Clone Sequence Records
BO13876.3prime Sequence
751 bp (728 high quality bases) assembled on 2006-05-08
> BO13876.3prime
ATGGTCTAGAAAGCTTGCCATTTCGCATGGTGTACCCTTGATGAGATCGC
GGTTCTGGCCCATCAAAATACGATAGTTGACGGCCGAGGGATCGAGTTCC
TTGTACAAATATGTCGGCATCTTGTCGGACAGCACCCAAATAGTGCCTTC
ATTGTCGATTTTCATGTCATTTGGAAAGACCAGAGTGTGCGAATCGGAAT
CGATTAGCCCCTGGGTGTCCGGAGTGTATGGACGCTTGATGTTCCAACAA
GCAATGGCGTCTTTGTTCACCTGCGTATAGAAGATGACGCCGGTCTCGGG
GTCAAAGACCTCGGCGGTGGACTGGCCATTCATGCCACGGTCACCAACGT
ATTTAAAATCGTAATACGAATCGCCAGCGGTCACGTGTGATTCGTTTTGC
AGCACGCGGTTCGAAACCTTGAACTCCTTGGTACTGGCCAGGGCATGGAA
ATAAATGTCCTTGGAGTGATCTGGATTCATTGGGCCCACGGCCAGCCCAA
AAACGCCATCCGTCCACTGGAAGTTCACGCCGCCCACATTGAAATCACCA
TGCAGAGGATCGAAGTGGAAGAAGTTGTGCTTGACGCGGTAGGATTTGTC
GTTCCTCAGGGAGTACACAATCACACCGTAGGCACCCAAATCCGGAATGT
AAGCAAAGGCATCTTGGCACTCCGAGCGGTCCGCATCCACAACAATATTC
GCAAAGAACGAGTCCTCTTTGGTCTGATCAGGCGGAATGGTGAAACGGCG
C
BO13876.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4182-PA | 1317 | yellow-c-RA | 582..1314 | 751..19 | 3615 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-c-RB | 1600 | CG4182-RB | 752..1484 | 751..19 | 3635 | 99.7 | Minus |
yellow-c-RA | 1522 | CG4182-RA | 674..1406 | 751..19 | 3635 | 99.7 | Minus |
CIAPIN1-RA | 2358 | CG4180-RA | 980..1654 | 19..693 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15037051..15037725 | 693..19 | 3375 | 100 | Minus |
2L | 23513712 | 2L | 15036934..15036993 | 751..692 | 270 | 96.7 | Minus |
Blast to na_te.dros performed 2015-02-10 14:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TAHRE | 10463 | TAHRE OSV 10463bp | 5083..5135 | 188..137 | 109 | 69.8 | Minus |
BO13876.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:27 Download gff for
BO13876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4182-PA | 582..1317 | 16..751 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:49 Download gff for
BO13876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4182-PA | 582..1317 | 16..751 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:50:52 Download gff for
BO13876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-c-RA | 674..1406 | 19..751 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:18 Download gff for
BO13876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-c-RA | 674..1406 | 19..751 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:18 Download gff for
BO13876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15036934..15036991 | 694..751 | 96 | -> | Minus |
2L | 15037051..15037725 | 19..693 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:50:52 Download gff for
BO13876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15036934..15036991 | 694..751 | 96 | -> | Minus |
arm_2L | 15037051..15037725 | 19..693 | 100 | | Minus |
BO13876.5prime Sequence
807 bp (749 high quality bases) assembled on 2006-05-08
> BO13876.5prime
GAAGTTATCAGTCGACATGAACCCACTAGGAATGTTGAGCCTGGGCTTAA
TGGTGTGCCTTATCGGCGCCTTCAGCCGGATTGCATCGGCCAAGCTGGAG
GAGAAGTTCTCGTGGAAGCAACTGGCCTTCGATTGGCCCACTCCGGAGGC
CGAGGCGGAGGCCAAGTCGAATGGCCACTACATCGTGGAGAACAACCTGC
CGCTGGGCGTGGAGCGTTGGCAAAACAGAATCTTTGTCACTGTGCCAAGA
TGGAAGGCTGGTGTTGCTGCCACACTCAACTACATCGACATTAATTCGAC
GGAGAAGTCGCCAAAGCTGCATCCGTATCCCAGTTGGGAGGCCAACAAGC
TGCCCATCGATGTGCAGCCACAGGACCAAAAGACACCATCCGGTGGACGT
CTGGACGCGGACAAGGCTCAAGATGCCGGCATCCAGCTGAAGGACAACTC
CACTGTCATTTCCACCTTCCGAATTCAAGTCGACGTATGCGATCGCCTGT
GGGTGCTCGATACTGGCTTGGCCGACATCCTGGGCAGTCCCAAGCAGATT
ACGCCCAATTCAATCCTGGTTTTCGACTTGAAAACAGATACTTTACTGCG
CCGTTTCACCATTCCCGCTGATCAGACCAAAGAGGACTCGTTCTTTGCGA
ATATTGTTGTGGATGCGGACCGCTCGGAGTGCCAAGATGCCTTTGCTTAC
ATTCCGGATTTGGGTGCCTACGGTGTGATTGTGTACTCCCTGAGGAACGA
CAAATCCTACCGCGTCAAGCACAACTTCTTCCACTTCGATCCTCTGCATG
GTGATTT
BO13876.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4182-PA | 1317 | yellow-c-RA | 1..791 | 17..807 | 3955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-c-RB | 1600 | CG4182-RB | 171..961 | 17..807 | 3955 | 100 | Plus |
yellow-c-RA | 1522 | CG4182-RA | 93..883 | 17..807 | 3955 | 100 | Plus |
CIAPIN1-RA | 2358 | CG4180-RA | 1712..2121 | 657..248 | 2050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15036584..15036993 | 248..657 | 2050 | 100 | Plus |
2L | 23513712 | 2L | 15035564..15035796 | 17..249 | 1165 | 100 | Plus |
2L | 23513712 | 2L | 15037051..15037202 | 656..807 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:08:26 has no hits.
BO13876.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:28 Download gff for
BO13876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4182-PA | 1..791 | 17..807 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:50 Download gff for
BO13876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4182-PA | 1..791 | 17..807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:15:15 Download gff for
BO13876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-c-RA | 93..883 | 17..807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:44:04 Download gff for
BO13876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-c-RA | 93..883 | 17..807 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:44:04 Download gff for
BO13876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15037051..15037202 | 656..807 | 100 | | Plus |
2L | 15035564..15035796 | 17..249 | 100 | -> | Plus |
2L | 15036586..15036991 | 250..655 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:15:15 Download gff for
BO13876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15035564..15035796 | 17..249 | 100 | -> | Plus |
arm_2L | 15036586..15036991 | 250..655 | 100 | -> | Plus |
arm_2L | 15037051..15037202 | 656..807 | 100 | | Plus |
BO13876.complete Sequence
1348 bp assembled on 2006-10-11
GenBank Submission: FJ632964
> BO13876.complete
GAAGTTATCAGTCGACATGAACCCACTAGGAATGTTGAGCCTGGGCTTAA
TGGTGTGCCTTATCGGCGCCTTCAGCCGGATTGCATCGGCCAAGCTGGAG
GAGAAGTTCTCGTGGAAGCAACTGGCCTTCGATTGGCCCACTCCGGAGGC
CGAGGCGGAGGCCAAGTCGAATGGCCACTACATCGTGGAGAACAACCTGC
CGCTGGGCGTGGAGCGTTGGCAAAACAGAATCTTTGTCACTGTGCCAAGA
TGGAAGGCTGGTGTTGCTGCCACACTCAACTACATCGACATTAATTCGAC
GGAGAAGTCGCCAAAGCTGCATCCGTATCCCAGTTGGGAGGCCAACAAGC
TGCCCATCGATGTGCAGCCACAGGACCAAAAGACACCATCCGGTGGACGT
CTGGACGCGGACAAGGCTCAAGATGCCGGCATCCAGCTGAAGGACAACTC
CACTGTCATTTCCACCTTCCGAATTCAAGTCGACGTATGCGATCGCCTGT
GGGTGCTCGATACTGGCTTGGCCGACATCCTGGGCAGTCCCAAGCAGATT
ACGCCCAATTCAATCCTGGTTTTCGACTTGAAAACAGATACTTTACTGCG
CCGTTTCACCATTCCCGCTGATCAGACCAAAGAGGACTCGTTCTTTGCGA
ATATTGTTGTGGATGCGGACCGCTCGGAGTGCCAAGATGCCTTTGCTTAC
ATTCCGGATTTGGGTGCCTACGGTGTGATTGTGTACTCCCTGAGGAACGA
CAAATCCTACCGCGTCAAGCACAACTTCTTCCACTTCGATCCTCTGCATG
GTGATTTCAATGTGGGCGGCGTGAACTTCCAGTGGACGGATGGCGTTTTT
GGGCTGGCCGTGGGCCCAATGAATCCAGATCACTCCAAGGACATTTATTT
CCATGCCCTGGCCAGTACCAAGGAGTTCAAGGTTTCGAACCGCGTGCTGC
AAAACGAATCACACGTGACCGCTGGCGATTCGTATTACGATTTTAAATAC
GTTGGTGACCGTGGCATGAATGGCCAGTCCACCGCCGAGGTCTTTGACCC
CGAGACCGGCGTCATCTTCTATACGCAGGTGAACAAAGACGCCATTGCTT
GTTGGAACATCAAGCGTCCATACACTCCGGACACCCAGGGGCTAATCGAT
TCCGATTCGCACACTCTGGTCTTTCCAAATGACATGAAAATCGACAATGA
AGGCACTATTTGGGTGCTGTCCGACAAGATGCCGACATATTTGTACAAGG
AACTCGATCCCTCGGCCGTCAACTATCGTATTTTGATGGGCCAGAACCGC
GATCTCATCAAGGGTACACCATGCGAAATGGCAAGCTTTCTAGACCAT
BO13876.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-c-RB | 1317 | CG4182-PB | 1..1314 | 17..1330 | 6570 | 100 | Plus |
yellow-c-RA | 1317 | CG4182-PA | 1..1314 | 17..1330 | 6570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-c-RB | 1600 | CG4182-RB | 171..1484 | 17..1330 | 6570 | 100 | Plus |
yellow-c-RA | 1522 | CG4182-RA | 93..1406 | 17..1330 | 6570 | 100 | Plus |
CIAPIN1-RA | 2358 | CG4180-RA | 980..1654 | 1330..656 | 3375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15037051..15037725 | 656..1330 | 3375 | 100 | Plus |
2L | 23513712 | 2L | 15036584..15036993 | 248..657 | 2050 | 100 | Plus |
2L | 23513712 | 2L | 15035564..15035796 | 17..249 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:52:12 has no hits.
BO13876.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:40 Download gff for
BO13876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-c-RA | 1..1317 | 17..1333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:42 Download gff for
BO13876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-c-RA | 94..1407 | 17..1330 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:36 Download gff for
BO13876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-c-RA | 93..1406 | 17..1332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:40 Download gff for
BO13876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-c-RA | 94..1407 | 17..1330 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:24 Download gff for
BO13876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-c-RA | 93..1406 | 17..1332 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:24 Download gff for
BO13876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15035564..15035796 | 17..249 | 100 | -> | Plus |
2L | 15036586..15036991 | 250..655 | 100 | -> | Plus |
2L | 15037051..15037725 | 656..1332 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:36 Download gff for
BO13876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15035564..15035796 | 17..249 | 100 | -> | Plus |
arm_2L | 15036586..15036991 | 250..655 | 100 | -> | Plus |
arm_2L | 15037051..15037725 | 656..1332 | 99 | | Plus |
BO13876.pep Sequence
Translation from 16 to 1348
> BO13876.pep
MNPLGMLSLGLMVCLIGAFSRIASAKLEEKFSWKQLAFDWPTPEAEAEAK
SNGHYIVENNLPLGVERWQNRIFVTVPRWKAGVAATLNYIDINSTEKSPK
LHPYPSWEANKLPIDVQPQDQKTPSGGRLDADKAQDAGIQLKDNSTVIST
FRIQVDVCDRLWVLDTGLADILGSPKQITPNSILVFDLKTDTLLRRFTIP
ADQTKEDSFFANIVVDADRSECQDAFAYIPDLGAYGVIVYSLRNDKSYRV
KHNFFHFDPLHGDFNVGGVNFQWTDGVFGLAVGPMNPDHSKDIYFHALAS
TKEFKVSNRVLQNESHVTAGDSYYDFKYVGDRGMNGQSTAEVFDPETGVI
FYTQVNKDAIACWNIKRPYTPDTQGLIDSDSHTLVFPNDMKIDNEGTIWV
LSDKMPTYLYKELDPSAVNYRILMGQNRDLIKGTPCEMASFLDH
BO13876.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-c-PB | 438 | CG4182-PB | 1..438 | 1..438 | 2339 | 100 | Plus |
yellow-c-PA | 438 | CG4182-PA | 1..438 | 1..438 | 2339 | 100 | Plus |
yellow-b-PB | 453 | CG17914-PB | 1..404 | 6..438 | 840 | 37.6 | Plus |
yellow-b-PA | 453 | CG17914-PA | 1..404 | 6..438 | 840 | 37.6 | Plus |
y-PA | 541 | CG3757-PA | 21..407 | 23..438 | 830 | 40.3 | Plus |