Clone BO13870 Report

Search the DGRC for BO13870

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG9368-RB
Protein status:BO13870.pep: validated full length
Sequenced Size:565

Clone Sequence Records

BO13870.3prime Sequence

563 bp (562 high quality bases) assembled on 2006-05-08

> BO13870.3prime
ATGGTCTAGAAAGCTTGCGTCCATCAGTCGAACGCCGGCTTGAACGTCAT
CGGCCATGCTGACTCCCTTCTTTTTCTTGCCTTCGCCGGCGGGCTTCTTC
TTGGTCAGGACTAGGGTTTCCGGCTCATTCTGCGACTGCTGACGCTTGCC
ATTTCCGCTGGCTCCGCCACCACCACCTCCGCCGCCTCCCCCTCCGCCGC
TGTTGCTTCTCAGCTTGAAACGCGTCGTGGCCGCCGCCGCATTGTTGTTG
GCGCAATTGCATATGGCATCGAAGATCCGCACCACGAATCCTCGAGCGCG
ATTCACCACCTTGCCGTTCTTAAAATTCGGTCGTTTTTCCTTGCCCTGTT
GCGATTTCTGGCTCTCAACTGCCCGCCTGTTCGCCTCCGTCTCAGCCCGC
AGGAGCACATCGTCGAGCGCCTCCCGCAACGCGGCCATGTTCTGGGGATT
TTGCTTGAAGGCCTCAATCCGCGCCTCCAGTGACTCCGTTTCGATTCCAT
CAACGCTGTCCGGAGACGCTGGCTCGGGATCCGCAAATCTGGCATGCATG
TCGACTGATAACT

BO13870.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-PB 534 CG9368-RB 1..531 549..19 2655 100 Minus
CG9368-PA 549 CG9368-RA 239..546 326..19 1540 100 Minus
CG9368-PA 549 CG9368-RA 1..223 549..327 1115 100 Minus
CG9368-PC 336 CG9368-RC 1..219 545..327 1095 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-RB 1813 CG9368-RB 141..671 549..19 2655 100 Minus
CG9368-RA 1828 CG9368-RA 141..686 549..19 2495 97.3 Minus
CG9368-RD 2423 CG9368-RD 974..1281 326..19 1540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19602671..19602978 326..19 1540 100 Minus
3L 28110227 3L 19601773..19601977 549..345 1025 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:06:01 has no hits.

BO13870.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:17 Download gff for BO13870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-PB 1..534 15..549 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:38 Download gff for BO13870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-PB 1..534 15..549 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:58:58 Download gff for BO13870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 133..682 7..557 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:33 Download gff for BO13870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 133..682 7..557 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:33 Download gff for BO13870.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19601765..19601976 346..557 98 -> Minus
3L 19602042..19602060 327..345 100 -> Minus
3L 19602671..19602989 7..326 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:58:58 Download gff for BO13870.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19594865..19595076 346..557 98 -> Minus
arm_3L 19595142..19595160 327..345 100 -> Minus
arm_3L 19595771..19596089 7..326 98   Minus

BO13870.5prime Sequence

563 bp (562 high quality bases) assembled on 2006-05-08

> BO13870.5prime
GAAGTTATCAGTCGACATGCATGCCAGATTTGCGGATCCCGAGCCAGCGT
CTCCGGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATT
GAGGCCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCT
CGACGATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTG
AGAGCCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAATTTTAAGAAC
GGCAAGGTGGTGAATCGCGCTCGAGGATTCGTGGTGCGGATCTTCGATGC
CATATGCAATTGCGCCAACAACAATGCGGCGGCGGCCACGACGCGTTTCA
AGCTGAGAAGCAACAGCGGCGGAGGGGGAGGCGGCGGAGGTGGTGGTGGC
GGAGCCAGCGGAAATGGCAAGCGTCAGCAGTCGCAGAATGAGCCGGAAAC
CCTAGTCCTGACCAAGAAGAAGCCCGCCGGCGAAGGCAAGAAAAAGAAGG
GAGTCAGCATGGCCGATGACGTTCAAGCCGGCGTTCGACTGATGGACGCA
AGCTTTCTAGACC

BO13870.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-PB 534 CG9368-RB 1..531 17..547 2655 100 Plus
CG9368-PA 549 CG9368-RA 239..546 240..547 1540 100 Plus
CG9368-PA 549 CG9368-RA 1..223 17..239 1115 100 Plus
CG9368-PC 336 CG9368-RC 1..219 21..239 1095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-RB 1813 CG9368-RB 141..671 17..547 2655 100 Plus
CG9368-RA 1828 CG9368-RA 141..686 17..547 2495 97.3 Plus
CG9368-RD 2423 CG9368-RD 974..1281 240..547 1540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19602671..19602978 240..547 1540 100 Plus
3L 28110227 3L 19601773..19601977 17..221 1025 100 Plus
Blast to na_te.dros performed on 2015-02-02 09:09:55 has no hits.

BO13870.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:18 Download gff for BO13870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-PB 1..534 17..551 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:39 Download gff for BO13870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-PB 1..534 17..551 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:53:13 Download gff for BO13870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 133..682 9..559 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:12:38 Download gff for BO13870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 133..682 9..559 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:12:38 Download gff for BO13870.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19601765..19601976 9..220 98 -> Plus
3L 19602042..19602060 221..239 100 -> Plus
3L 19602671..19602989 240..559 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:53:13 Download gff for BO13870.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19594865..19595076 9..220 98 -> Plus
arm_3L 19595142..19595160 221..239 100 -> Plus
arm_3L 19595771..19596089 240..559 98   Plus

BO13870.complete Sequence

565 bp assembled on 2006-10-11

GenBank Submission: FJ632961

> BO13870.complete
GAAGTTATCAGTCGACATGCATGCCAGATTTGCGGATCCCGAGCCAGCGT
CTCCGGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATT
GAGGCCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCT
CGACGATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTG
AGAGCCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAATTTTAAGAAC
GGCAAGGTGGTGAATCGCGCTCGAGGATTCGTGGTGCGGATCTTCGATGC
CATATGCAATTGCGCCAACAACAATGCGGCGGCGGCCACGACGCGTTTCA
AGCTGAGAAGCAACAGCGGCGGAGGGGGAGGCGGCGGAGGTGGTGGTGGC
GGAGCCAGCGGAAATGGCAAGCGTCAGCAGTCGCAGAATGAGCCGGAAAC
CCTAGTCCTGACCAAGAAGAAGCCCGCCGGCGAAGGCAAGAAAAAGAAGG
GAGTCAGCATGGCCGATGACGTTCAAGCCGGCGTTCGACTGATGGACGCA
AGCTTTCTAGACCAT

BO13870.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-RB 534 CG9368-PB 1..531 17..547 2655 100 Plus
CG9368-RA 549 CG9368-PA 1..546 17..547 2470 97.3 Plus
CG9368-RD 264 CG9368-PD 1..223 17..239 1115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-RB 1813 CG9368-RB 141..671 17..547 2655 100 Plus
CG9368-RA 1828 CG9368-RA 141..686 17..547 2470 97.3 Plus
CG9368-RD 2423 CG9368-RD 974..1281 240..547 1540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19602671..19602978 240..547 1540 100 Plus
3L 28110227 3L 19601773..19601977 17..221 1025 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:08:45 has no hits.

BO13870.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:24:03 Download gff for BO13870.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 1..534 17..551 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:08 Download gff for BO13870.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 130..679 9..559 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:17 Download gff for BO13870.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 141..671 17..549 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:24:03 Download gff for BO13870.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 130..679 9..559 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:45 Download gff for BO13870.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 141..671 17..549 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:45 Download gff for BO13870.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19601773..19601976 17..220 100 -> Plus
3L 19602042..19602060 221..239 100 -> Plus
3L 19602671..19602978 240..549 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:17 Download gff for BO13870.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19594873..19595076 17..220 100 -> Plus
arm_3L 19595142..19595160 221..239 100 -> Plus
arm_3L 19595771..19596078 240..549 99   Plus

BO13870.pep Sequence

Translation from 16 to 565

> BO13870.pep
MHARFADPEPASPDSVDGIETESLEARIEAFKQNPQNMAALREALDDVLL
RAETEANRRAVESQKSQQGKEKRPNFKNGKVVNRARGFVVRIFDAICNCA
NNNAAAATTRFKLRSNSGGGGGGGGGGGGASGNGKRQQSQNEPETLVLTK
KKPAGEGKKKKGVSMADDVQAGVRLMDASFLDH

BO13870.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-PB 177 CG9368-PB 1..177 1..177 904 100 Plus
CG9368-PA 182 CG9368-PA 1..182 1..177 883 96.7 Plus
CG9368-PD 87 CG9368-PD 1..75 1..75 370 98.7 Plus