Clone BO13874 Report

Search the DGRC for BO13874

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG4250-RA
Protein status:BO13874.pep: validated full length
Sequenced Size:397

Clone Sequence Records

BO13874.3prime Sequence

395 bp (394 high quality bases) assembled on 2006-05-08

> BO13874.3prime
ATGGTCTAGAAAGCTTGCGTTCTTGTAGGTGCCCACGTAGGCTCCACAGC
TGGTGCAGGTGTGTTTGGCCGACTGGCAGGAGTCGGTGCAGTACGGAATG
CAGCAGCAGCAAATGCCCCCCAGCATGCAGATGAGTAGGGCCAACAGGTG
GGTCTTGGTGCTGGGCTCGAACTCCACCTTCGTCTCCCTGCGGACGCCGC
AGCTCGGACAAGTGGCAACGGATGGACATTGGCCCAGGACATTGGGTGGA
GCCTGCAATATCACTCCCTGTCCCTGATGGAGCTGAGGATAGACCTGCTG
CGGTGCGCTATCATAACTGGGCGGTGCCTGGAAACCCGGAGCCTGAGGCT
GCATATTCTCGTATTGAAAGTTCTTCTCCATGTCGACTGATAACT

BO13874.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4250-PA 366 CG4250-RA 1..363 381..19 1815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4250-RA 616 CG4250-RA 54..416 381..19 1815 100 Minus
CG4250-RB 655 CG4250-RB 222..455 252..19 1170 100 Minus
CG4250-RB 655 CG4250-RB 54..183 381..252 650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22663988..22664122 252..118 675 100 Minus
2R 25286936 2R 22663745..22663874 381..252 650 100 Minus
2R 25286936 2R 22664174..22664274 119..19 505 100 Minus
Blast to na_te.dros performed on 2015-02-13 09:20:44 has no hits.

BO13874.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:22 Download gff for BO13874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4250-PA 1..366 18..381 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:43 Download gff for BO13874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4250-PA 1..366 18..381 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:52:32 Download gff for BO13874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4250-RA 45..416 19..391 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:50:45 Download gff for BO13874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4250-RA 45..416 19..391 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:50:45 Download gff for BO13874.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22663736..22663874 252..391 97 -> Minus
2R 22663989..22664121 119..251 100 -> Minus
2R 22664175..22664274 19..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:52:32 Download gff for BO13874.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18551241..18551379 252..391 97 -> Minus
arm_2R 18551494..18551626 119..251 100 -> Minus
arm_2R 18551680..18551779 19..118 100   Minus

BO13874.5prime Sequence

395 bp (394 high quality bases) assembled on 2006-05-08

> BO13874.5prime
GAAGTTATCAGTCGACATGGAGAAGAACTTTCAATACGAGAATATGCAGC
CTCAGGCTCCGGGTTTCCAGGCACCGCCCAGTTATGATAGCGCACCGCAG
CAGGTCTATCCTCAGCTCCATCAGGGACAGGGAGTGATATTGCAGGCTCC
ACCCAATGTCCTGGGCCAATGTCCATCCGTTGCCACTTGTCCGAGCTGCG
GCGTCCGCAGGGAGACGAAGGTGGAGTTCGAGCCCAGCACCAAGACCCAC
CTGTTGGCCCTACTCATCTGCATGCTGGGGGGCATTTGCTGCTGCTGCAT
TCCGTACTGCACCGACTCCTGCCAGTCGGCCAAACACACCTGCACCAGCT
GTGGAGCCTACGTGGGCACCTACAAGAACGCAAGCTTTCTAGACC

BO13874.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4250-PA 366 CG4250-RA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4250-RA 616 CG4250-RA 54..416 17..379 1815 100 Plus
CG4250-RB 655 CG4250-RB 222..455 146..379 1170 100 Plus
CG4250-RB 655 CG4250-RB 54..183 17..146 650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22663988..22664122 146..280 675 100 Plus
2R 25286936 2R 22663745..22663874 17..146 650 100 Plus
2R 25286936 2R 22664174..22664274 279..379 505 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:26:17 has no hits.

BO13874.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:23 Download gff for BO13874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4250-PA 1..366 17..380 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:45 Download gff for BO13874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4250-PA 1..366 17..380 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:57:49 Download gff for BO13874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4250-RA 45..416 7..379 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:40 Download gff for BO13874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4250-RA 45..416 7..379 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:40 Download gff for BO13874.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22663736..22663874 7..146 97 -> Plus
2R 22663989..22664121 147..279 100 -> Plus
2R 22664175..22664274 280..379 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:57:49 Download gff for BO13874.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18551241..18551379 7..146 97 -> Plus
arm_2R 18551494..18551626 147..279 100 -> Plus
arm_2R 18551680..18551779 280..379 100   Plus

BO13874.complete Sequence

397 bp assembled on 2006-10-11

GenBank Submission: FJ632963

> BO13874.complete
GAAGTTATCAGTCGACATGGAGAAGAACTTTCAATACGAGAATATGCAGC
CTCAGGCTCCGGGTTTCCAGGCACCGCCCAGTTATGATAGCGCACCGCAG
CAGGTCTATCCTCAGCTCCATCAGGGACAGGGAGTGATATTGCAGGCTCC
ACCCAATGTCCTGGGCCAATGTCCATCCGTTGCCACTTGTCCGAGCTGCG
GCGTCCGCAGGGAGACGAAGGTGGAGTTCGAGCCCAGCACCAAGACCCAC
CTGTTGGCCCTACTCATCTGCATGCTGGGGGGCATTTGCTGCTGCTGCAT
TCCGTACTGCACCGACTCCTGCCAGTCGGCCAAACACACCTGCACCAGCT
GTGGAGCCTACGTGGGCACCTACAAGAACGCAAGCTTTCTAGACCAT

BO13874.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4250-RA 366 CG4250-PA 1..363 17..379 1815 100 Plus
CG4250-RB 405 CG4250-PB 169..402 146..379 1170 100 Plus
CG4250-RB 405 CG4250-PB 1..130 17..146 650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4250-RA 616 CG4250-RA 54..416 17..379 1815 100 Plus
CG4250-RB 655 CG4250-RB 222..455 146..379 1170 100 Plus
CG4250-RB 655 CG4250-RB 54..183 17..146 650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22663988..22664122 146..280 675 100 Plus
2R 25286936 2R 22663745..22663874 17..146 650 100 Plus
2R 25286936 2R 22664174..22664274 279..379 505 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:54:35 has no hits.

BO13874.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:37 Download gff for BO13874.complete
Subject Subject Range Query Range Percent Splice Strand
CG4250-RA 1..366 17..380 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:39 Download gff for BO13874.complete
Subject Subject Range Query Range Percent Splice Strand
CG4250-RA 49..420 7..379 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:39 Download gff for BO13874.complete
Subject Subject Range Query Range Percent Splice Strand
CG4250-RA 54..416 17..381 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:37 Download gff for BO13874.complete
Subject Subject Range Query Range Percent Splice Strand
CG4250-RA 49..420 7..379 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:31 Download gff for BO13874.complete
Subject Subject Range Query Range Percent Splice Strand
CG4250-RA 54..416 17..381 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:31 Download gff for BO13874.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22664175..22664274 280..381 98   Plus
2R 22663745..22663874 17..146 100 -> Plus
2R 22663989..22664121 147..279 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:39 Download gff for BO13874.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18551250..18551379 17..146 100 -> Plus
arm_2R 18551494..18551626 147..279 100 -> Plus
arm_2R 18551680..18551779 280..381 98   Plus

BO13874.pep Sequence

Translation from 16 to 397

> BO13874.pep
MEKNFQYENMQPQAPGFQAPPSYDSAPQQVYPQLHQGQGVILQAPPNVLG
QCPSVATCPSCGVRRETKVEFEPSTKTHLLALLICMLGGICCCCIPYCTD
SCQSAKHTCTSCGAYVGTYKNASFLDH

BO13874.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4250-PA 121 CG4250-PA 1..121 1..121 681 100 Plus
CG4250-PB 134 CG4250-PB 1..134 1..121 657 90.3 Plus
CG30273-PB 128 CG30273-PB 2..127 6..121 238 38.1 Plus
CG30269-PB 144 CG30269-PB 32..141 19..119 218 37.3 Plus
CG30269-PA 144 CG30269-PA 32..141 19..119 218 37.3 Plus