Clone Sequence Records
BO13865.3prime Sequence
803 bp (743 high quality bases) assembled on 2006-05-08
> BO13865.3prime
ATGGTCTAGAAAGCTTGCGTTGCAAGGCCTGCCGCTGAGCAGCTCCTGAA
CACCGCACTTCTGTATGCGAAAGTTTATCTCCTTGTAGTCCAGACCCGCT
CCGAAGGCTTTCTGCAGCCGATTCGACAGCACCCACAGTTCCTCCTTGCC
CTCGTGGTTGCGCACTATCTTGAGTCCACTGGCGAACTGCAGTCGCTGCT
CATCCTCCACCAGCATGACCAGATTCTGATGGCTGTAGCCGGTGCGAATG
TTCCAGGCCAAAAGGCTGGCCGGCTGGACCAGGCCGCAGATCAGAAAGCC
GGACTCGCTCATGGCCGCCGCAACGCATTGACTTCCCCGCTTGCCCAGCA
ACTGGAACTGATCCAAGGCAGCGCTCACATCGTTCAGCCGCCAGTTGCTG
CCGTTGTTGACCACATCCAACGGAATGGCCATTTGCCACTCGCTGGACAG
AGAGTGGAAATACATCATCCGCCGGCCACCCAAGCCGTGGGGCGTTAGAG
TGGTAGACACCGTGCCGTCCCACAGCTGGAAGCTCTCGCCTGCTATCGTG
AATGTGCCGAAGTCTGGATGAGGATACGTAAACTTGTTCTCAATCCGCCA
CGACTGCTGGGCTGCCACGTCATACACCACAATGCCGTCTCCAATGGAGT
CCGCCATGTACACGAATCCCACATCGCAGTTGTGCGGATCCAGCTCCACG
GTGGGCGTGACAAAGCGACTCACGCCCTCCTTGTACAATCGCTTGGGCAT
CTTGTACTGATGCGCGACTTTTCCGCTTTCCAAGTCAATAACGTACAGCT
GCG
BO13865.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9891-PA | 1239 | yellow-d2-RA | 452..1236 | 803..19 | 3900 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-d2-RA | 1341 | CG9891-RA | 514..1298 | 803..19 | 3910 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23381764..23382548 | 803..19 | 3910 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:19:01 has no hits.
BO13865.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:09 Download gff for
BO13865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9891-PA | 452..1239 | 16..803 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:27 Download gff for
BO13865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9891-PA | 452..1239 | 16..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:57:19 Download gff for
BO13865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-d2-RA | 514..1298 | 19..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:41:18 Download gff for
BO13865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-d2-RA | 514..1298 | 19..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:41:18 Download gff for
BO13865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23381764..23382548 | 19..803 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:57:19 Download gff for
BO13865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19269287..19270071 | 19..803 | 99 | | Minus |
BO13865.5prime Sequence
787 bp (784 high quality bases) assembled on 2006-05-08
> BO13865.5prime
GAAGTTATCAGTCGACATGGAGCGTTGGATTGTCTTCGGTGTCTGCTGTT
GGTGCTGGCTGGCAGCATCCGCCCAGGCCTTGGAAAGTGTCTTTGGAGCC
TACAATCTGGAGCTGGAGTTTCCATCGCCGCAGGAAAGACAGCGCGCGCT
GAGAGATGGACTATACGATCCGGGCAGCGTGATCCCCATCGATGTGGACG
TCTACTACAAGCATGGCGATGCCACACCCTCGATATTCGTGACCATTCCG
CGTTTTGCCAAGGGCGTTCCATACTCTCTGGCCTACGTCACAAACGAAAT
GCGACCGAACGGGACTCTCCTGCAGGCTTATCCCAGCTACGAGTGGCACA
AATCCCACGGAGCCGACTGCAATGGATTGACTTCGGTGTACCGCACACAG
ATAGACGAGTGCGGGCGCATGTGGATCCTGGACAGCGGCGAGATCGACTT
CATTCAGCACTGCCCGCCGCAGCTGTACGCTATTGACTTGGAAAGCGGAA
AAGTCGCGCATCAGTACAAGATGCCCAAGCGATTGTACAAGGAGGGCGTG
AGTCGCTTTGTCACGCCCACCGTGGAGCTGGATCCGCACAACTGCGATGT
GGGATTCGTGTACATGGCGGACTCCATTGGAGACGGCATTGTGGTGTATG
ACGTGGCAGCCCAGCAGTCGTGGCGGATTGAGAACAAGTTTACGTATCCT
CATCCAGACTTCGGCACATTCACGATAGCAGGCGAGAGCTTCCAGCTGTG
GGACGGCACGGTGTCTACCACTCTAACGCCCCACGGC
BO13865.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9891-PA | 1239 | yellow-d2-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-d2-RA | 1341 | CG9891-RA | 62..833 | 16..787 | 3860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23381509..23382083 | 213..787 | 2875 | 100 | Plus |
2R | 25286936 | 2R | 23381258..23381454 | 16..212 | 985 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:00:49 has no hits.
BO13865.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:10 Download gff for
BO13865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9891-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:28 Download gff for
BO13865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9891-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:17:37 Download gff for
BO13865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-d2-RA | 55..833 | 7..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:50 Download gff for
BO13865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-d2-RA | 55..833 | 7..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:50 Download gff for
BO13865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23381251..23381454 | 7..212 | 98 | -> | Plus |
2R | 23381509..23382083 | 213..787 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:17:37 Download gff for
BO13865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19268774..19268977 | 7..212 | 98 | -> | Plus |
arm_2R | 19269032..19269606 | 213..787 | 100 | | Plus |
BO13865.complete Sequence
1270 bp assembled on 2006-10-11
GenBank Submission: FJ632959
> BO13865.complete
GAAGTTATCAGTCGACATGGAGCGTTGGATTGTCTTCGGTGTCTGCTGTT
GGTGCTGGCTGGCAGCATCCGCCCAGGCCTTGGAAAGTGTCTTTGGAGCC
TACAATCTGGAGCTGGAGTTTCCATCGCCGCAGGAAAGACAGCGCGCGCT
GAGAGATGGACTATACGATCCGGGCAGCGTGATCCCCATCGATGTGGACG
TCTACTACAAGCATGGCGATGCCACACCCTCGATATTCGTGACCATTCCG
CGTTTTGCCAAGGGCGTTCCATACTCTCTGGCCTACGTCACAAACGAAAT
GCGACCGAACGGGACTCTCCTGCAGGCTTATCCCAGCTACGAGTGGCACA
AATCCCACGGAGCCGACTGCAATGGATTGACTTCGGTGTACCGCACACAG
ATAGACGAGTGCGGGCGCATGTGGATCCTGGACAGCGGCGAGATCGACTT
CATTCAGCACTGCCCGCCGCAGCTGTACGCTATTGACTTGGAAAGCGGAA
AAGTCGCGCATCAGTACAAGATGCCCAAGCGATTGTACAAGGAGGGCGTG
AGTCGCTTTGTCACGCCCACCGTGGAGCTGGATCCGCACAACTGCGATGT
GGGATTCGTGTACATGGCGGACTCCATTGGAGACGGCATTGTGGTGTATG
ACGTGGCAGCCCAGCAGTCGTGGCGGATTGAGAACAAGTTTACGTATCCT
CATCCAGACTTCGGCACATTCACGATAGCAGGCGAGAGCTTCCAGCTGTG
GGACGGCACGGTGTCTACCACTCTAACGCCCCACGGCTTGGGTGGCCGGC
GGATGATGTATTTCCACTCTCTGTCCAGCGAGTGGCAAATGGCCATTCCG
TTGGATGTGGTCAACAACGGCAGCAACTGGCGGCTGAACGATGTGAGCGC
TGCCTTGGATCAGTTCCAGTTGCTGGGCAAGCGGGGAAGTCAATGCGTTG
CGGCGGCCATGAGCGAGTCCGGCTTTCTGATCTGCGGCCTGGTCCAGCCG
GCCAGCCTTTTGGCCTGGAACATTCGCACCGGCTACAGCCATCAGAATCT
GGTCATGCTGGTGGAGGATGAGCAGCGACTGCAGTTCGCCAGTGGACTCA
AGATAGTGCGCAACCACGAGGGCAAGGAGGAACTGTGGGTGCTGTCGAAT
CGGCTGCAGAAAGCCTTCGGAGCGGGTCTGGACTACAAGGAGATAAACTT
TCGCATACAGAAGTGCGGTGTTCAGGAGCTGCTCAGCGGCAGGCCTTGCA
ACGCAAGCTTTCTAGACCAT
BO13865.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:51:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-d2-RA | 1239 | CG9891-PA | 1..1236 | 17..1252 | 6180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-d2-RA | 1341 | CG9891-RA | 62..1298 | 16..1252 | 6185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23381509..23382548 | 213..1252 | 5200 | 100 | Plus |
2R | 25286936 | 2R | 23381258..23381454 | 16..212 | 985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:51:10 has no hits.
BO13865.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:24:00 Download gff for
BO13865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-d2-RA | 1..1239 | 17..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:05 Download gff for
BO13865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-d2-RA | 53..1296 | 7..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:50 Download gff for
BO13865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-d2-RA | 63..1298 | 17..1254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:24:00 Download gff for
BO13865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-d2-RA | 53..1296 | 7..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:41 Download gff for
BO13865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-d2-RA | 63..1298 | 17..1254 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:41 Download gff for
BO13865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23381259..23381454 | 17..212 | 100 | -> | Plus |
2R | 23381509..23382548 | 213..1254 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:50 Download gff for
BO13865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19268782..19268977 | 17..212 | 100 | -> | Plus |
arm_2R | 19269032..19270071 | 213..1254 | 99 | | Plus |
BO13865.pep Sequence
Translation from 16 to 1270
> BO13865.pep
MERWIVFGVCCWCWLAASAQALESVFGAYNLELEFPSPQERQRALRDGLY
DPGSVIPIDVDVYYKHGDATPSIFVTIPRFAKGVPYSLAYVTNEMRPNGT
LLQAYPSYEWHKSHGADCNGLTSVYRTQIDECGRMWILDSGEIDFIQHCP
PQLYAIDLESGKVAHQYKMPKRLYKEGVSRFVTPTVELDPHNCDVGFVYM
ADSIGDGIVVYDVAAQQSWRIENKFTYPHPDFGTFTIAGESFQLWDGTVS
TTLTPHGLGGRRMMYFHSLSSEWQMAIPLDVVNNGSNWRLNDVSAALDQF
QLLGKRGSQCVAAAMSESGFLICGLVQPASLLAWNIRTGYSHQNLVMLVE
DEQRLQFASGLKIVRNHEGKEELWVLSNRLQKAFGAGLDYKEINFRIQKC
GVQELLSGRPCNASFLDH
BO13865.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-d2-PA | 412 | CG9891-PA | 1..412 | 1..412 | 2224 | 100 | Plus |
yellow-e2-PB | 435 | CG17044-PB | 44..434 | 25..411 | 1123 | 53.3 | Plus |
yellow-d-PA | 432 | CG9889-PA | 43..416 | 31..408 | 769 | 41.4 | Plus |
yellow-e3-PA | 409 | CG17045-PA | 32..397 | 44..411 | 581 | 35.1 | Plus |
yellow-h-PA | 463 | CG1629-PA | 49..441 | 18..412 | 463 | 29 | Plus |