Clone BO13876 Report

Search the DGRC for BO13876

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptyellow-c-RA
Protein status:BO13876.pep: validated full length
Sequenced Size:1348

Clone Sequence Records

BO13876.3prime Sequence

751 bp (728 high quality bases) assembled on 2006-05-08

> BO13876.3prime
ATGGTCTAGAAAGCTTGCCATTTCGCATGGTGTACCCTTGATGAGATCGC
GGTTCTGGCCCATCAAAATACGATAGTTGACGGCCGAGGGATCGAGTTCC
TTGTACAAATATGTCGGCATCTTGTCGGACAGCACCCAAATAGTGCCTTC
ATTGTCGATTTTCATGTCATTTGGAAAGACCAGAGTGTGCGAATCGGAAT
CGATTAGCCCCTGGGTGTCCGGAGTGTATGGACGCTTGATGTTCCAACAA
GCAATGGCGTCTTTGTTCACCTGCGTATAGAAGATGACGCCGGTCTCGGG
GTCAAAGACCTCGGCGGTGGACTGGCCATTCATGCCACGGTCACCAACGT
ATTTAAAATCGTAATACGAATCGCCAGCGGTCACGTGTGATTCGTTTTGC
AGCACGCGGTTCGAAACCTTGAACTCCTTGGTACTGGCCAGGGCATGGAA
ATAAATGTCCTTGGAGTGATCTGGATTCATTGGGCCCACGGCCAGCCCAA
AAACGCCATCCGTCCACTGGAAGTTCACGCCGCCCACATTGAAATCACCA
TGCAGAGGATCGAAGTGGAAGAAGTTGTGCTTGACGCGGTAGGATTTGTC
GTTCCTCAGGGAGTACACAATCACACCGTAGGCACCCAAATCCGGAATGT
AAGCAAAGGCATCTTGGCACTCCGAGCGGTCCGCATCCACAACAATATTC
GCAAAGAACGAGTCCTCTTTGGTCTGATCAGGCGGAATGGTGAAACGGCG
C

BO13876.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4182-PA 1317 yellow-c-RA 582..1314 751..19 3615 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-c-RB 1600 CG4182-RB 752..1484 751..19 3635 99.7 Minus
yellow-c-RA 1522 CG4182-RA 674..1406 751..19 3635 99.7 Minus
CIAPIN1-RA 2358 CG4180-RA 980..1654 19..693 3375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15037051..15037725 693..19 3375 100 Minus
2L 23513712 2L 15036934..15036993 751..692 270 96.7 Minus
Blast to na_te.dros performed 2015-02-10 14:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 5083..5135 188..137 109 69.8 Minus

BO13876.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:27 Download gff for BO13876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4182-PA 582..1317 16..751 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:49 Download gff for BO13876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4182-PA 582..1317 16..751 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:50:52 Download gff for BO13876.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 674..1406 19..751 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:18 Download gff for BO13876.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 674..1406 19..751 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:18 Download gff for BO13876.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15036934..15036991 694..751 96 -> Minus
2L 15037051..15037725 19..693 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:50:52 Download gff for BO13876.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15036934..15036991 694..751 96 -> Minus
arm_2L 15037051..15037725 19..693 100   Minus

BO13876.5prime Sequence

807 bp (749 high quality bases) assembled on 2006-05-08

> BO13876.5prime
GAAGTTATCAGTCGACATGAACCCACTAGGAATGTTGAGCCTGGGCTTAA
TGGTGTGCCTTATCGGCGCCTTCAGCCGGATTGCATCGGCCAAGCTGGAG
GAGAAGTTCTCGTGGAAGCAACTGGCCTTCGATTGGCCCACTCCGGAGGC
CGAGGCGGAGGCCAAGTCGAATGGCCACTACATCGTGGAGAACAACCTGC
CGCTGGGCGTGGAGCGTTGGCAAAACAGAATCTTTGTCACTGTGCCAAGA
TGGAAGGCTGGTGTTGCTGCCACACTCAACTACATCGACATTAATTCGAC
GGAGAAGTCGCCAAAGCTGCATCCGTATCCCAGTTGGGAGGCCAACAAGC
TGCCCATCGATGTGCAGCCACAGGACCAAAAGACACCATCCGGTGGACGT
CTGGACGCGGACAAGGCTCAAGATGCCGGCATCCAGCTGAAGGACAACTC
CACTGTCATTTCCACCTTCCGAATTCAAGTCGACGTATGCGATCGCCTGT
GGGTGCTCGATACTGGCTTGGCCGACATCCTGGGCAGTCCCAAGCAGATT
ACGCCCAATTCAATCCTGGTTTTCGACTTGAAAACAGATACTTTACTGCG
CCGTTTCACCATTCCCGCTGATCAGACCAAAGAGGACTCGTTCTTTGCGA
ATATTGTTGTGGATGCGGACCGCTCGGAGTGCCAAGATGCCTTTGCTTAC
ATTCCGGATTTGGGTGCCTACGGTGTGATTGTGTACTCCCTGAGGAACGA
CAAATCCTACCGCGTCAAGCACAACTTCTTCCACTTCGATCCTCTGCATG
GTGATTT

BO13876.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4182-PA 1317 yellow-c-RA 1..791 17..807 3955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-c-RB 1600 CG4182-RB 171..961 17..807 3955 100 Plus
yellow-c-RA 1522 CG4182-RA 93..883 17..807 3955 100 Plus
CIAPIN1-RA 2358 CG4180-RA 1712..2121 657..248 2050 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15036584..15036993 248..657 2050 100 Plus
2L 23513712 2L 15035564..15035796 17..249 1165 100 Plus
2L 23513712 2L 15037051..15037202 656..807 760 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:08:26 has no hits.

BO13876.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:28 Download gff for BO13876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4182-PA 1..791 17..807 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:50 Download gff for BO13876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4182-PA 1..791 17..807 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:15:15 Download gff for BO13876.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 93..883 17..807 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:44:04 Download gff for BO13876.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 93..883 17..807 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:44:04 Download gff for BO13876.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15037051..15037202 656..807 100   Plus
2L 15035564..15035796 17..249 100 -> Plus
2L 15036586..15036991 250..655 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:15:15 Download gff for BO13876.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15035564..15035796 17..249 100 -> Plus
arm_2L 15036586..15036991 250..655 100 -> Plus
arm_2L 15037051..15037202 656..807 100   Plus

BO13876.complete Sequence

1348 bp assembled on 2006-10-11

GenBank Submission: FJ632964

> BO13876.complete
GAAGTTATCAGTCGACATGAACCCACTAGGAATGTTGAGCCTGGGCTTAA
TGGTGTGCCTTATCGGCGCCTTCAGCCGGATTGCATCGGCCAAGCTGGAG
GAGAAGTTCTCGTGGAAGCAACTGGCCTTCGATTGGCCCACTCCGGAGGC
CGAGGCGGAGGCCAAGTCGAATGGCCACTACATCGTGGAGAACAACCTGC
CGCTGGGCGTGGAGCGTTGGCAAAACAGAATCTTTGTCACTGTGCCAAGA
TGGAAGGCTGGTGTTGCTGCCACACTCAACTACATCGACATTAATTCGAC
GGAGAAGTCGCCAAAGCTGCATCCGTATCCCAGTTGGGAGGCCAACAAGC
TGCCCATCGATGTGCAGCCACAGGACCAAAAGACACCATCCGGTGGACGT
CTGGACGCGGACAAGGCTCAAGATGCCGGCATCCAGCTGAAGGACAACTC
CACTGTCATTTCCACCTTCCGAATTCAAGTCGACGTATGCGATCGCCTGT
GGGTGCTCGATACTGGCTTGGCCGACATCCTGGGCAGTCCCAAGCAGATT
ACGCCCAATTCAATCCTGGTTTTCGACTTGAAAACAGATACTTTACTGCG
CCGTTTCACCATTCCCGCTGATCAGACCAAAGAGGACTCGTTCTTTGCGA
ATATTGTTGTGGATGCGGACCGCTCGGAGTGCCAAGATGCCTTTGCTTAC
ATTCCGGATTTGGGTGCCTACGGTGTGATTGTGTACTCCCTGAGGAACGA
CAAATCCTACCGCGTCAAGCACAACTTCTTCCACTTCGATCCTCTGCATG
GTGATTTCAATGTGGGCGGCGTGAACTTCCAGTGGACGGATGGCGTTTTT
GGGCTGGCCGTGGGCCCAATGAATCCAGATCACTCCAAGGACATTTATTT
CCATGCCCTGGCCAGTACCAAGGAGTTCAAGGTTTCGAACCGCGTGCTGC
AAAACGAATCACACGTGACCGCTGGCGATTCGTATTACGATTTTAAATAC
GTTGGTGACCGTGGCATGAATGGCCAGTCCACCGCCGAGGTCTTTGACCC
CGAGACCGGCGTCATCTTCTATACGCAGGTGAACAAAGACGCCATTGCTT
GTTGGAACATCAAGCGTCCATACACTCCGGACACCCAGGGGCTAATCGAT
TCCGATTCGCACACTCTGGTCTTTCCAAATGACATGAAAATCGACAATGA
AGGCACTATTTGGGTGCTGTCCGACAAGATGCCGACATATTTGTACAAGG
AACTCGATCCCTCGGCCGTCAACTATCGTATTTTGATGGGCCAGAACCGC
GATCTCATCAAGGGTACACCATGCGAAATGGCAAGCTTTCTAGACCAT

BO13876.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-c-RB 1317 CG4182-PB 1..1314 17..1330 6570 100 Plus
yellow-c-RA 1317 CG4182-PA 1..1314 17..1330 6570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-c-RB 1600 CG4182-RB 171..1484 17..1330 6570 100 Plus
yellow-c-RA 1522 CG4182-RA 93..1406 17..1330 6570 100 Plus
CIAPIN1-RA 2358 CG4180-RA 980..1654 1330..656 3375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15037051..15037725 656..1330 3375 100 Plus
2L 23513712 2L 15036584..15036993 248..657 2050 100 Plus
2L 23513712 2L 15035564..15035796 17..249 1165 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:52:12 has no hits.

BO13876.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:40 Download gff for BO13876.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 1..1317 17..1333 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:42 Download gff for BO13876.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 94..1407 17..1330 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:36 Download gff for BO13876.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 93..1406 17..1332 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:40 Download gff for BO13876.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 94..1407 17..1330 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:24 Download gff for BO13876.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 93..1406 17..1332 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:24 Download gff for BO13876.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15035564..15035796 17..249 100 -> Plus
2L 15036586..15036991 250..655 100 -> Plus
2L 15037051..15037725 656..1332 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:36 Download gff for BO13876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15035564..15035796 17..249 100 -> Plus
arm_2L 15036586..15036991 250..655 100 -> Plus
arm_2L 15037051..15037725 656..1332 99   Plus

BO13876.pep Sequence

Translation from 16 to 1348

> BO13876.pep
MNPLGMLSLGLMVCLIGAFSRIASAKLEEKFSWKQLAFDWPTPEAEAEAK
SNGHYIVENNLPLGVERWQNRIFVTVPRWKAGVAATLNYIDINSTEKSPK
LHPYPSWEANKLPIDVQPQDQKTPSGGRLDADKAQDAGIQLKDNSTVIST
FRIQVDVCDRLWVLDTGLADILGSPKQITPNSILVFDLKTDTLLRRFTIP
ADQTKEDSFFANIVVDADRSECQDAFAYIPDLGAYGVIVYSLRNDKSYRV
KHNFFHFDPLHGDFNVGGVNFQWTDGVFGLAVGPMNPDHSKDIYFHALAS
TKEFKVSNRVLQNESHVTAGDSYYDFKYVGDRGMNGQSTAEVFDPETGVI
FYTQVNKDAIACWNIKRPYTPDTQGLIDSDSHTLVFPNDMKIDNEGTIWV
LSDKMPTYLYKELDPSAVNYRILMGQNRDLIKGTPCEMASFLDH

BO13876.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-c-PB 438 CG4182-PB 1..438 1..438 2339 100 Plus
yellow-c-PA 438 CG4182-PA 1..438 1..438 2339 100 Plus
yellow-b-PB 453 CG17914-PB 1..404 6..438 840 37.6 Plus
yellow-b-PA 453 CG17914-PA 1..404 6..438 840 37.6 Plus
y-PA 541 CG3757-PA 21..407 23..438 830 40.3 Plus