEYAMLEHESVPGIVESMKVVTVENA
ERVARYAFEFARQNNRKKVTTIHKANIMKLSDGLFLEVANRVHKDYPELE
HNNMIIDNTCMQSVSNPHQFDVMNMTNLYGTIVSNVLCGLMGGAGLISGR
NYGDHYAIFEPGTRNTGTAIAGKNIANPVAMISASIDMLNHLGHKEHANV
IQEAVYQTIVNDAIRTPDIGGTNSSTDVVENILKILSAKRVNWPHGNYFS
QIASFLDH

BO13863.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5028-PB 402 CG5028-PB 1..402 1..402 2086 100 Plus
CG5028-PA 402 CG5028-PA 1..402 1..402 2086 100 Plus
CG5028-PD 393 CG5028-PD 1..393 1..393 2033 100 Plus
CG5028-PC 392 CG5028-PC 1..392 1..392 2022 100 Plus
CG6439-PB 370 CG6439-PB 22..370 35..387 791 43.7 Plus