Clone BO13869 Report

Search the DGRC for BO13869

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG30503-RA
Protein status:BO13869.pep: validated full length
Sequenced Size:553

Clone Sequence Records

BO13869.3prime Sequence

551 bp (550 high quality bases) assembled on 2006-05-08

> BO13869.3prime
ATGGTCTAGAAAGCTTGCATCTCGGGAGTCCTCCTCGCTGCCGCTTACGT
GTGTGTAGAGGGCCAAGTCGTAGAACTGCCAGCGCTGCGGCTGACCTTCG
TCCACTCGGTAGCTGAGACATCGTGTCTCGAACAGGTCGGCCTGCTTCTC
CTGGCAGGAAACGATGGGATGCCCGTAGCCAAAGCACACCTCCTTGGTGT
TGAAGTAGATTTTGCCAAGAGCCAGGGAGTGTCCGTTTCGCAGAGCGGTG
AGGCAGTTCCGGAAGGCCGACTCGCAGGCACACGAGAATATGGGGAAAAA
CCCGTCGTTTCTCAGGCCAAAGGCTTCCTCCAGCGGCGGAATCTTCTCCT
CACAGTTGTCGTGCGCCCGGCAGCACGTGTCCACTTCGCGCTCAGTGCCC
AGGTCATCGTAGTTGGCTGCTATGTTCCCGGGTCCACACCACTTTGTGCC
CGGAACTGTAATGCTCAATCCCGCAGCCGCATGGCTGGCATAGATCAGCG
TTAGGAGAACAGTAAGAAAAGCGGCACGCGAAAGCATGTCGACTGATAAC
T

BO13869.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-PA 522 CG30503-RA 1..519 537..19 2595 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-RB 1842 CG30503-RB 1133..1651 537..19 2595 100 Minus
CG30503-RA 741 CG30503-RA 32..550 537..19 2595 100 Minus
kappaB-Ras-RB 1842 CG1669-RB 1133..1651 537..19 2595 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7444015..7444285 19..289 1355 100 Plus
2R 25286936 2R 7444349..7444596 290..537 1240 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:20:26 has no hits.

BO13869.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:15 Download gff for BO13869.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30503-PA 1..522 16..537 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:35 Download gff for BO13869.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30503-PA 1..522 16..537 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:38:25 Download gff for BO13869.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30503-RA 26..557 11..544 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:38:06 Download gff for BO13869.3prime
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RB 1127..1658 11..544 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:38:06 Download gff for BO13869.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7444011..7444285 19..289 98 <- Plus
2R 7444349..7444602 290..544 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:38:25 Download gff for BO13869.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3331516..3331790 19..289 98 <- Plus
arm_2R 3331854..3332107 290..544 98   Plus

BO13869.5prime Sequence

551 bp (550 high quality bases) assembled on 2006-05-08

> BO13869.5prime
GAAGTTATCAGTCGACATGCTTTCGCGTGCCGCTTTTCTTACTGTTCTCC
TAACGCTGATCTATGCCAGCCATGCGGCTGCGGGATTGAGCATTACAGTT
CCGGGCACAAAGTGGTGTGGACCCGGGAACATAGCAGCCAACTACGATGA
CCTGGGCACTGAGCGCGAAGTGGACACGTGCTGCCGGGCGCACGACAACT
GTGAGGAGAAGATTCCGCCGCTGGAGGAAGCCTTTGGCCTGAGAAACGAC
GGGTTTTTCCCCATATTCTCGTGTGCCTGCGAGTCGGCCTTCCGGAACTG
CCTCACCGCTCTGCGAAACGGACACTCCCTGGCTCTTGGCAAAATCTACT
TCAACACCAAGGAGGTGTGCTTTGGCTACGGGCATCCCATCGTTTCCTGC
CAGGAGAAGCAGGCCGACCTGTTCGAGACACGATGTCTCAGCTACCGAGT
GGACGAAGGTCAGCCGCAGCGCTGGCAGTTCTACGACTTGGCCCTCTACA
CACACGTAAGCGGCAGCGAGGAGGACTCCCGAGATGCAAGCTTTCTAGAC
C

BO13869.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-PA 522 CG30503-RA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-RB 1842 CG30503-RB 1133..1651 17..535 2595 100 Plus
CG30503-RA 741 CG30503-RA 32..550 17..535 2595 100 Plus
kappaB-Ras-RB 1842 CG1669-RB 1133..1651 17..535 2595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7444015..7444285 535..265 1355 100 Minus
2R 25286936 2R 7444349..7444596 264..17 1240 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:09:10 has no hits.

BO13869.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:16 Download gff for BO13869.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30503-PA 1..522 17..538 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:36 Download gff for BO13869.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30503-PA 1..522 17..538 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:15:23 Download gff for BO13869.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30503-RA 26..557 10..543 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:46:21 Download gff for BO13869.5prime
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RB 1127..1658 10..543 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:46:21 Download gff for BO13869.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7444011..7444285 265..535 98 <- Minus
2R 7444349..7444602 10..264 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:15:23 Download gff for BO13869.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3331516..3331790 265..535 98 <- Minus
arm_2R 3331854..3332107 10..264 98   Minus

BO13869.complete Sequence

553 bp assembled on 2006-10-11

GenBank Submission: FJ632960

> BO13869.complete
GAAGTTATCAGTCGACATGCTTTCGCGTGCCGCTTTTCTTACTGTTCTCC
TAACGCTGATCTATGCCAGCCATGCGGCTGCGGGATTGAGCATTACAGTT
CCGGGCACAAAGTGGTGTGGACCCGGGAACATAGCAGCCAACTACGATGA
CCTGGGCACTGAGCGCGAAGTGGACACGTGCTGCCGGGCGCACGACAACT
GTGAGGAGAAGATTCCGCCGCTGGAGGAAGCCTTTGGCCTGAGAAACGAC
GGGTTTTTCCCCATATTCTCGTGTGCCTGCGAGTCGGCCTTCCGGAACTG
CCTCACCGCTCTGCGAAACGGACACTCCCTGGCTCTTGGCAAAATCTACT
TCAACACCAAGGAGGTGTGCTTTGGCTACGGGCATCCCATCGTTTCCTGC
CAGGAGAAGCAGGCCGACCTGTTCGAGACACGATGTCTCAGCTACCGAGT
GGACGAAGGTCAGCCGCAGCGCTGGCAGTTCTACGACTTGGCCCTCTACA
CACACGTAAGCGGCAGCGAGGAGGACTCCCGAGATGCAAGCTTTCTAGAC
CAT

BO13869.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-RB 522 CG30503-PB 1..519 17..535 2595 100 Plus
CG30503-RA 522 CG30503-PA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-RB 1842 CG30503-RB 1133..1651 17..535 2595 100 Plus
CG30503-RA 741 CG30503-RA 32..550 17..535 2595 100 Plus
kappaB-Ras-RB 1842 CG1669-RB 1133..1651 17..535 2595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7444015..7444285 535..265 1355 100 Minus
2R 25286936 2R 7444349..7444596 264..17 1240 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:12:51 has no hits.

BO13869.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:24:02 Download gff for BO13869.complete
Subject Subject Range Query Range Percent Splice Strand
CG30503-RB 1..522 17..538 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:06 Download gff for BO13869.complete
Subject Subject Range Query Range Percent Splice Strand
CG30503-RB 1096..1627 10..543 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:53 Download gff for BO13869.complete
Subject Subject Range Query Range Percent Splice Strand
CG30503-RA 32..550 17..537 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:24:02 Download gff for BO13869.complete
Subject Subject Range Query Range Percent Splice Strand
CG30503-RB 1096..1627 10..543 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:53 Download gff for BO13869.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RB 1133..1651 17..537 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:53 Download gff for BO13869.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7444012..7444285 265..537 99 <- Minus
2R 7444349..7444596 17..264 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:53 Download gff for BO13869.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3331517..3331790 265..537 99 <- Minus
arm_2R 3331854..3332101 17..264 100   Minus

BO13869.pep Sequence

Translation from 16 to 553

> BO13869.pep
MLSRAAFLTVLLTLIYASHAAAGLSITVPGTKWCGPGNIAANYDDLGTER
EVDTCCRAHDNCEEKIPPLEEAFGLRNDGFFPIFSCACESAFRNCLTALR
NGHSLALGKIYFNTKEVCFGYGHPIVSCQEKQADLFETRCLSYRVDEGQP
QRWQFYDLALYTHVSGSEEDSRDASFLDH

BO13869.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-PB 173 CG30503-PB 1..173 1..173 942 100 Plus
CG30503-PA 173 CG30503-PA 1..173 1..173 942 100 Plus
sPLA2-PC 186 CG11124-PC 43..180 26..162 396 50 Plus
sPLA2-PA 186 CG11124-PA 43..180 26..162 396 50 Plus
CG3009-PD 239 CG3009-PD 92..196 16..119 225 42.9 Plus