Clone Sequence Records
BO13874.3prime Sequence
395 bp (394 high quality bases) assembled on 2006-05-08
> BO13874.3prime
ATGGTCTAGAAAGCTTGCGTTCTTGTAGGTGCCCACGTAGGCTCCACAGC
TGGTGCAGGTGTGTTTGGCCGACTGGCAGGAGTCGGTGCAGTACGGAATG
CAGCAGCAGCAAATGCCCCCCAGCATGCAGATGAGTAGGGCCAACAGGTG
GGTCTTGGTGCTGGGCTCGAACTCCACCTTCGTCTCCCTGCGGACGCCGC
AGCTCGGACAAGTGGCAACGGATGGACATTGGCCCAGGACATTGGGTGGA
GCCTGCAATATCACTCCCTGTCCCTGATGGAGCTGAGGATAGACCTGCTG
CGGTGCGCTATCATAACTGGGCGGTGCCTGGAAACCCGGAGCCTGAGGCT
GCATATTCTCGTATTGAAAGTTCTTCTCCATGTCGACTGATAACT
BO13874.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4250-PA | 366 | CG4250-RA | 1..363 | 381..19 | 1815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:20:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4250-RA | 616 | CG4250-RA | 54..416 | 381..19 | 1815 | 100 | Minus |
CG4250-RB | 655 | CG4250-RB | 222..455 | 252..19 | 1170 | 100 | Minus |
CG4250-RB | 655 | CG4250-RB | 54..183 | 381..252 | 650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22663988..22664122 | 252..118 | 675 | 100 | Minus |
2R | 25286936 | 2R | 22663745..22663874 | 381..252 | 650 | 100 | Minus |
2R | 25286936 | 2R | 22664174..22664274 | 119..19 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:20:44 has no hits.
BO13874.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:22 Download gff for
BO13874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4250-PA | 1..366 | 18..381 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:43 Download gff for
BO13874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4250-PA | 1..366 | 18..381 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:52:32 Download gff for
BO13874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4250-RA | 45..416 | 19..391 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:50:45 Download gff for
BO13874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4250-RA | 45..416 | 19..391 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:50:45 Download gff for
BO13874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22663736..22663874 | 252..391 | 97 | -> | Minus |
2R | 22663989..22664121 | 119..251 | 100 | -> | Minus |
2R | 22664175..22664274 | 19..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:52:32 Download gff for
BO13874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18551241..18551379 | 252..391 | 97 | -> | Minus |
arm_2R | 18551494..18551626 | 119..251 | 100 | -> | Minus |
arm_2R | 18551680..18551779 | 19..118 | 100 | | Minus |
BO13874.5prime Sequence
395 bp (394 high quality bases) assembled on 2006-05-08
> BO13874.5prime
GAAGTTATCAGTCGACATGGAGAAGAACTTTCAATACGAGAATATGCAGC
CTCAGGCTCCGGGTTTCCAGGCACCGCCCAGTTATGATAGCGCACCGCAG
CAGGTCTATCCTCAGCTCCATCAGGGACAGGGAGTGATATTGCAGGCTCC
ACCCAATGTCCTGGGCCAATGTCCATCCGTTGCCACTTGTCCGAGCTGCG
GCGTCCGCAGGGAGACGAAGGTGGAGTTCGAGCCCAGCACCAAGACCCAC
CTGTTGGCCCTACTCATCTGCATGCTGGGGGGCATTTGCTGCTGCTGCAT
TCCGTACTGCACCGACTCCTGCCAGTCGGCCAAACACACCTGCACCAGCT
GTGGAGCCTACGTGGGCACCTACAAGAACGCAAGCTTTCTAGACC
BO13874.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4250-PA | 366 | CG4250-RA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:26:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4250-RA | 616 | CG4250-RA | 54..416 | 17..379 | 1815 | 100 | Plus |
CG4250-RB | 655 | CG4250-RB | 222..455 | 146..379 | 1170 | 100 | Plus |
CG4250-RB | 655 | CG4250-RB | 54..183 | 17..146 | 650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:26:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22663988..22664122 | 146..280 | 675 | 100 | Plus |
2R | 25286936 | 2R | 22663745..22663874 | 17..146 | 650 | 100 | Plus |
2R | 25286936 | 2R | 22664174..22664274 | 279..379 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:26:17 has no hits.
BO13874.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:23 Download gff for
BO13874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4250-PA | 1..366 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:45 Download gff for
BO13874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4250-PA | 1..366 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:57:49 Download gff for
BO13874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4250-RA | 45..416 | 7..379 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:40 Download gff for
BO13874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4250-RA | 45..416 | 7..379 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:40 Download gff for
BO13874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22663736..22663874 | 7..146 | 97 | -> | Plus |
2R | 22663989..22664121 | 147..279 | 100 | -> | Plus |
2R | 22664175..22664274 | 280..379 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:57:49 Download gff for
BO13874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18551241..18551379 | 7..146 | 97 | -> | Plus |
arm_2R | 18551494..18551626 | 147..279 | 100 | -> | Plus |
arm_2R | 18551680..18551779 | 280..379 | 100 | | Plus |
BO13874.complete Sequence
397 bp assembled on 2006-10-11
GenBank Submission: FJ632963
> BO13874.complete
GAAGTTATCAGTCGACATGGAGAAGAACTTTCAATACGAGAATATGCAGC
CTCAGGCTCCGGGTTTCCAGGCACCGCCCAGTTATGATAGCGCACCGCAG
CAGGTCTATCCTCAGCTCCATCAGGGACAGGGAGTGATATTGCAGGCTCC
ACCCAATGTCCTGGGCCAATGTCCATCCGTTGCCACTTGTCCGAGCTGCG
GCGTCCGCAGGGAGACGAAGGTGGAGTTCGAGCCCAGCACCAAGACCCAC
CTGTTGGCCCTACTCATCTGCATGCTGGGGGGCATTTGCTGCTGCTGCAT
TCCGTACTGCACCGACTCCTGCCAGTCGGCCAAACACACCTGCACCAGCT
GTGGAGCCTACGTGGGCACCTACAAGAACGCAAGCTTTCTAGACCAT
BO13874.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4250-RA | 366 | CG4250-PA | 1..363 | 17..379 | 1815 | 100 | Plus |
CG4250-RB | 405 | CG4250-PB | 169..402 | 146..379 | 1170 | 100 | Plus |
CG4250-RB | 405 | CG4250-PB | 1..130 | 17..146 | 650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4250-RA | 616 | CG4250-RA | 54..416 | 17..379 | 1815 | 100 | Plus |
CG4250-RB | 655 | CG4250-RB | 222..455 | 146..379 | 1170 | 100 | Plus |
CG4250-RB | 655 | CG4250-RB | 54..183 | 17..146 | 650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22663988..22664122 | 146..280 | 675 | 100 | Plus |
2R | 25286936 | 2R | 22663745..22663874 | 17..146 | 650 | 100 | Plus |
2R | 25286936 | 2R | 22664174..22664274 | 279..379 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:54:35 has no hits.
BO13874.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:37 Download gff for
BO13874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4250-RA | 1..366 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:39 Download gff for
BO13874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4250-RA | 49..420 | 7..379 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:39 Download gff for
BO13874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4250-RA | 54..416 | 17..381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:37 Download gff for
BO13874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4250-RA | 49..420 | 7..379 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:31 Download gff for
BO13874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4250-RA | 54..416 | 17..381 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:31 Download gff for
BO13874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22664175..22664274 | 280..381 | 98 | | Plus |
2R | 22663745..22663874 | 17..146 | 100 | -> | Plus |
2R | 22663989..22664121 | 147..279 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:39 Download gff for
BO13874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18551250..18551379 | 17..146 | 100 | -> | Plus |
arm_2R | 18551494..18551626 | 147..279 | 100 | -> | Plus |
arm_2R | 18551680..18551779 | 280..381 | 98 | | Plus |
BO13874.pep Sequence
Translation from 16 to 397
> BO13874.pep
MEKNFQYENMQPQAPGFQAPPSYDSAPQQVYPQLHQGQGVILQAPPNVLG
QCPSVATCPSCGVRRETKVEFEPSTKTHLLALLICMLGGICCCCIPYCTD
SCQSAKHTCTSCGAYVGTYKNASFLDH
BO13874.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4250-PA | 121 | CG4250-PA | 1..121 | 1..121 | 681 | 100 | Plus |
CG4250-PB | 134 | CG4250-PB | 1..134 | 1..121 | 657 | 90.3 | Plus |
CG30273-PB | 128 | CG30273-PB | 2..127 | 6..121 | 238 | 38.1 | Plus |
CG30269-PB | 144 | CG30269-PB | 32..141 | 19..119 | 218 | 37.3 | Plus |
CG30269-PA | 144 | CG30269-PA | 32..141 | 19..119 | 218 | 37.3 | Plus |