Clone Sequence Records
BO13870.3prime Sequence
563 bp (562 high quality bases) assembled on 2006-05-08
> BO13870.3prime
ATGGTCTAGAAAGCTTGCGTCCATCAGTCGAACGCCGGCTTGAACGTCAT
CGGCCATGCTGACTCCCTTCTTTTTCTTGCCTTCGCCGGCGGGCTTCTTC
TTGGTCAGGACTAGGGTTTCCGGCTCATTCTGCGACTGCTGACGCTTGCC
ATTTCCGCTGGCTCCGCCACCACCACCTCCGCCGCCTCCCCCTCCGCCGC
TGTTGCTTCTCAGCTTGAAACGCGTCGTGGCCGCCGCCGCATTGTTGTTG
GCGCAATTGCATATGGCATCGAAGATCCGCACCACGAATCCTCGAGCGCG
ATTCACCACCTTGCCGTTCTTAAAATTCGGTCGTTTTTCCTTGCCCTGTT
GCGATTTCTGGCTCTCAACTGCCCGCCTGTTCGCCTCCGTCTCAGCCCGC
AGGAGCACATCGTCGAGCGCCTCCCGCAACGCGGCCATGTTCTGGGGATT
TTGCTTGAAGGCCTCAATCCGCGCCTCCAGTGACTCCGTTTCGATTCCAT
CAACGCTGTCCGGAGACGCTGGCTCGGGATCCGCAAATCTGGCATGCATG
TCGACTGATAACT
BO13870.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-PB | 534 | CG9368-RB | 1..531 | 549..19 | 2655 | 100 | Minus |
CG9368-PA | 549 | CG9368-RA | 239..546 | 326..19 | 1540 | 100 | Minus |
CG9368-PA | 549 | CG9368-RA | 1..223 | 549..327 | 1115 | 100 | Minus |
CG9368-PC | 336 | CG9368-RC | 1..219 | 545..327 | 1095 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:06:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-RB | 1813 | CG9368-RB | 141..671 | 549..19 | 2655 | 100 | Minus |
CG9368-RA | 1828 | CG9368-RA | 141..686 | 549..19 | 2495 | 97.3 | Minus |
CG9368-RD | 2423 | CG9368-RD | 974..1281 | 326..19 | 1540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:05:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19602671..19602978 | 326..19 | 1540 | 100 | Minus |
3L | 28110227 | 3L | 19601773..19601977 | 549..345 | 1025 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:06:01 has no hits.
BO13870.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:17 Download gff for
BO13870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-PB | 1..534 | 15..549 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:38 Download gff for
BO13870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-PB | 1..534 | 15..549 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:58:58 Download gff for
BO13870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 133..682 | 7..557 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:33 Download gff for
BO13870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 133..682 | 7..557 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:33 Download gff for
BO13870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19601765..19601976 | 346..557 | 98 | -> | Minus |
3L | 19602042..19602060 | 327..345 | 100 | -> | Minus |
3L | 19602671..19602989 | 7..326 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:58:58 Download gff for
BO13870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19594865..19595076 | 346..557 | 98 | -> | Minus |
arm_3L | 19595142..19595160 | 327..345 | 100 | -> | Minus |
arm_3L | 19595771..19596089 | 7..326 | 98 | | Minus |
BO13870.5prime Sequence
563 bp (562 high quality bases) assembled on 2006-05-08
> BO13870.5prime
GAAGTTATCAGTCGACATGCATGCCAGATTTGCGGATCCCGAGCCAGCGT
CTCCGGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATT
GAGGCCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCT
CGACGATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTG
AGAGCCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAATTTTAAGAAC
GGCAAGGTGGTGAATCGCGCTCGAGGATTCGTGGTGCGGATCTTCGATGC
CATATGCAATTGCGCCAACAACAATGCGGCGGCGGCCACGACGCGTTTCA
AGCTGAGAAGCAACAGCGGCGGAGGGGGAGGCGGCGGAGGTGGTGGTGGC
GGAGCCAGCGGAAATGGCAAGCGTCAGCAGTCGCAGAATGAGCCGGAAAC
CCTAGTCCTGACCAAGAAGAAGCCCGCCGGCGAAGGCAAGAAAAAGAAGG
GAGTCAGCATGGCCGATGACGTTCAAGCCGGCGTTCGACTGATGGACGCA
AGCTTTCTAGACC
BO13870.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-PB | 534 | CG9368-RB | 1..531 | 17..547 | 2655 | 100 | Plus |
CG9368-PA | 549 | CG9368-RA | 239..546 | 240..547 | 1540 | 100 | Plus |
CG9368-PA | 549 | CG9368-RA | 1..223 | 17..239 | 1115 | 100 | Plus |
CG9368-PC | 336 | CG9368-RC | 1..219 | 21..239 | 1095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:09:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-RB | 1813 | CG9368-RB | 141..671 | 17..547 | 2655 | 100 | Plus |
CG9368-RA | 1828 | CG9368-RA | 141..686 | 17..547 | 2495 | 97.3 | Plus |
CG9368-RD | 2423 | CG9368-RD | 974..1281 | 240..547 | 1540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19602671..19602978 | 240..547 | 1540 | 100 | Plus |
3L | 28110227 | 3L | 19601773..19601977 | 17..221 | 1025 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:09:55 has no hits.
BO13870.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:18 Download gff for
BO13870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-PB | 1..534 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:39 Download gff for
BO13870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-PB | 1..534 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:53:13 Download gff for
BO13870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 133..682 | 9..559 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:12:38 Download gff for
BO13870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 133..682 | 9..559 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:12:38 Download gff for
BO13870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19601765..19601976 | 9..220 | 98 | -> | Plus |
3L | 19602042..19602060 | 221..239 | 100 | -> | Plus |
3L | 19602671..19602989 | 240..559 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:53:13 Download gff for
BO13870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19594865..19595076 | 9..220 | 98 | -> | Plus |
arm_3L | 19595142..19595160 | 221..239 | 100 | -> | Plus |
arm_3L | 19595771..19596089 | 240..559 | 98 | | Plus |
BO13870.complete Sequence
565 bp assembled on 2006-10-11
GenBank Submission: FJ632961
> BO13870.complete
GAAGTTATCAGTCGACATGCATGCCAGATTTGCGGATCCCGAGCCAGCGT
CTCCGGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATT
GAGGCCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCT
CGACGATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTG
AGAGCCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAATTTTAAGAAC
GGCAAGGTGGTGAATCGCGCTCGAGGATTCGTGGTGCGGATCTTCGATGC
CATATGCAATTGCGCCAACAACAATGCGGCGGCGGCCACGACGCGTTTCA
AGCTGAGAAGCAACAGCGGCGGAGGGGGAGGCGGCGGAGGTGGTGGTGGC
GGAGCCAGCGGAAATGGCAAGCGTCAGCAGTCGCAGAATGAGCCGGAAAC
CCTAGTCCTGACCAAGAAGAAGCCCGCCGGCGAAGGCAAGAAAAAGAAGG
GAGTCAGCATGGCCGATGACGTTCAAGCCGGCGTTCGACTGATGGACGCA
AGCTTTCTAGACCAT
BO13870.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-RB | 534 | CG9368-PB | 1..531 | 17..547 | 2655 | 100 | Plus |
CG9368-RA | 549 | CG9368-PA | 1..546 | 17..547 | 2470 | 97.3 | Plus |
CG9368-RD | 264 | CG9368-PD | 1..223 | 17..239 | 1115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-RB | 1813 | CG9368-RB | 141..671 | 17..547 | 2655 | 100 | Plus |
CG9368-RA | 1828 | CG9368-RA | 141..686 | 17..547 | 2470 | 97.3 | Plus |
CG9368-RD | 2423 | CG9368-RD | 974..1281 | 240..547 | 1540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19602671..19602978 | 240..547 | 1540 | 100 | Plus |
3L | 28110227 | 3L | 19601773..19601977 | 17..221 | 1025 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:08:45 has no hits.
BO13870.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:24:03 Download gff for
BO13870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 1..534 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:08 Download gff for
BO13870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 130..679 | 9..559 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:17 Download gff for
BO13870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 141..671 | 17..549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:24:03 Download gff for
BO13870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 130..679 | 9..559 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:45 Download gff for
BO13870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 141..671 | 17..549 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:45 Download gff for
BO13870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19601773..19601976 | 17..220 | 100 | -> | Plus |
3L | 19602042..19602060 | 221..239 | 100 | -> | Plus |
3L | 19602671..19602978 | 240..549 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:17 Download gff for
BO13870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19594873..19595076 | 17..220 | 100 | -> | Plus |
arm_3L | 19595142..19595160 | 221..239 | 100 | -> | Plus |
arm_3L | 19595771..19596078 | 240..549 | 99 | | Plus |
BO13870.pep Sequence
Translation from 16 to 565
> BO13870.pep
MHARFADPEPASPDSVDGIETESLEARIEAFKQNPQNMAALREALDDVLL
RAETEANRRAVESQKSQQGKEKRPNFKNGKVVNRARGFVVRIFDAICNCA
NNNAAAATTRFKLRSNSGGGGGGGGGGGGASGNGKRQQSQNEPETLVLTK
KKPAGEGKKKKGVSMADDVQAGVRLMDASFLDH
BO13870.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-PB | 177 | CG9368-PB | 1..177 | 1..177 | 904 | 100 | Plus |
CG9368-PA | 182 | CG9368-PA | 1..182 | 1..177 | 883 | 96.7 | Plus |
CG9368-PD | 87 | CG9368-PD | 1..75 | 1..75 | 370 | 98.7 | Plus |