Clone Sequence Records
BO13871.3prime Sequence
542 bp (541 high quality bases) assembled on 2006-05-08
> BO13871.3prime
ATGGTCTAGAAAGCTTGCCTCCTTTGGCTTTTCCGTGGTCCAGTTCTTGG
GAGGATCGGCCATGATGGTCCAGTCGTTTCCGGCAATGTTCAGACCACCA
TACTGCTTGATCGGTGTGTTTGGGAAGAACTCCCAGCCCTGTTCAATGGA
CATCTTCTTGATGACACCAGCGATGCCCAGGAAGAGGCCGGCGCACAGAC
CAGCTACGTGGTTGTGTTTCCAGGCTCCAAAGACGCCGCCAGCCGCAAAA
CCGCCGATCAGGTAGTTGATTTTATCGTCCTTGCCGCGCGCATTTGTGGC
CACCAGGGTGGTCAGAGTGAACGCCGTGGCCATGCCCATCAGCGGACCCG
TGTTGTAGGCGAAACGGCCCAGTGTGGGCAGATATCCTTGCGGCTTGGAG
AGCGTCAGGACGTCGAACATGGACCAGGCCACGCCGGCGGATACCGCGTA
CTTGTTGGTGGCCACGATCTTGCCAAAGGCATCCTCGCCATCGGGATGGT
CGTAGTATTTCGAACGGAGCAGCGACATGTCGACTGATAACT
BO13871.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9350-PA | 513 | CG9350-RA | 1..510 | 528..19 | 2550 | 100 | Minus |
CG9350-PB | 513 | CG9350-RB | 1..510 | 528..19 | 2550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9350-RA | 712 | CG9350-RA | 89..599 | 529..19 | 2555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21025346..21025603 | 529..272 | 1290 | 100 | Minus |
2R | 25286936 | 2R | 21025815..21025973 | 177..19 | 795 | 100 | Minus |
2R | 25286936 | 2R | 21025661..21025756 | 271..176 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:28:54 has no hits.
BO13871.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:19 Download gff for
BO13871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-PA | 1..513 | 15..528 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:41 Download gff for
BO13871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-PB | 1..513 | 15..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:42 Download gff for
BO13871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 81..604 | 14..536 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:21:39 Download gff for
BO13871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 81..604 | 14..536 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:21:39 Download gff for
BO13871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21025341..21025603 | 272..536 | 98 | -> | Minus |
2R | 21025661..21025755 | 177..271 | 100 | -> | Minus |
2R | 21025816..21025978 | 14..176 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:42 Download gff for
BO13871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16912846..16913108 | 272..536 | 98 | -> | Minus |
arm_2R | 16913166..16913260 | 177..271 | 100 | -> | Minus |
arm_2R | 16913321..16913483 | 14..176 | 98 | | Minus |
BO13871.5prime Sequence
542 bp (541 high quality bases) assembled on 2006-05-08
> BO13871.5prime
GAAGTTATCAGTCGACATGTCGCTGCTCCGTTCGAAATACTACGACCATC
CCGATGGCGAGGATGCCTTTGGCAAGATCGTGGCCACCAACAAGTACGCG
GTATCCGCCGGCGTGGCCTGGTCCATGTTCGACGTCCTGACGCTCTCCAA
GCCGCAAGGATATCTGCCCACACTGGGCCGTTTCGCCTACAACACGGGTC
CGCTGATGGGCATGGCCACGGCGTTCACTCTGACCACCCTGGTGGCCACA
AATGCGCGCGGCAAGGACGATAAAATCAACTACCTGATCGGCGGTTTTGC
GGCTGGCGGCGTCTTTGGAGCCTGGAAACACAACCACGTAGCTGGTCTGT
GCGCCGGCCTCTTCCTGGGCATCGCTGGTGTCATCAAGAAGATGTCCATT
GAACAGGGCTGGGAGTTCTTCCCAAACACACCGATCAAGCAGTATGGTGG
TCTGAACATTGCCGGAAACGACTGGACCATCATGGCCGATCCTCCCAAGA
ACTGGACCACGGAAAAGCCAAAGGAGGCAAGCTTTCTAGACC
BO13871.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9350-PA | 513 | CG9350-RA | 1..510 | 17..526 | 2550 | 100 | Plus |
CG9350-PB | 513 | CG9350-RB | 1..510 | 17..526 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9350-RA | 712 | CG9350-RA | 89..599 | 16..526 | 2555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21025346..21025603 | 16..273 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 21025815..21025973 | 368..526 | 795 | 100 | Plus |
2R | 25286936 | 2R | 21025661..21025756 | 274..369 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:55:56 has no hits.
BO13871.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:20 Download gff for
BO13871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-PA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:42 Download gff for
BO13871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-PB | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:08:45 Download gff for
BO13871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 81..604 | 9..531 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:39 Download gff for
BO13871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 81..604 | 9..531 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:39 Download gff for
BO13871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21025341..21025603 | 9..273 | 98 | -> | Plus |
2R | 21025661..21025755 | 274..368 | 100 | -> | Plus |
2R | 21025816..21025978 | 369..531 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:08:45 Download gff for
BO13871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16912846..16913108 | 9..273 | 98 | -> | Plus |
arm_2R | 16913166..16913260 | 274..368 | 100 | -> | Plus |
arm_2R | 16913321..16913483 | 369..531 | 98 | | Plus |
BO13871.complete Sequence
544 bp assembled on 2006-10-11
GenBank Submission: FJ632962
> BO13871.complete
GAAGTTATCAGTCGACATGTCGCTGCTCCGTTCGAAATACTACGACCATC
CCGATGGCGAGGATGCCTTTGGCAAGATCGTGGCCACCAACAAGTACGCG
GTATCCGCCGGCGTGGCCTGGTCCATGTTCGACGTCCTGACGCTCTCCAA
GCCGCAAGGATATCTGCCCACACTGGGCCGTTTCGCCTACAACACGGGTC
CGCTGATGGGCATGGCCACGGCGTTCACTCTGACCACCCTGGTGGCCACA
AATGCGCGCGGCAAGGACGATAAAATCAACTACCTGATCGGCGGTTTTGC
GGCTGGCGGCGTCTTTGGAGCCTGGAAACACAACCACGTAGCTGGTCTGT
GCGCCGGCCTCTTCCTGGGCATCGCTGGTGTCATCAAGAAGATGTCCATT
GAACAGGGCTGGGAGTTCTTCCCAAACACACCGATCAAGCAGTATGGTGG
TCTGAACATTGCCGGAAACGACTGGACCATCATGGCCGATCCTCCCAAGA
ACTGGACCACGGAAAAGCCAAAGGAGGCAAGCTTTCTAGACCAT
BO13871.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9350-RA | 513 | CG9350-PA | 1..510 | 17..526 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9350-RA | 712 | CG9350-RA | 89..599 | 16..526 | 2555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21025346..21025603 | 16..273 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 21025815..21025973 | 368..526 | 795 | 100 | Plus |
2R | 25286936 | 2R | 21025661..21025756 | 274..369 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:10:08 has no hits.
BO13871.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:36 Download gff for
BO13871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:37 Download gff for
BO13871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 79..602 | 9..531 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:02 Download gff for
BO13871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 90..599 | 17..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:36 Download gff for
BO13871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 79..602 | 9..531 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:18 Download gff for
BO13871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 90..599 | 17..528 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:18 Download gff for
BO13871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21025347..21025603 | 17..273 | 100 | -> | Plus |
2R | 21025661..21025755 | 274..368 | 100 | -> | Plus |
2R | 21025816..21025973 | 369..528 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:02 Download gff for
BO13871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16912852..16913108 | 17..273 | 100 | -> | Plus |
arm_2R | 16913166..16913260 | 274..368 | 100 | -> | Plus |
arm_2R | 16913321..16913478 | 369..528 | 98 | | Plus |
BO13871.pep Sequence
Translation from 16 to 544
> BO13871.pep
MSLLRSKYYDHPDGEDAFGKIVATNKYAVSAGVAWSMFDVLTLSKPQGYL
PTLGRFAYNTGPLMGMATAFTLTTLVATNARGKDDKINYLIGGFAAGGVF
GAWKHNHVAGLCAGLFLGIAGVIKKMSIEQGWEFFPNTPIKQYGGLNIAG
NDWTIMADPPKNWTTEKPKEASFLDH
BO13871.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9350-PA | 170 | CG9350-PA | 1..170 | 1..170 | 917 | 100 | Plus |