Clone Sequence Records
BO13864.3prime Sequence
482 bp (481 high quality bases) assembled on 2006-05-08
> BO13864.3prime
ATGGTCTAGAAAGCTTGCTCCTGGTGGCCACTGCATCTGGCGGCCGCCGA
GGAAGTGCAAATGCAAGTGGTAAACTGACTGGGCGCCGTGCTTGCCATTG
TTGATGACCACGCGGTAGCCATCCGCGAGGCCGAGCTCCTTGGCCACCTT
GCGGCCCACCAGCATGAGATGTCCCAGCAGATCGGCATCTCCATCCTCGG
CTAGCGAGAGTTGGGCAATTGGCTTGCGAGGAATCACGAGGAAGTGGGTT
GGTGCCTGGGGCGCCACATCGTGGAAGGCAACGCATTTATCATCCTCGTG
GATAAATTTGCATGGGATCTCCTTGCGCAAAATCTTGCCGAAAATGGTGT
CTTCACTGGCGGCTGCCGTTTGCGATTTTTCCACTTCGCTTGCCATTCTA
GCACTGCAGCTTGCTATTTGGCGAGAGCTGAAAACACGAAAGAAATTCCG
GCCGGTTGACAAGAACATGTCGACTGATAACT
BO13864.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2862-PA | 453 | CG2862-RA | 1..450 | 468..19 | 2250 | 100 | Minus |
CG2862-PB | 381 | CG2862-RB | 1..378 | 396..19 | 1890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2862-RC | 548 | CG2862-RC | 17..466 | 468..19 | 2250 | 100 | Minus |
CG2862-RA | 644 | CG2862-RA | 17..466 | 468..19 | 2250 | 100 | Minus |
CG2862-RB | 556 | CG2862-RB | 63..474 | 430..19 | 2060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2770460..2770726 | 285..19 | 1335 | 100 | Minus |
2L | 23513712 | 2L | 2770256..2770400 | 430..286 | 725 | 100 | Minus |
2L | 23513712 | 2L | 2770151..2770191 | 468..428 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:19:14 has no hits.
BO13864.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:07 Download gff for
BO13864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-PA | 1..453 | 15..468 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:24 Download gff for
BO13864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-PA | 1..453 | 15..468 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:59:41 Download gff for
BO13864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-RA | 14..470 | 14..473 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:14 Download gff for
BO13864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-RA | 14..470 | 14..473 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:14 Download gff for
BO13864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2770148..2770191 | 428..473 | 95 | -> | Minus |
2L | 2770259..2770400 | 286..427 | 100 | -> | Minus |
2L | 2770460..2770730 | 14..285 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:59:41 Download gff for
BO13864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2770148..2770191 | 428..473 | 95 | -> | Minus |
arm_2L | 2770259..2770400 | 286..427 | 100 | -> | Minus |
arm_2L | 2770460..2770730 | 14..285 | 99 | | Minus |
BO13864.5prime Sequence
482 bp (481 high quality bases) assembled on 2006-05-08
> BO13864.5prime
GAAGTTATCAGTCGACATGTTCTTGTCAACCGGCCGGAATTTCTTTCGTG
TTTTCAGCTCTCGCCAAATAGCAAGCTGCAGTGCTAGAATGGCAAGCGAA
GTGGAAAAATCGCAAACGGCAGCCGCCAGTGAAGACACCATTTTCGGCAA
GATTTTGCGCAAGGAGATCCCATGCAAATTTATCCACGAGGATGATAAAT
GCGTTGCCTTCCACGATGTGGCGCCCCAGGCACCAACCCACTTCCTCGTG
ATTCCTCGCAAGCCAATTGCCCAACTCTCGCTAGCCGAGGATGGAGATGC
CGATCTGCTGGGACATCTCATGCTGGTGGGCCGCAAGGTGGCCAAGGAGC
TCGGCCTCGCGGATGGCTACCGCGTGGTCATCAACAATGGCAAGCACGGC
GCCCAGTCAGTTTACCACTTGCATTTGCACTTCCTCGGCGGCCGCCAGAT
GCAGTGGCCACCAGGAGCAAGCTTTCTAGACC
BO13864.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2862-PA | 453 | CG2862-RA | 1..450 | 17..466 | 2250 | 100 | Plus |
CG2862-PB | 381 | CG2862-RB | 1..378 | 89..466 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2862-RC | 548 | CG2862-RC | 17..466 | 17..466 | 2250 | 100 | Plus |
CG2862-RA | 644 | CG2862-RA | 17..466 | 17..466 | 2250 | 100 | Plus |
CG2862-RB | 556 | CG2862-RB | 63..474 | 55..466 | 2060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:24:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2770460..2770726 | 200..466 | 1335 | 100 | Plus |
2L | 23513712 | 2L | 2770256..2770400 | 55..199 | 725 | 100 | Plus |
2L | 23513712 | 2L | 2770151..2770191 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:24:19 has no hits.
BO13864.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:08 Download gff for
BO13864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-PA | 1..453 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:25 Download gff for
BO13864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-PA | 1..453 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:15:55 Download gff for
BO13864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-RA | 14..470 | 12..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:29 Download gff for
BO13864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-RA | 14..470 | 12..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:29 Download gff for
BO13864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2770148..2770191 | 12..57 | 95 | -> | Plus |
2L | 2770259..2770400 | 58..199 | 100 | -> | Plus |
2L | 2770460..2770730 | 200..471 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:15:55 Download gff for
BO13864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2770148..2770191 | 12..57 | 95 | -> | Plus |
arm_2L | 2770259..2770400 | 58..199 | 100 | -> | Plus |
arm_2L | 2770460..2770730 | 200..471 | 99 | | Plus |
BO13864.complete Sequence
484 bp assembled on 2006-10-11
GenBank Submission: FJ632958
> BO13864.complete
GAAGTTATCAGTCGACATGTTCTTGTCAACCGGCCGGAATTTCTTTCGTG
TTTTCAGCTCTCGCCAAATAGCAAGCTGCAGTGCTAGAATGGCAAGCGAA
GTGGAAAAATCGCAAACGGCAGCCGCCAGTGAAGACACCATTTTCGGCAA
GATTTTGCGCAAGGAGATCCCATGCAAATTTATCCACGAGGATGATAAAT
GCGTTGCCTTCCACGATGTGGCGCCCCAGGCACCAACCCACTTCCTCGTG
ATTCCTCGCAAGCCAATTGCCCAACTCTCGCTAGCCGAGGATGGAGATGC
CGATCTGCTGGGACATCTCATGCTGGTGGGCCGCAAGGTGGCCAAGGAGC
TCGGCCTCGCGGATGGCTACCGCGTGGTCATCAACAATGGCAAGCACGGC
GCCCAGTCAGTTTACCACTTGCATTTGCACTTCCTCGGCGGCCGCCAGAT
GCAGTGGCCACCAGGAGCAAGCTTTCTAGACCAT
BO13864.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2862-RC | 453 | CG2862-PC | 1..450 | 17..466 | 2250 | 100 | Plus |
CG2862-RA | 453 | CG2862-PA | 1..450 | 17..466 | 2250 | 100 | Plus |
CG2862-RB | 381 | CG2862-PB | 1..378 | 89..466 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2862-RC | 548 | CG2862-RC | 17..466 | 17..466 | 2250 | 100 | Plus |
CG2862-RA | 644 | CG2862-RA | 17..466 | 17..466 | 2250 | 100 | Plus |
CG2862-RB | 556 | CG2862-RB | 63..474 | 55..466 | 2060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2770460..2770726 | 200..466 | 1335 | 100 | Plus |
2L | 23513712 | 2L | 2770256..2770400 | 55..199 | 725 | 100 | Plus |
2L | 23513712 | 2L | 2770151..2770191 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:41:09 has no hits.
BO13864.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:03 Download gff for
BO13864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-RA | 12..468 | 12..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:40 Download gff for
BO13864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-RA | 22..466 | 22..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:59 Download gff for
BO13864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-RA | 12..468 | 12..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:51 Download gff for
BO13864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-RA | 22..466 | 22..468 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:51 Download gff for
BO13864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2770460..2770726 | 200..468 | 99 | | Plus |
2L | 2770156..2770191 | 22..57 | 100 | -> | Plus |
2L | 2770259..2770400 | 58..199 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:40 Download gff for
BO13864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2770259..2770400 | 58..199 | 100 | -> | Plus |
arm_2L | 2770460..2770726 | 200..468 | 99 | | Plus |
arm_2L | 2770156..2770191 | 22..57 | 100 | -> | Plus |
BO13864.pep Sequence
Translation from 16 to 484
> BO13864.pep
MFLSTGRNFFRVFSSRQIASCSARMASEVEKSQTAAASEDTIFGKILRKE
IPCKFIHEDDKCVAFHDVAPQAPTHFLVIPRKPIAQLSLAEDGDADLLGH
LMLVGRKVAKELGLADGYRVVINNGKHGAQSVYHLHLHFLGGRQMQWPPG
ASFLDH
BO13864.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2862-PC | 150 | CG2862-PC | 1..150 | 1..150 | 785 | 100 | Plus |
CG2862-PA | 150 | CG2862-PA | 1..150 | 1..150 | 785 | 100 | Plus |
CG2862-PB | 126 | CG2862-PB | 1..126 | 25..150 | 665 | 100 | Plus |