Clone BO13871 Report

Search the DGRC for BO13871

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG9350-RA
Protein status:BO13871.pep: validated full length
Sequenced Size:544

Clone Sequence Records

BO13871.3prime Sequence

542 bp (541 high quality bases) assembled on 2006-05-08

> BO13871.3prime
ATGGTCTAGAAAGCTTGCCTCCTTTGGCTTTTCCGTGGTCCAGTTCTTGG
GAGGATCGGCCATGATGGTCCAGTCGTTTCCGGCAATGTTCAGACCACCA
TACTGCTTGATCGGTGTGTTTGGGAAGAACTCCCAGCCCTGTTCAATGGA
CATCTTCTTGATGACACCAGCGATGCCCAGGAAGAGGCCGGCGCACAGAC
CAGCTACGTGGTTGTGTTTCCAGGCTCCAAAGACGCCGCCAGCCGCAAAA
CCGCCGATCAGGTAGTTGATTTTATCGTCCTTGCCGCGCGCATTTGTGGC
CACCAGGGTGGTCAGAGTGAACGCCGTGGCCATGCCCATCAGCGGACCCG
TGTTGTAGGCGAAACGGCCCAGTGTGGGCAGATATCCTTGCGGCTTGGAG
AGCGTCAGGACGTCGAACATGGACCAGGCCACGCCGGCGGATACCGCGTA
CTTGTTGGTGGCCACGATCTTGCCAAAGGCATCCTCGCCATCGGGATGGT
CGTAGTATTTCGAACGGAGCAGCGACATGTCGACTGATAACT

BO13871.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9350-PA 513 CG9350-RA 1..510 528..19 2550 100 Minus
CG9350-PB 513 CG9350-RB 1..510 528..19 2550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9350-RA 712 CG9350-RA 89..599 529..19 2555 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21025346..21025603 529..272 1290 100 Minus
2R 25286936 2R 21025815..21025973 177..19 795 100 Minus
2R 25286936 2R 21025661..21025756 271..176 480 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:28:54 has no hits.

BO13871.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:19 Download gff for BO13871.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9350-PA 1..513 15..528 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:41 Download gff for BO13871.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9350-PB 1..513 15..528 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:42 Download gff for BO13871.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 81..604 14..536 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:21:39 Download gff for BO13871.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 81..604 14..536 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:21:39 Download gff for BO13871.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21025341..21025603 272..536 98 -> Minus
2R 21025661..21025755 177..271 100 -> Minus
2R 21025816..21025978 14..176 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:42 Download gff for BO13871.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16912846..16913108 272..536 98 -> Minus
arm_2R 16913166..16913260 177..271 100 -> Minus
arm_2R 16913321..16913483 14..176 98   Minus

BO13871.5prime Sequence

542 bp (541 high quality bases) assembled on 2006-05-08

> BO13871.5prime
GAAGTTATCAGTCGACATGTCGCTGCTCCGTTCGAAATACTACGACCATC
CCGATGGCGAGGATGCCTTTGGCAAGATCGTGGCCACCAACAAGTACGCG
GTATCCGCCGGCGTGGCCTGGTCCATGTTCGACGTCCTGACGCTCTCCAA
GCCGCAAGGATATCTGCCCACACTGGGCCGTTTCGCCTACAACACGGGTC
CGCTGATGGGCATGGCCACGGCGTTCACTCTGACCACCCTGGTGGCCACA
AATGCGCGCGGCAAGGACGATAAAATCAACTACCTGATCGGCGGTTTTGC
GGCTGGCGGCGTCTTTGGAGCCTGGAAACACAACCACGTAGCTGGTCTGT
GCGCCGGCCTCTTCCTGGGCATCGCTGGTGTCATCAAGAAGATGTCCATT
GAACAGGGCTGGGAGTTCTTCCCAAACACACCGATCAAGCAGTATGGTGG
TCTGAACATTGCCGGAAACGACTGGACCATCATGGCCGATCCTCCCAAGA
ACTGGACCACGGAAAAGCCAAAGGAGGCAAGCTTTCTAGACC

BO13871.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9350-PA 513 CG9350-RA 1..510 17..526 2550 100 Plus
CG9350-PB 513 CG9350-RB 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9350-RA 712 CG9350-RA 89..599 16..526 2555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21025346..21025603 16..273 1290 100 Plus
2R 25286936 2R 21025815..21025973 368..526 795 100 Plus
2R 25286936 2R 21025661..21025756 274..369 480 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:55:56 has no hits.

BO13871.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:20 Download gff for BO13871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9350-PA 1..513 17..530 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:42 Download gff for BO13871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9350-PB 1..513 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:08:45 Download gff for BO13871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 81..604 9..531 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:39 Download gff for BO13871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 81..604 9..531 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:39 Download gff for BO13871.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21025341..21025603 9..273 98 -> Plus
2R 21025661..21025755 274..368 100 -> Plus
2R 21025816..21025978 369..531 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:08:45 Download gff for BO13871.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16912846..16913108 9..273 98 -> Plus
arm_2R 16913166..16913260 274..368 100 -> Plus
arm_2R 16913321..16913483 369..531 98   Plus

BO13871.complete Sequence

544 bp assembled on 2006-10-11

GenBank Submission: FJ632962

> BO13871.complete
GAAGTTATCAGTCGACATGTCGCTGCTCCGTTCGAAATACTACGACCATC
CCGATGGCGAGGATGCCTTTGGCAAGATCGTGGCCACCAACAAGTACGCG
GTATCCGCCGGCGTGGCCTGGTCCATGTTCGACGTCCTGACGCTCTCCAA
GCCGCAAGGATATCTGCCCACACTGGGCCGTTTCGCCTACAACACGGGTC
CGCTGATGGGCATGGCCACGGCGTTCACTCTGACCACCCTGGTGGCCACA
AATGCGCGCGGCAAGGACGATAAAATCAACTACCTGATCGGCGGTTTTGC
GGCTGGCGGCGTCTTTGGAGCCTGGAAACACAACCACGTAGCTGGTCTGT
GCGCCGGCCTCTTCCTGGGCATCGCTGGTGTCATCAAGAAGATGTCCATT
GAACAGGGCTGGGAGTTCTTCCCAAACACACCGATCAAGCAGTATGGTGG
TCTGAACATTGCCGGAAACGACTGGACCATCATGGCCGATCCTCCCAAGA
ACTGGACCACGGAAAAGCCAAAGGAGGCAAGCTTTCTAGACCAT

BO13871.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9350-RA 513 CG9350-PA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9350-RA 712 CG9350-RA 89..599 16..526 2555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21025346..21025603 16..273 1290 100 Plus
2R 25286936 2R 21025815..21025973 368..526 795 100 Plus
2R 25286936 2R 21025661..21025756 274..369 480 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:10:08 has no hits.

BO13871.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:36 Download gff for BO13871.complete
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 1..513 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:37 Download gff for BO13871.complete
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 79..602 9..531 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:02 Download gff for BO13871.complete
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 90..599 17..528 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:36 Download gff for BO13871.complete
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 79..602 9..531 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:18 Download gff for BO13871.complete
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 90..599 17..528 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:18 Download gff for BO13871.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21025347..21025603 17..273 100 -> Plus
2R 21025661..21025755 274..368 100 -> Plus
2R 21025816..21025973 369..528 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:02 Download gff for BO13871.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16912852..16913108 17..273 100 -> Plus
arm_2R 16913166..16913260 274..368 100 -> Plus
arm_2R 16913321..16913478 369..528 98   Plus

BO13871.pep Sequence

Translation from 16 to 544

> BO13871.pep
MSLLRSKYYDHPDGEDAFGKIVATNKYAVSAGVAWSMFDVLTLSKPQGYL
PTLGRFAYNTGPLMGMATAFTLTTLVATNARGKDDKINYLIGGFAAGGVF
GAWKHNHVAGLCAGLFLGIAGVIKKMSIEQGWEFFPNTPIKQYGGLNIAG
NDWTIMADPPKNWTTEKPKEASFLDH

BO13871.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9350-PA 170 CG9350-PA 1..170 1..170 917 100 Plus