Clone Sequence Records
BO13863.3prime Sequence
846 bp (786 high quality bases) assembled on 2006-05-08
> BO13863.3prime
ATGGTCTAGAAAGCTTGCAATTTGGCTAAAATAGTTTCCATGTGGCCAAT
TCACGCGCTTGGCACTCAAGATCTTGAGTATATTCTCAACCACATCGGTA
CTGGAGTTGGTGCCGCCAATATCTGGCGTGCGAATGGCATCGTTGACAAT
GGTCTGGTAGACGGCCTCCTGAATGACATTGGCGTGCTCCTTGTGGCCCA
GATGGTTCAACATATCGATACTGGCACTGATCATGGCCACAGGGTTGGCG
ATATTCTTGCCGGCAATGGCGGTTCCTGTGTTACGGGTGCCAGGCTCAAA
GATGGCGTAATGGTCACCGTAGTTCCTGCCGGATATGAGGCCAGCTCCGC
CCATCAAACCGCAAAGAACATTGGACACGATGGTGCCGTACAGATTGGTC
ATGTTCATCACGTCGAACTGGTGAGGATTCGACACGGACTGCATGCAGGT
GTTGTCGATAATCATGTTGTTGTGCTCCAGTTCGGGATAGTCCTTGTGCA
CACGGTTGGCAACCTCCAGGAAGAGACCATCGGACAGCTTCATGATGTTG
GCCTTGTGAATGGTGGTAACCTTCTTGCGATTGTTTTGGCGGGCGAACTC
AAAGGCGTAGCGGGCCACACGCTCGGCATTCTCGACGGTCACCACTTTCA
TGCTCTCCACAATTCCGGGCACAGACTCATGTTCCAACATGGCGTACTCG
CCATCGGTGTTTTGGCGGATGAGCACCACGTCAATGTCGTGATGGCGGGC
CGGAATGCCCGGATACGACTTGCAGTGCACCACATTGACGTACAGATCCA
GCTCGTTACGGATGGCCACGTTGCGGGAGACTTCGGTCAAGGATTG
BO13863.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5028-PA | 1209 | CG5028-RA | 379..1206 | 846..19 | 4115 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5028-RB | 1934 | CG5028-RB | 501..1328 | 846..19 | 4125 | 99.9 | Minus |
CG5028-RA | 1407 | CG5028-RA | 501..1328 | 846..19 | 4125 | 99.9 | Minus |
CG5028-RD | 1742 | CG5028-RD | 501..1301 | 846..46 | 3990 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:20:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25681509..25682045 | 846..310 | 2685 | 100 | Minus |
3R | 32079331 | 3R | 25682105..25682291 | 309..123 | 920 | 99.5 | Minus |
3R | 32079331 | 3R | 25682353..25682432 | 125..46 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:20:37 has no hits.
BO13863.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:05 Download gff for
BO13863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-PA | 379..1209 | 18..846 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:21 Download gff for
BO13863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-PA | 379..1209 | 18..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:38:27 Download gff for
BO13863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-RA | 501..1333 | 13..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:38:07 Download gff for
BO13863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-RA | 501..1333 | 13..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:38:07 Download gff for
BO13863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25681509..25682045 | 310..846 | 100 | -> | Minus |
3R | 25682105..25682291 | 123..309 | 99 | -> | Minus |
3R | 25682356..25682431 | 47..122 | 100 | -> | Minus |
3R | 25683058..25683090 | 13..46 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:38:27 Download gff for
BO13863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21507231..21507767 | 310..846 | 100 | -> | Minus |
arm_3R | 21507827..21508013 | 123..309 | 99 | -> | Minus |
arm_3R | 21508078..21508153 | 47..122 | 100 | -> | Minus |
arm_3R | 21508780..21508812 | 13..46 | 91 | | Minus |
BO13863.5prime Sequence
769 bp (743 high quality bases) assembled on 2006-05-08
> BO13863.5prime
GAAGTTATCAGTCGACATGGCCCTTCGCTTGACCCAGAGATTGCTGCAGA
CGCAGACGCCGTTCCTCACTCGCGGCTATCCCTTGCTGGTGACCAAGGAG
AAGACCGAGGATGTGGCCCACACCAAATCGGCGCTGCAGAAGAAAGTCAC
GGGCACCGATATTCCCTCGGCACAGTACGGAGGTCGTCATGCCGTCACCA
TGCTGCCGGGCGGCGGCATTGGTCCTGAACTGATGGGCTATGTGCGCGAG
ATCTTCCGGTATTGCGGTGCACCCATCGATTTCGAGGTGATCGACATCGA
TCCCTCCACCGAGGGCAACGATGATCTGGACTATGCCATCACATCGATTA
AGAGGAACGGAGTGGCACTCAAGGGCAACATCGAGACCAAGTCCCAATCC
TTGACCGAAGTCTCCCGCAACGTGGCCATCCGTAACGAGCTGGATCTGTA
CGTCAATGTGGTGCACTGCAAGTCGTATCCGGGCATTCCGGCCCGCCATC
ACGACATTGACGTGGTGCTCATCCGCCAAAACACCGATGGCGAGTACGCC
ATGTTGGAACATGAGTCTGTGCCCGGAATTGTGGAGAGCATGAAAGTGGT
GACCGTCGAGAATGCCGAGCGTGTGGCCCGCTACGCCTTTGAGTTCGCCC
GCCAAAACAATCGCAAGAAGGTTACCACCATTCACAAGGCCAACATCATG
AAGCTGTCCGATGGTCTCTTCCTGGAGGTTGCCAACCGTGTGCACAAGGA
CTATCCCGAACTGGAGCAC
BO13863.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5028-PA | 1209 | CG5028-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:11:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5028-RD | 1742 | CG5028-RD | 122..875 | 16..769 | 3770 | 100 | Plus |
CG5028-RC | 1608 | CG5028-RC | 122..875 | 16..769 | 3770 | 100 | Plus |
CG5028-RB | 1934 | CG5028-RB | 122..875 | 16..769 | 3770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25681265..25681883 | 151..769 | 3095 | 100 | Plus |
3R | 32079331 | 3R | 25681121..25681199 | 74..152 | 395 | 100 | Plus |
3R | 32079331 | 3R | 25680966..25681024 | 16..74 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:10:56 has no hits.
BO13863.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:06 Download gff for
BO13863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:23 Download gff for
BO13863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:53:24 Download gff for
BO13863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-RB | 122..875 | 16..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:12:49 Download gff for
BO13863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-RB | 122..875 | 16..769 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:12:49 Download gff for
BO13863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25681121..25681198 | 74..151 | 100 | -> | Plus |
3R | 25680966..25681023 | 16..73 | 100 | -> | Plus |
3R | 25681266..25681883 | 152..769 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:53:24 Download gff for
BO13863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21506688..21506745 | 16..73 | 100 | -> | Plus |
arm_3R | 21506843..21506920 | 74..151 | 100 | -> | Plus |
arm_3R | 21506988..21507605 | 152..769 | 100 | | Plus |
BO13863.complete Sequence
1240 bp assembled on 2006-10-11
GenBank Submission: FJ632957
> BO13863.complete
GAAGTTATCAGTCGACATGGCCCTTCGCTTGACCCAGAGATTGCTGCAGA
CGCAGACGCCGTTCCTCACTCGCGGCTATCCCTTGCTGGTGACCAAGGAG
AAGACCGAGGATGTGGCCCACACCAAATCGGCGCTGCAGAAGAAAGTCAC
GGGCACCGATATTCCCTCGGCACAGTACGGAGGTCGTCATGCCGTCACCA
TGCTGCCGGGCGGCGGCATTGGTCCTGAACTGATGGGCTATGTGCGCGAG
ATCTTCCGGTATTGCGGTGCACCCATCGATTTCGAGGTGATCGACATCGA
TCCCTCCACCGAGGGCAACGATGATCTGGACTATGCCATCACATCGATTA
AGAGGAACGGAGTGGCACTCAAGGGCAACATCGAGACCAAGTCCCAATCC
TTGACCGAAGTCTCCCGCAACGTGGCCATCCGTAACGAGCTGGATCTGTA
CGTCAATGTGGTGCACTGCAAGTCGTATCCGGGCATTCCGGCCCGCCATC
ACGACATTGACGTGGTGCTCATCCGCCAAAACACCGATGGCGAGTACGCC
ATGTTGGAACATGAGTCTGTGCCCGGAATTGTGGAGAGCATGAAAGTGGT
GACCGTCGAGAATGCCGAGCGTGTGGCCCGCTACGCCTTTGAGTTCGCCC
GCCAAAACAATCGCAAGAAGGTTACCACCATTCACAAGGCCAACATCATG
AAGCTGTCCGATGGTCTCTTCCTGGAGGTTGCCAACCGTGTGCACAAGGA
CTATCCCGAACTGGAGCACAACAACATGATTATCGACAACACCTGCATGC
AGTCCGTGTCGAATCCTCACCAGTTCGACGTGATGAACATGACCAATCTG
TACGGCACCATCGTGTCCAATGTTCTTTGCGGTTTGATGGGCGGAGCTGG
CCTCATATCCGGCAGGAACTACGGTGACCATTACGCCATCTTTGAGCCTG
GCACCCGTAACACAGGAACCGCCATTGCCGGCAAGAATATCGCCAACCCT
GTGGCCATGATCAGTGCCAGTATCGATATGTTGAACCATCTGGGCCACAA
GGAGCACGCCAATGTCATTCAGGAGGCCGTCTACCAGACCATTGTCAACG
ATGCCATTCGCACGCCAGATATTGGCGGCACCAACTCCAGTACCGATGTG
GTTGAGAATATACTCAAGATCTTGAGTGCCAAGCGCGTGAATTGGCCACA
TGGAAACTATTTTAGCCAAATTGCAAGCTTTCTAGACCAT
BO13863.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5028-RB | 1209 | CG5028-PB | 1..1206 | 17..1222 | 6015 | 99.9 | Plus |
CG5028-RA | 1209 | CG5028-PA | 1..1206 | 17..1222 | 6015 | 99.9 | Plus |
CG5028-RD | 1182 | CG5028-PD | 1..1179 | 17..1195 | 5880 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5028-RB | 1934 | CG5028-RB | 122..1328 | 16..1222 | 6020 | 99.9 | Plus |
CG5028-RA | 1407 | CG5028-RA | 122..1328 | 16..1222 | 6020 | 99.9 | Plus |
CG5028-RD | 1742 | CG5028-RD | 122..1301 | 16..1195 | 5885 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:27:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25681265..25682045 | 151..931 | 3905 | 100 | Plus |
3R | 32079331 | 3R | 25682105..25682291 | 932..1118 | 920 | 99.5 | Plus |
3R | 32079331 | 3R | 25682353..25682432 | 1116..1195 | 400 | 100 | Plus |
3R | 32079331 | 3R | 25681121..25681199 | 74..152 | 395 | 100 | Plus |
3R | 32079331 | 3R | 25680966..25681024 | 16..74 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:27:20 has no hits.
BO13863.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:58 Download gff for
BO13863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-RB | 1..1209 | 17..1223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:01 Download gff for
BO13863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-RB | 149..1360 | 16..1228 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:53 Download gff for
BO13863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-RA | 123..1328 | 17..1224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:58 Download gff for
BO13863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-RB | 149..1360 | 16..1228 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:44 Download gff for
BO13863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-RA | 123..1328 | 17..1224 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:44 Download gff for
BO13863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25680967..25681023 | 17..73 | 100 | -> | Plus |
3R | 25681121..25681198 | 74..151 | 100 | -> | Plus |
3R | 25681266..25682045 | 152..931 | 100 | -> | Plus |
3R | 25682105..25682291 | 932..1118 | 99 | -> | Plus |
3R | 25682356..25682431 | 1119..1194 | 100 | -> | Plus |
3R | 25683058..25683085 | 1195..1224 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:53 Download gff for
BO13863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21507827..21508013 | 932..1118 | 99 | -> | Plus |
arm_3R | 21508078..21508153 | 1119..1194 | 100 | -> | Plus |
arm_3R | 21508780..21508807 | 1195..1224 | 93 | | Plus |
arm_3R | 21506689..21506745 | 17..73 | 100 | -> | Plus |
arm_3R | 21506843..21506920 | 74..151 | 100 | -> | Plus |
arm_3R | 21506988..21507767 | 152..931 | 100 | -> | Plus |
BO13863.pep Sequence
Translation from 16 to 1240
> BO13863.pep
MALRLTQRLLQTQTPFLTRGYPLLVTKEKTEDVAHTKSALQKKVTGTDIP
SAQYGGRHAVTMLPGGGIGPELMGYVREIFRYCGAPIDFEVIDIDPSTEG
NDDLDYAITSIKRNGVALKGNIETKSQSLTEVSRNVAIRNELDLYVNVVH
CKSYPGIPARHHDIDVVLIRQNTDGEYAMLEHESVPGIVESMKVVTVENA
ERVARYAFEFARQNNRKKVTTIHKANIMKLSDGLFLEVANRVHKDYPELE
HNNMIIDNTCMQSVSNPHQFDVMNMTNLYGTIVSNVLCGLMGGAGLISGR
NYGDHYAIFEPGTRNTGTAIAGKNIANPVAMISASIDMLNHLGHKEHANV
IQEAVYQTIVNDAIRTPDIGGTNSSTDVVENILKILSAKRVNWPHGNYFS
QIASFLDH
BO13863.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5028-PB | 402 | CG5028-PB | 1..402 | 1..402 | 2086 | 100 | Plus |
CG5028-PA | 402 | CG5028-PA | 1..402 | 1..402 | 2086 | 100 | Plus |
CG5028-PD | 393 | CG5028-PD | 1..393 | 1..393 | 2033 | 100 | Plus |
CG5028-PC | 392 | CG5028-PC | 1..392 | 1..392 | 2022 | 100 | Plus |
CG6439-PB | 370 | CG6439-PB | 22..370 | 35..387 | 791 | 43.7 | Plus |