Clone BO13864 Report

Search the DGRC for BO13864

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG2862-RA
Protein status:BO13864.pep: validated full length
Sequenced Size:484

Clone Sequence Records

BO13864.3prime Sequence

482 bp (481 high quality bases) assembled on 2006-05-08

> BO13864.3prime
ATGGTCTAGAAAGCTTGCTCCTGGTGGCCACTGCATCTGGCGGCCGCCGA
GGAAGTGCAAATGCAAGTGGTAAACTGACTGGGCGCCGTGCTTGCCATTG
TTGATGACCACGCGGTAGCCATCCGCGAGGCCGAGCTCCTTGGCCACCTT
GCGGCCCACCAGCATGAGATGTCCCAGCAGATCGGCATCTCCATCCTCGG
CTAGCGAGAGTTGGGCAATTGGCTTGCGAGGAATCACGAGGAAGTGGGTT
GGTGCCTGGGGCGCCACATCGTGGAAGGCAACGCATTTATCATCCTCGTG
GATAAATTTGCATGGGATCTCCTTGCGCAAAATCTTGCCGAAAATGGTGT
CTTCACTGGCGGCTGCCGTTTGCGATTTTTCCACTTCGCTTGCCATTCTA
GCACTGCAGCTTGCTATTTGGCGAGAGCTGAAAACACGAAAGAAATTCCG
GCCGGTTGACAAGAACATGTCGACTGATAACT

BO13864.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2862-PA 453 CG2862-RA 1..450 468..19 2250 100 Minus
CG2862-PB 381 CG2862-RB 1..378 396..19 1890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2862-RC 548 CG2862-RC 17..466 468..19 2250 100 Minus
CG2862-RA 644 CG2862-RA 17..466 468..19 2250 100 Minus
CG2862-RB 556 CG2862-RB 63..474 430..19 2060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2770460..2770726 285..19 1335 100 Minus
2L 23513712 2L 2770256..2770400 430..286 725 100 Minus
2L 23513712 2L 2770151..2770191 468..428 205 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:19:14 has no hits.

BO13864.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:07 Download gff for BO13864.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2862-PA 1..453 15..468 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:24 Download gff for BO13864.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2862-PA 1..453 15..468 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:59:41 Download gff for BO13864.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2862-RA 14..470 14..473 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:14 Download gff for BO13864.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2862-RA 14..470 14..473 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:14 Download gff for BO13864.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2770148..2770191 428..473 95 -> Minus
2L 2770259..2770400 286..427 100 -> Minus
2L 2770460..2770730 14..285 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:59:41 Download gff for BO13864.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2770148..2770191 428..473 95 -> Minus
arm_2L 2770259..2770400 286..427 100 -> Minus
arm_2L 2770460..2770730 14..285 99   Minus

BO13864.5prime Sequence

482 bp (481 high quality bases) assembled on 2006-05-08

> BO13864.5prime
GAAGTTATCAGTCGACATGTTCTTGTCAACCGGCCGGAATTTCTTTCGTG
TTTTCAGCTCTCGCCAAATAGCAAGCTGCAGTGCTAGAATGGCAAGCGAA
GTGGAAAAATCGCAAACGGCAGCCGCCAGTGAAGACACCATTTTCGGCAA
GATTTTGCGCAAGGAGATCCCATGCAAATTTATCCACGAGGATGATAAAT
GCGTTGCCTTCCACGATGTGGCGCCCCAGGCACCAACCCACTTCCTCGTG
ATTCCTCGCAAGCCAATTGCCCAACTCTCGCTAGCCGAGGATGGAGATGC
CGATCTGCTGGGACATCTCATGCTGGTGGGCCGCAAGGTGGCCAAGGAGC
TCGGCCTCGCGGATGGCTACCGCGTGGTCATCAACAATGGCAAGCACGGC
GCCCAGTCAGTTTACCACTTGCATTTGCACTTCCTCGGCGGCCGCCAGAT
GCAGTGGCCACCAGGAGCAAGCTTTCTAGACC

BO13864.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2862-PA 453 CG2862-RA 1..450 17..466 2250 100 Plus
CG2862-PB 381 CG2862-RB 1..378 89..466 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2862-RC 548 CG2862-RC 17..466 17..466 2250 100 Plus
CG2862-RA 644 CG2862-RA 17..466 17..466 2250 100 Plus
CG2862-RB 556 CG2862-RB 63..474 55..466 2060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2770460..2770726 200..466 1335 100 Plus
2L 23513712 2L 2770256..2770400 55..199 725 100 Plus
2L 23513712 2L 2770151..2770191 17..57 205 100 Plus
Blast to na_te.dros performed on 2015-02-11 14:24:19 has no hits.

BO13864.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:08 Download gff for BO13864.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2862-PA 1..453 17..470 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:25 Download gff for BO13864.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2862-PA 1..453 17..470 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:15:55 Download gff for BO13864.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2862-RA 14..470 12..471 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:29 Download gff for BO13864.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2862-RA 14..470 12..471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:29 Download gff for BO13864.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2770148..2770191 12..57 95 -> Plus
2L 2770259..2770400 58..199 100 -> Plus
2L 2770460..2770730 200..471 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:15:55 Download gff for BO13864.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2770148..2770191 12..57 95 -> Plus
arm_2L 2770259..2770400 58..199 100 -> Plus
arm_2L 2770460..2770730 200..471 99   Plus

BO13864.complete Sequence

484 bp assembled on 2006-10-11

GenBank Submission: FJ632958

> BO13864.complete
GAAGTTATCAGTCGACATGTTCTTGTCAACCGGCCGGAATTTCTTTCGTG
TTTTCAGCTCTCGCCAAATAGCAAGCTGCAGTGCTAGAATGGCAAGCGAA
GTGGAAAAATCGCAAACGGCAGCCGCCAGTGAAGACACCATTTTCGGCAA
GATTTTGCGCAAGGAGATCCCATGCAAATTTATCCACGAGGATGATAAAT
GCGTTGCCTTCCACGATGTGGCGCCCCAGGCACCAACCCACTTCCTCGTG
ATTCCTCGCAAGCCAATTGCCCAACTCTCGCTAGCCGAGGATGGAGATGC
CGATCTGCTGGGACATCTCATGCTGGTGGGCCGCAAGGTGGCCAAGGAGC
TCGGCCTCGCGGATGGCTACCGCGTGGTCATCAACAATGGCAAGCACGGC
GCCCAGTCAGTTTACCACTTGCATTTGCACTTCCTCGGCGGCCGCCAGAT
GCAGTGGCCACCAGGAGCAAGCTTTCTAGACCAT

BO13864.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2862-RC 453 CG2862-PC 1..450 17..466 2250 100 Plus
CG2862-RA 453 CG2862-PA 1..450 17..466 2250 100 Plus
CG2862-RB 381 CG2862-PB 1..378 89..466 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG2862-RC 548 CG2862-RC 17..466 17..466 2250 100 Plus
CG2862-RA 644 CG2862-RA 17..466 17..466 2250 100 Plus
CG2862-RB 556 CG2862-RB 63..474 55..466 2060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2770460..2770726 200..466 1335 100 Plus
2L 23513712 2L 2770256..2770400 55..199 725 100 Plus
2L 23513712 2L 2770151..2770191 17..57 205 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:41:09 has no hits.

BO13864.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:03 Download gff for BO13864.complete
Subject Subject Range Query Range Percent Splice Strand
CG2862-RA 12..468 12..471 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:40 Download gff for BO13864.complete
Subject Subject Range Query Range Percent Splice Strand
CG2862-RA 22..466 22..468 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:59 Download gff for BO13864.complete
Subject Subject Range Query Range Percent Splice Strand
CG2862-RA 12..468 12..471 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:51 Download gff for BO13864.complete
Subject Subject Range Query Range Percent Splice Strand
CG2862-RA 22..466 22..468 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:51 Download gff for BO13864.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2770460..2770726 200..468 99   Plus
2L 2770156..2770191 22..57 100 -> Plus
2L 2770259..2770400 58..199 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:40 Download gff for BO13864.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2770259..2770400 58..199 100 -> Plus
arm_2L 2770460..2770726 200..468 99   Plus
arm_2L 2770156..2770191 22..57 100 -> Plus

BO13864.pep Sequence

Translation from 16 to 484

> BO13864.pep
MFLSTGRNFFRVFSSRQIASCSARMASEVEKSQTAAASEDTIFGKILRKE
IPCKFIHEDDKCVAFHDVAPQAPTHFLVIPRKPIAQLSLAEDGDADLLGH
LMLVGRKVAKELGLADGYRVVINNGKHGAQSVYHLHLHFLGGRQMQWPPG
ASFLDH

BO13864.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2862-PC 150 CG2862-PC 1..150 1..150 785 100 Plus
CG2862-PA 150 CG2862-PA 1..150 1..150 785 100 Plus
CG2862-PB 126 CG2862-PB 1..126 25..150 665 100 Plus