Clone BO13865 Report

Search the DGRC for BO13865

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:65
Vector:pDNR-Dual
Associated Gene/Transcriptyellow-d2-RA
Protein status:BO13865.pep: validated full length
Sequenced Size:1270

Clone Sequence Records

BO13865.3prime Sequence

803 bp (743 high quality bases) assembled on 2006-05-08

> BO13865.3prime
ATGGTCTAGAAAGCTTGCGTTGCAAGGCCTGCCGCTGAGCAGCTCCTGAA
CACCGCACTTCTGTATGCGAAAGTTTATCTCCTTGTAGTCCAGACCCGCT
CCGAAGGCTTTCTGCAGCCGATTCGACAGCACCCACAGTTCCTCCTTGCC
CTCGTGGTTGCGCACTATCTTGAGTCCACTGGCGAACTGCAGTCGCTGCT
CATCCTCCACCAGCATGACCAGATTCTGATGGCTGTAGCCGGTGCGAATG
TTCCAGGCCAAAAGGCTGGCCGGCTGGACCAGGCCGCAGATCAGAAAGCC
GGACTCGCTCATGGCCGCCGCAACGCATTGACTTCCCCGCTTGCCCAGCA
ACTGGAACTGATCCAAGGCAGCGCTCACATCGTTCAGCCGCCAGTTGCTG
CCGTTGTTGACCACATCCAACGGAATGGCCATTTGCCACTCGCTGGACAG
AGAGTGGAAATACATCATCCGCCGGCCACCCAAGCCGTGGGGCGTTAGAG
TGGTAGACACCGTGCCGTCCCACAGCTGGAAGCTCTCGCCTGCTATCGTG
AATGTGCCGAAGTCTGGATGAGGATACGTAAACTTGTTCTCAATCCGCCA
CGACTGCTGGGCTGCCACGTCATACACCACAATGCCGTCTCCAATGGAGT
CCGCCATGTACACGAATCCCACATCGCAGTTGTGCGGATCCAGCTCCACG
GTGGGCGTGACAAAGCGACTCACGCCCTCCTTGTACAATCGCTTGGGCAT
CTTGTACTGATGCGCGACTTTTCCGCTTTCCAAGTCAATAACGTACAGCT
GCG

BO13865.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9891-PA 1239 yellow-d2-RA 452..1236 803..19 3900 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-d2-RA 1341 CG9891-RA 514..1298 803..19 3910 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23381764..23382548 803..19 3910 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 18:19:01 has no hits.

BO13865.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:09 Download gff for BO13865.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9891-PA 452..1239 16..803 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:27 Download gff for BO13865.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9891-PA 452..1239 16..803 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:57:19 Download gff for BO13865.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-d2-RA 514..1298 19..803 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:41:18 Download gff for BO13865.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-d2-RA 514..1298 19..803 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:41:18 Download gff for BO13865.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23381764..23382548 19..803 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:57:19 Download gff for BO13865.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19269287..19270071 19..803 99   Minus

BO13865.5prime Sequence

787 bp (784 high quality bases) assembled on 2006-05-08

> BO13865.5prime
GAAGTTATCAGTCGACATGGAGCGTTGGATTGTCTTCGGTGTCTGCTGTT
GGTGCTGGCTGGCAGCATCCGCCCAGGCCTTGGAAAGTGTCTTTGGAGCC
TACAATCTGGAGCTGGAGTTTCCATCGCCGCAGGAAAGACAGCGCGCGCT
GAGAGATGGACTATACGATCCGGGCAGCGTGATCCCCATCGATGTGGACG
TCTACTACAAGCATGGCGATGCCACACCCTCGATATTCGTGACCATTCCG
CGTTTTGCCAAGGGCGTTCCATACTCTCTGGCCTACGTCACAAACGAAAT
GCGACCGAACGGGACTCTCCTGCAGGCTTATCCCAGCTACGAGTGGCACA
AATCCCACGGAGCCGACTGCAATGGATTGACTTCGGTGTACCGCACACAG
ATAGACGAGTGCGGGCGCATGTGGATCCTGGACAGCGGCGAGATCGACTT
CATTCAGCACTGCCCGCCGCAGCTGTACGCTATTGACTTGGAAAGCGGAA
AAGTCGCGCATCAGTACAAGATGCCCAAGCGATTGTACAAGGAGGGCGTG
AGTCGCTTTGTCACGCCCACCGTGGAGCTGGATCCGCACAACTGCGATGT
GGGATTCGTGTACATGGCGGACTCCATTGGAGACGGCATTGTGGTGTATG
ACGTGGCAGCCCAGCAGTCGTGGCGGATTGAGAACAAGTTTACGTATCCT
CATCCAGACTTCGGCACATTCACGATAGCAGGCGAGAGCTTCCAGCTGTG
GGACGGCACGGTGTCTACCACTCTAACGCCCCACGGC

BO13865.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9891-PA 1239 yellow-d2-RA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-d2-RA 1341 CG9891-RA 62..833 16..787 3860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23381509..23382083 213..787 2875 100 Plus
2R 25286936 2R 23381258..23381454 16..212 985 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:00:49 has no hits.

BO13865.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:10 Download gff for BO13865.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9891-PA 1..771 17..787 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:28 Download gff for BO13865.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9891-PA 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:17:37 Download gff for BO13865.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-d2-RA 55..833 7..787 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:50 Download gff for BO13865.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-d2-RA 55..833 7..787 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:50 Download gff for BO13865.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23381251..23381454 7..212 98 -> Plus
2R 23381509..23382083 213..787 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:17:37 Download gff for BO13865.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19268774..19268977 7..212 98 -> Plus
arm_2R 19269032..19269606 213..787 100   Plus

BO13865.complete Sequence

1270 bp assembled on 2006-10-11

GenBank Submission: FJ632959

> BO13865.complete
GAAGTTATCAGTCGACATGGAGCGTTGGATTGTCTTCGGTGTCTGCTGTT
GGTGCTGGCTGGCAGCATCCGCCCAGGCCTTGGAAAGTGTCTTTGGAGCC
TACAATCTGGAGCTGGAGTTTCCATCGCCGCAGGAAAGACAGCGCGCGCT
GAGAGATGGACTATACGATCCGGGCAGCGTGATCCCCATCGATGTGGACG
TCTACTACAAGCATGGCGATGCCACACCCTCGATATTCGTGACCATTCCG
CGTTTTGCCAAGGGCGTTCCATACTCTCTGGCCTACGTCACAAACGAAAT
GCGACCGAACGGGACTCTCCTGCAGGCTTATCCCAGCTACGAGTGGCACA
AATCCCACGGAGCCGACTGCAATGGATTGACTTCGGTGTACCGCACACAG
ATAGACGAGTGCGGGCGCATGTGGATCCTGGACAGCGGCGAGATCGACTT
CATTCAGCACTGCCCGCCGCAGCTGTACGCTATTGACTTGGAAAGCGGAA
AAGTCGCGCATCAGTACAAGATGCCCAAGCGATTGTACAAGGAGGGCGTG
AGTCGCTTTGTCACGCCCACCGTGGAGCTGGATCCGCACAACTGCGATGT
GGGATTCGTGTACATGGCGGACTCCATTGGAGACGGCATTGTGGTGTATG
ACGTGGCAGCCCAGCAGTCGTGGCGGATTGAGAACAAGTTTACGTATCCT
CATCCAGACTTCGGCACATTCACGATAGCAGGCGAGAGCTTCCAGCTGTG
GGACGGCACGGTGTCTACCACTCTAACGCCCCACGGCTTGGGTGGCCGGC
GGATGATGTATTTCCACTCTCTGTCCAGCGAGTGGCAAATGGCCATTCCG
TTGGATGTGGTCAACAACGGCAGCAACTGGCGGCTGAACGATGTGAGCGC
TGCCTTGGATCAGTTCCAGTTGCTGGGCAAGCGGGGAAGTCAATGCGTTG
CGGCGGCCATGAGCGAGTCCGGCTTTCTGATCTGCGGCCTGGTCCAGCCG
GCCAGCCTTTTGGCCTGGAACATTCGCACCGGCTACAGCCATCAGAATCT
GGTCATGCTGGTGGAGGATGAGCAGCGACTGCAGTTCGCCAGTGGACTCA
AGATAGTGCGCAACCACGAGGGCAAGGAGGAACTGTGGGTGCTGTCGAAT
CGGCTGCAGAAAGCCTTCGGAGCGGGTCTGGACTACAAGGAGATAAACTT
TCGCATACAGAAGTGCGGTGTTCAGGAGCTGCTCAGCGGCAGGCCTTGCA
ACGCAAGCTTTCTAGACCAT

BO13865.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-d2-RA 1239 CG9891-PA 1..1236 17..1252 6180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-d2-RA 1341 CG9891-RA 62..1298 16..1252 6185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23381509..23382548 213..1252 5200 100 Plus
2R 25286936 2R 23381258..23381454 16..212 985 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:51:10 has no hits.

BO13865.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:24:00 Download gff for BO13865.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d2-RA 1..1239 17..1255 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:05 Download gff for BO13865.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d2-RA 53..1296 7..1252 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:50 Download gff for BO13865.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d2-RA 63..1298 17..1254 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:24:00 Download gff for BO13865.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d2-RA 53..1296 7..1252 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:41 Download gff for BO13865.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d2-RA 63..1298 17..1254 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:41 Download gff for BO13865.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23381259..23381454 17..212 100 -> Plus
2R 23381509..23382548 213..1254 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:50 Download gff for BO13865.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19268782..19268977 17..212 100 -> Plus
arm_2R 19269032..19270071 213..1254 99   Plus

BO13865.pep Sequence

Translation from 16 to 1270

> BO13865.pep
MERWIVFGVCCWCWLAASAQALESVFGAYNLELEFPSPQERQRALRDGLY
DPGSVIPIDVDVYYKHGDATPSIFVTIPRFAKGVPYSLAYVTNEMRPNGT
LLQAYPSYEWHKSHGADCNGLTSVYRTQIDECGRMWILDSGEIDFIQHCP
PQLYAIDLESGKVAHQYKMPKRLYKEGVSRFVTPTVELDPHNCDVGFVYM
ADSIGDGIVVYDVAAQQSWRIENKFTYPHPDFGTFTIAGESFQLWDGTVS
TTLTPHGLGGRRMMYFHSLSSEWQMAIPLDVVNNGSNWRLNDVSAALDQF
QLLGKRGSQCVAAAMSESGFLICGLVQPASLLAWNIRTGYSHQNLVMLVE
DEQRLQFASGLKIVRNHEGKEELWVLSNRLQKAFGAGLDYKEINFRIQKC
GVQELLSGRPCNASFLDH

BO13865.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-d2-PA 412 CG9891-PA 1..412 1..412 2224 100 Plus
yellow-e2-PB 435 CG17044-PB 44..434 25..411 1123 53.3 Plus
yellow-d-PA 432 CG9889-PA 43..416 31..408 769 41.4 Plus
yellow-e3-PA 409 CG17045-PA 32..397 44..411 581 35.1 Plus
yellow-h-PA 463 CG1629-PA 49..441 18..412 463 29 Plus