Clone Sequence Records
BO13877.3prime Sequence
362 bp (361 high quality bases) assembled on 2006-05-08
> BO13877.3prime
ATGGTCTAGAAAGCTTGCGGACTGCTTGGCCTGCCACTCCGTCCATGATC
CGGCATAAGCCTTGGCGTTGGTGAAGCCCAGCGTGCTGGCCAGATTGGCC
GCCCGGGCAGCGCGTCCTCCCGCCTTGCACGAGAAGATCAAGACCGCATC
GACGGCCGGCTTGACGCGTCCATAAGTCTGGGCGAAGTCCTCCTCCGGCA
AGTTCAGTGCCTTCTCCAGCTCGCTCAGTGGAATGTTTATGCTGGCGGGC
AGGACGCCCGTCTCCTTCAGCTCCGACTCGTTGCGCACATCGAACAGGTA
CTTCTCCGGGTGGTTTGGAATGTCCTTGACTTCCTCGTAGGTGGCCATGT
CGACTGATAACT
BO13877.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12279-PA | 333 | CG12279-RA | 1..330 | 348..19 | 1650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:20:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12279-RA | 601 | CG12279-RA | 68..397 | 348..19 | 1650 | 100 | Minus |
mus308-RA | 6420 | CG6019-RA | 6329..6377 | 19..67 | 245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:20:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12705338..12705503 | 233..68 | 815 | 99.4 | Minus |
3R | 32079331 | 3R | 12705161..12705281 | 348..228 | 605 | 100 | Minus |
3R | 32079331 | 3R | 12705566..12705614 | 67..19 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:20:07 has no hits.
BO13877.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:29 Download gff for
BO13877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-PA | 1..333 | 15..348 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:52 Download gff for
BO13877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-PA | 1..333 | 15..348 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:38:21 Download gff for
BO13877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 68..407 | 9..348 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:38:02 Download gff for
BO13877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 68..407 | 9..348 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:38:02 Download gff for
BO13877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12705163..12705281 | 228..346 | 100 | -> | Minus |
3R | 12705344..12705503 | 68..227 | 100 | -> | Minus |
3R | 12705566..12705624 | 9..67 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:38:21 Download gff for
BO13877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8530885..8531003 | 228..346 | 100 | -> | Minus |
arm_3R | 8531066..8531225 | 68..227 | 100 | -> | Minus |
arm_3R | 8531288..8531346 | 9..67 | 93 | | Minus |
BO13877.5prime Sequence
362 bp (361 high quality bases) assembled on 2006-05-08
> BO13877.5prime
GAAGTTATCAGTCGACATGGCCACCTACGAGGAAGTCAAGGACATTCCAA
ACCACCCGGAGAAGTACCTGTTCGATGTGCGCAACGAGTCGGAGCTGAAG
GAGACGGGCGTCCTGCCCGCCAGCATAAACATTCCACTGAGCGAGCTGGA
GAAGGCACTGAACTTGCCGGAGGAGGACTTCGCCCAGACTTATGGACGCG
TCAAGCCGGCCGTCGATGCGGTCTTGATCTTCTCGTGCAAGGCGGGAGGA
CGCGCTGCCCGGGCGGCCAATCTGGCCAGCACGCTGGGCTTCACCAACGC
CAAGGCTTATGCCGGATCATGGACGGAGTGGCAGGCCAAGCAGTCCGCAA
GCTTTCTAGACC
BO13877.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12279-PA | 333 | CG12279-RA | 1..330 | 17..346 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12279-RA | 601 | CG12279-RA | 68..397 | 17..346 | 1650 | 100 | Plus |
mus308-RA | 6420 | CG6019-RA | 6329..6377 | 346..298 | 245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:30:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12705338..12705503 | 132..297 | 815 | 99.4 | Plus |
3R | 32079331 | 3R | 12705161..12705281 | 17..137 | 605 | 100 | Plus |
3R | 32079331 | 3R | 12705566..12705614 | 298..346 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:30:13 has no hits.
BO13877.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:30 Download gff for
BO13877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-PA | 1..333 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:53 Download gff for
BO13877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-PA | 1..333 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:40:37 Download gff for
BO13877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 68..407 | 17..356 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:42:13 Download gff for
BO13877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 68..407 | 17..356 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:42:13 Download gff for
BO13877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12705163..12705281 | 19..137 | 100 | -> | Plus |
3R | 12705344..12705503 | 138..297 | 100 | -> | Plus |
3R | 12705566..12705624 | 298..356 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:40:37 Download gff for
BO13877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8530885..8531003 | 19..137 | 100 | -> | Plus |
arm_3R | 8531066..8531225 | 138..297 | 100 | -> | Plus |
arm_3R | 8531288..8531346 | 298..356 | 93 | | Plus |
BO13877.complete Sequence
364 bp assembled on 2007-06-22
GenBank Submission: FJ632965
> BO13877.complete
GAAGTTATCAGTCGACATGGCCACCTACGAGGAAGTCAAGGACATTCCAA
ACCACCCGGAGAAGTACCTGTTCGATGTGCGCAACGAGTCGGAGCTGAAG
GAGACGGGCGTCCTGCCCGCCAGCATAAACATTCCACTGAGCGAGCTGGA
GAAGGCACTGAACTTGCCGGAGGAGGACTTCGCCCAGACTTATGGACGCG
TCAAGCCGGCCGTCGATGCGGTCTTGATCTTCTCGTGCAAGGCGGGAGGA
CGCGCTGCCCGGGCGGCCAATCTGGCCAGCACGCTGGGCTTCACCAACGC
CAAGGCTTATGCCGGATCATGGACGGAGTGGCAGGCCAAGCAGTCCGCAA
GCTTTCTAGACCAT
BO13877.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12279-RA | 333 | CG12279-PA | 1..330 | 17..346 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12279-RA | 601 | CG12279-RA | 68..397 | 17..346 | 1650 | 100 | Plus |
mus308-RA | 6420 | CG6019-RA | 6329..6377 | 346..298 | 245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12705338..12705503 | 132..297 | 815 | 99.4 | Plus |
3R | 32079331 | 3R | 12705161..12705281 | 17..137 | 605 | 100 | Plus |
3R | 32079331 | 3R | 12705566..12705614 | 298..346 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:46:46 has no hits.
BO13877.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:05 Download gff for
BO13877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 1..333 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:35 Download gff for
BO13877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 68..407 | 17..356 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:14 Download gff for
BO13877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 68..397 | 17..348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:05 Download gff for
BO13877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 68..407 | 17..356 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:38 Download gff for
BO13877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 68..397 | 17..348 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:38 Download gff for
BO13877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12705161..12705281 | 17..137 | 100 | -> | Plus |
3R | 12705344..12705503 | 138..297 | 100 | -> | Plus |
3R | 12705566..12705614 | 298..348 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:14 Download gff for
BO13877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8530883..8531003 | 17..137 | 100 | -> | Plus |
arm_3R | 8531066..8531225 | 138..297 | 100 | -> | Plus |
arm_3R | 8531288..8531336 | 298..348 | 96 | | Plus |
BO13877.pep Sequence
Translation from 16 to 364
> BO13877.pep
MATYEEVKDIPNHPEKYLFDVRNESELKETGVLPASINIPLSELEKALNL
PEEDFAQTYGRVKPAVDAVLIFSCKAGGRAARAANLASTLGFTNAKAYAG
SWTEWQAKQSASFLDH
BO13877.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12279-PA | 110 | CG12279-PA | 1..110 | 1..110 | 566 | 100 | Plus |
Hsp67Bb-PD | 111 | CG4456-PD | 1..109 | 1..109 | 326 | 53.2 | Plus |
Hsp67Bb-PC | 111 | CG4456-PC | 1..109 | 1..109 | 326 | 53.2 | Plus |
Hsp67Bb-PB | 111 | CG4456-PB | 1..109 | 1..109 | 326 | 53.2 | Plus |
Hsp67Bb-PA | 111 | CG4456-PA | 1..109 | 1..109 | 326 | 53.2 | Plus |