Clone BO13877 Report

Search the DGRC for BO13877

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG12279-RA
Protein status:BO13877.pep:
Sequenced Size:364

Clone Sequence Records

BO13877.3prime Sequence

362 bp (361 high quality bases) assembled on 2006-05-08

> BO13877.3prime
ATGGTCTAGAAAGCTTGCGGACTGCTTGGCCTGCCACTCCGTCCATGATC
CGGCATAAGCCTTGGCGTTGGTGAAGCCCAGCGTGCTGGCCAGATTGGCC
GCCCGGGCAGCGCGTCCTCCCGCCTTGCACGAGAAGATCAAGACCGCATC
GACGGCCGGCTTGACGCGTCCATAAGTCTGGGCGAAGTCCTCCTCCGGCA
AGTTCAGTGCCTTCTCCAGCTCGCTCAGTGGAATGTTTATGCTGGCGGGC
AGGACGCCCGTCTCCTTCAGCTCCGACTCGTTGCGCACATCGAACAGGTA
CTTCTCCGGGTGGTTTGGAATGTCCTTGACTTCCTCGTAGGTGGCCATGT
CGACTGATAACT

BO13877.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12279-PA 333 CG12279-RA 1..330 348..19 1650 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12279-RA 601 CG12279-RA 68..397 348..19 1650 100 Minus
mus308-RA 6420 CG6019-RA 6329..6377 19..67 245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12705338..12705503 233..68 815 99.4 Minus
3R 32079331 3R 12705161..12705281 348..228 605 100 Minus
3R 32079331 3R 12705566..12705614 67..19 245 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:20:07 has no hits.

BO13877.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:29 Download gff for BO13877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12279-PA 1..333 15..348 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:52 Download gff for BO13877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12279-PA 1..333 15..348 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:38:21 Download gff for BO13877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12279-RA 68..407 9..348 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:38:02 Download gff for BO13877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12279-RA 68..407 9..348 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:38:02 Download gff for BO13877.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12705163..12705281 228..346 100 -> Minus
3R 12705344..12705503 68..227 100 -> Minus
3R 12705566..12705624 9..67 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:38:21 Download gff for BO13877.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8530885..8531003 228..346 100 -> Minus
arm_3R 8531066..8531225 68..227 100 -> Minus
arm_3R 8531288..8531346 9..67 93   Minus

BO13877.5prime Sequence

362 bp (361 high quality bases) assembled on 2006-05-08

> BO13877.5prime
GAAGTTATCAGTCGACATGGCCACCTACGAGGAAGTCAAGGACATTCCAA
ACCACCCGGAGAAGTACCTGTTCGATGTGCGCAACGAGTCGGAGCTGAAG
GAGACGGGCGTCCTGCCCGCCAGCATAAACATTCCACTGAGCGAGCTGGA
GAAGGCACTGAACTTGCCGGAGGAGGACTTCGCCCAGACTTATGGACGCG
TCAAGCCGGCCGTCGATGCGGTCTTGATCTTCTCGTGCAAGGCGGGAGGA
CGCGCTGCCCGGGCGGCCAATCTGGCCAGCACGCTGGGCTTCACCAACGC
CAAGGCTTATGCCGGATCATGGACGGAGTGGCAGGCCAAGCAGTCCGCAA
GCTTTCTAGACC

BO13877.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12279-PA 333 CG12279-RA 1..330 17..346 1650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12279-RA 601 CG12279-RA 68..397 17..346 1650 100 Plus
mus308-RA 6420 CG6019-RA 6329..6377 346..298 245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12705338..12705503 132..297 815 99.4 Plus
3R 32079331 3R 12705161..12705281 17..137 605 100 Plus
3R 32079331 3R 12705566..12705614 298..346 245 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:30:13 has no hits.

BO13877.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:30 Download gff for BO13877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12279-PA 1..333 17..350 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:53 Download gff for BO13877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12279-PA 1..333 17..350 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:40:37 Download gff for BO13877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12279-RA 68..407 17..356 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:42:13 Download gff for BO13877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12279-RA 68..407 17..356 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:42:13 Download gff for BO13877.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12705163..12705281 19..137 100 -> Plus
3R 12705344..12705503 138..297 100 -> Plus
3R 12705566..12705624 298..356 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:40:37 Download gff for BO13877.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8530885..8531003 19..137 100 -> Plus
arm_3R 8531066..8531225 138..297 100 -> Plus
arm_3R 8531288..8531346 298..356 93   Plus

BO13877.complete Sequence

364 bp assembled on 2007-06-22

GenBank Submission: FJ632965

> BO13877.complete
GAAGTTATCAGTCGACATGGCCACCTACGAGGAAGTCAAGGACATTCCAA
ACCACCCGGAGAAGTACCTGTTCGATGTGCGCAACGAGTCGGAGCTGAAG
GAGACGGGCGTCCTGCCCGCCAGCATAAACATTCCACTGAGCGAGCTGGA
GAAGGCACTGAACTTGCCGGAGGAGGACTTCGCCCAGACTTATGGACGCG
TCAAGCCGGCCGTCGATGCGGTCTTGATCTTCTCGTGCAAGGCGGGAGGA
CGCGCTGCCCGGGCGGCCAATCTGGCCAGCACGCTGGGCTTCACCAACGC
CAAGGCTTATGCCGGATCATGGACGGAGTGGCAGGCCAAGCAGTCCGCAA
GCTTTCTAGACCAT

BO13877.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12279-RA 333 CG12279-PA 1..330 17..346 1650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12279-RA 601 CG12279-RA 68..397 17..346 1650 100 Plus
mus308-RA 6420 CG6019-RA 6329..6377 346..298 245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12705338..12705503 132..297 815 99.4 Plus
3R 32079331 3R 12705161..12705281 17..137 605 100 Plus
3R 32079331 3R 12705566..12705614 298..346 245 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:46:46 has no hits.

BO13877.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:05 Download gff for BO13877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12279-RA 1..333 17..350 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:35 Download gff for BO13877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12279-RA 68..407 17..356 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:14 Download gff for BO13877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12279-RA 68..397 17..348 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:05 Download gff for BO13877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12279-RA 68..407 17..356 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:38 Download gff for BO13877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12279-RA 68..397 17..348 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:38 Download gff for BO13877.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12705161..12705281 17..137 100 -> Plus
3R 12705344..12705503 138..297 100 -> Plus
3R 12705566..12705614 298..348 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:14 Download gff for BO13877.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8530883..8531003 17..137 100 -> Plus
arm_3R 8531066..8531225 138..297 100 -> Plus
arm_3R 8531288..8531336 298..348 96   Plus

BO13877.pep Sequence

Translation from 16 to 364

> BO13877.pep
MATYEEVKDIPNHPEKYLFDVRNESELKETGVLPASINIPLSELEKALNL
PEEDFAQTYGRVKPAVDAVLIFSCKAGGRAARAANLASTLGFTNAKAYAG
SWTEWQAKQSASFLDH

BO13877.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12279-PA 110 CG12279-PA 1..110 1..110 566 100 Plus
Hsp67Bb-PD 111 CG4456-PD 1..109 1..109 326 53.2 Plus
Hsp67Bb-PC 111 CG4456-PC 1..109 1..109 326 53.2 Plus
Hsp67Bb-PB 111 CG4456-PB 1..109 1..109 326 53.2 Plus
Hsp67Bb-PA 111 CG4456-PA 1..109 1..109 326 53.2 Plus