Clone BO13878 Report

Search the DGRC for BO13878

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG12344-RA
Protein status:BO13878.pep: validated full length
Sequenced Size:1381

Clone Sequence Records

BO13878.3prime Sequence

748 bp (714 high quality bases) assembled on 2006-05-08

> BO13878.3prime
ATGGTCTAGAAAGCTTGCGGACGACTTCATCAGCAGTATCGGCCAGTACA
GGAGCACAAACACAAAGAACAGGATGGGGAATACGGCGCGGGACACCTTG
TCGATCTCTCGCCACATGATCTTCTCCACGCCGGTATCCGTATCCGTCCA
CGCCACGGAAAGTAGACTTTGACGTCTTGCTGGCTTCGGCGGTCCGCCGT
TACCCTGGAGCGATGTCTGGCCCGGTGTCGTGGGCGTCTGAGTGGCCTTC
CGCGACCGCACCGCTCCGCCCTCCCAACTGGCCACCGTCGCACACTGACC
CTTCTCCATATTGCTGATGCGCATGGGCAGTACCTTGGGTATGCGGTTCA
CCTGGTACTGGTACTGCACGTCCAGCACTTTCACCACCACGAACTCGGCC
AGCGCGGCGAACACGGACAGCATGCACCCGGCCATCCAGAGATCCAGTGC
CTTAACGTAGGCCACTGGCGGAATGTCGGCGCCCGTAAACATGGTCACCA
GGGTCAGCATGCAGGTCACCAGTAGCGTTACGCGCCCCGGAATGGCGTCC
AGTCCCAGCCAGAAGCTGAACCAGGACAGCATCACCACCAGCGATGAGGG
GGCGAAGGTCTGGATGAGGTGGTGGCCAATCTGGCGCTCGAAGCGGAAGT
ATACGGTGAGGCGGGAGAAGTTCCCACCTTCTCCGGCATGTAGCCGTCGC
TCTCCTCCAGTTCCAGCGGCTGGCCCAGATTGTACTGCAGCAGCTTCA

BO13878.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12344-PA 1350 CG12344-RA 691..1347 675..19 3285 100 Minus
CG12344-PA 1350 CG12344-RA 617..692 748..673 380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12344-RC 2731 CG12344-RC 772..1502 748..19 3630 99.9 Minus
CG12344-RA 2843 CG12344-RA 884..1614 748..19 3630 99.9 Minus
CG12344-RD 2719 CG12344-RD 772..1490 748..19 3440 98.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10829381..10829680 450..748 1450 99.7 Plus
2R 25286936 2R 10828659..10828858 19..218 1000 100 Plus
2R 25286936 2R 10829138..10829268 322..452 655 100 Plus
2R 25286936 2R 10828955..10829060 217..322 530 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:28:43 has no hits.

BO13878.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:31 Download gff for BO13878.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12344-PA 618..1350 18..747 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:55 Download gff for BO13878.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12344-PA 618..1350 18..747 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:40 Download gff for BO13878.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12344-RA 885..1622 10..747 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:21:38 Download gff for BO13878.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12344-RA 885..1622 10..747 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:21:38 Download gff for BO13878.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10828651..10828856 10..216 98 <- Plus
2R 10828955..10829059 217..321 100 <- Plus
2R 10829138..10829266 322..450 100 <- Plus
2R 10829382..10829679 451..747 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:40 Download gff for BO13878.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6716156..6716361 10..216 98 <- Plus
arm_2R 6716460..6716564 217..321 100 <- Plus
arm_2R 6716643..6716771 322..450 100 <- Plus
arm_2R 6716887..6717184 451..747 99   Plus

BO13878.5prime Sequence

808 bp (753 high quality bases) assembled on 2006-05-08

> BO13878.5prime
GAAGTTATCAGTCGACATGCTCGACAAATTCAACACAAACGCATTCATAT
CGTTTGGACTGGGATTCATACTGATGTGGCTGAGCGAAGCCACGGAAGCC
CACATGAACTACACAGCCAAGCCGCGAGTAGTTCTTCCGCCTAATTATGT
CAAGGAAATACGACCGCCCTCGAAGAAGGGCTCACCAGTGATAGTAGACT
TTAGCATATTCGTTGTAGATATTAACTCAATTAACGTAGAGGATATGGAC
TTTAGAGTAGACATGTTTATACATCAGCGCTGGCTGGAGTCGCGTCTGGA
GATCCCAGATGACATATTCGAGGAGGGCGACGACTACGTGACGCTGCTTC
CAGAGGTCTTTGAGAATTTTTGGCAGCCGGATCCGTACTTTCTTAATTCC
AAAATTGCCGAAATAGCGACACTGACCCACAAGTTCACGTCGGTGACGCT
CTACAAGAACAAAACGGTGCGCTATGCGGCCCGGATGCATGCGATCATCG
CCTGCCAGATGGAGTTCCAGCTGTACCCCATGGACATCCAGGTGTGTCCC
ATCTACATCGAGAGCTTCTCGTCGAACAATCAAAAGGTTAAGCTGCGCTG
GTCCGACTCCGGGGTGACCCTCAATCCGGAACTGAAGCTGCTGCAGTACA
ATCTGGGCCAGCCGCTGGAACTGGAGGAGAGCGACGGCTACATGCCGGAG
AAGGTGGGGAACTTCTCCCGCCTCACCGTATACTTCCGCTTCGAGCGCCA
GATTGGCCACCACCTCATCCAGACCTTCGCCCCCTCATCGCTGGTGGTGA
TGCTGTCC

BO13878.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12344-PA 1350 CG12344-RA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12344-RD 2719 CG12344-RD 155..947 16..808 3965 100 Plus
CG12344-RC 2731 CG12344-RC 155..947 16..808 3965 100 Plus
CG12344-RB 2831 CG12344-RB 267..1059 16..808 3965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10829505..10829746 808..567 1210 100 Minus
2R 25286936 2R 10829805..10829961 566..410 785 100 Minus
2R 25286936 2R 10831378..10831534 410..254 785 100 Minus
2R 25286936 2R 10831614..10831714 255..155 505 100 Minus
2R 25286936 2R 10833125..10833202 155..78 390 100 Minus
2R 25286936 2R 10833807..10833870 79..16 320 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:04:49 has no hits.

BO13878.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:32 Download gff for BO13878.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12344-PA 1..792 17..808 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:57 Download gff for BO13878.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12344-PA 1..792 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:35:18 Download gff for BO13878.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12344-RB 261..1059 9..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:50:13 Download gff for BO13878.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12344-RB 261..1059 9..808 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:50:13 Download gff for BO13878.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10833808..10833873 9..78 94   Minus
2R 10829505..10829746 567..808 100 <- Minus
2R 10829805..10829960 411..566 100 <- Minus
2R 10831378..10831532 256..410 100 <- Minus
2R 10831614..10831713 156..255 100 <- Minus
2R 10833125..10833201 79..155 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:35:18 Download gff for BO13878.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6717010..6717251 567..808 100 <- Minus
arm_2R 6717310..6717465 411..566 100 <- Minus
arm_2R 6718883..6719037 256..410 100 <- Minus
arm_2R 6719119..6719218 156..255 100 <- Minus
arm_2R 6720630..6720706 79..155 100 <- Minus
arm_2R 6721313..6721378 9..78 94   Minus

BO13878.complete Sequence

1381 bp assembled on 2006-10-11

GenBank Submission: FJ632966

> BO13878.complete
GAAGTTATCAGTCGACATGCTCGACAAATTCAACACAAACGCATTCATAT
CGTTTGGACTGGGATTCATACTGATGTGGCTGAGCGAAGCCACGGAAGCC
CACATGAACTACACAGCCAAGCCGCGAGTAGTTCTTCCGCCTAATTATGT
CAAGGAAATACGACCGCCCTCGAAGAAGGGCTCACCAGTGATAGTAGACT
TTAGCATATTCGTTGTAGATATTAACTCAATTAACGTAGAGGATATGGAC
TTTAGAGTAGACATGTTTATACATCAGCGCTGGCTGGAGTCGCGTCTGGA
GATCCCAGATGACATATTCGAGGAGGGCGACGACTACGTGACGCTGCTTC
CAGAGGTCTTTGAGAATTTTTGGCAGCCGGATCCGTACTTTCTTAATTCC
AAAATTGCCGAAATAGCGACACTGACCCACAAGTTCACGTCGGTGACGCT
CTACAAGAACAAAACGGTGCGCTATGCGGCCCGGATGCATGCGATCATCG
CCTGCCAGATGGAGTTCCAGCTGTACCCCATGGACATCCAGGTGTGTCCC
ATCTACATCGAGAGCTTCTCGTCGAACAATCAAAAGGTTAAGCTGCGCTG
GTCCGACTCCGGGGTGACCCTCAATCCGGAACTGAAGCTGCTGCAGTACA
ATCTGGGCCAGCCGCTGGAACTGGAGGAGAGCGACGGCTACATGCCGGAG
AAGGTGGGGAACTTCTCCCGCCTCACCGTATACTTCCGCTTCGAGCGCCA
GATTGGCCACCACCTCATCCAGACCTTCGCCCCCTCATCGCTGGTGGTGA
TGCTGTCCTGGTTCAGCTTCTGGCTGGGACTGGACGCCATTCCGGGGCGC
GTAACGCTACTGGTGACCTGCATGCTGACCCTGGTGACCATGTTTACGGG
CGCCGACATTCCGCCAGTGGCCTACGTTAAGGCACTGGATCTCTGGATGG
CCGGGTGCATGCTGTCCGTGTTCGCCGCGCTGGCCGAGTTCGTGGTGGTG
AAAGTGCTGGACGTGCAGTACCAGTACCAGGTGAACCGCATACCCAAGGT
ACTGCCCATGCGCATCAGCAATATGGAGAAGGGTCAGTGTGCGACGGTGG
CCAGTTGGGAGGGCGGAGCGGTGCGGTCGCGGAAGGCCACTCAGACGCCC
ACGACACCGGGCCAGACATCGCTCCAGGGTAACGGCGGACCGCCGAAGCC
AGCAAGACGTCAAAGTCTACTTTCCGTGGCGTGGACGGATACGGATACCG
GCGTGGAGAAGATCATGTGGCGAGAGATCGACAAGGTGTCCCGCGCCGTA
TTCCCCATCCTGTTCTTTGTGTTTGTGCTCCTGTACTGGCCGATACTGCT
GATGAAGTCGTCCGCAAGCTTTCTAGACCAT

BO13878.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12344-RC 1350 CG12344-PC 1..1347 17..1363 6735 100 Plus
CG12344-RA 1350 CG12344-PA 1..1347 17..1363 6735 100 Plus
CG12344-RD 1338 CG12344-PD 1..1335 17..1363 6520 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12344-RC 2731 CG12344-RC 155..1502 16..1363 6740 100 Plus
CG12344-RA 2843 CG12344-RA 267..1614 16..1363 6740 100 Plus
CG12344-RD 2719 CG12344-RD 155..1490 16..1363 6525 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10829381..10829746 932..567 1830 100 Minus
2R 25286936 2R 10828659..10828858 1363..1164 1000 100 Minus
2R 25286936 2R 10829805..10829961 566..410 785 100 Minus
2R 25286936 2R 10831378..10831534 410..254 785 100 Minus
2R 25286936 2R 10829138..10829268 1060..930 655 100 Minus
2R 25286936 2R 10828955..10829060 1165..1060 530 100 Minus
2R 25286936 2R 10831614..10831714 255..155 505 100 Minus
2R 25286936 2R 10833125..10833202 155..78 390 100 Minus
2R 25286936 2R 10833807..10833870 79..16 320 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:59:49 has no hits.

BO13878.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:41 Download gff for BO13878.complete
Subject Subject Range Query Range Percent Splice Strand
CG12344-RA 1..1350 17..1364 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:44 Download gff for BO13878.complete
Subject Subject Range Query Range Percent Splice Strand
CG12344-RA 261..1622 9..1372 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:15 Download gff for BO13878.complete
Subject Subject Range Query Range Percent Splice Strand
CG12344-RA 268..1614 17..1365 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:41 Download gff for BO13878.complete
Subject Subject Range Query Range Percent Splice Strand
CG12344-RA 261..1622 9..1372 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:26 Download gff for BO13878.complete
Subject Subject Range Query Range Percent Splice Strand
CG12344-RA 268..1614 17..1365 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:26 Download gff for BO13878.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10828657..10828856 1166..1365 99 <- Minus
2R 10828955..10829059 1061..1165 100 <- Minus
2R 10829138..10829266 932..1060 100 <- Minus
2R 10829382..10829746 567..931 100 <- Minus
2R 10829805..10829960 411..566 100 <- Minus
2R 10831378..10831532 256..410 100 <- Minus
2R 10831614..10831713 156..255 100 <- Minus
2R 10833125..10833201 79..155 100 <- Minus
2R 10833808..10833869 17..78 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:15 Download gff for BO13878.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6716162..6716361 1166..1365 99 <- Minus
arm_2R 6716460..6716564 1061..1165 100 <- Minus
arm_2R 6716643..6716771 932..1060 100 <- Minus
arm_2R 6716887..6717251 567..931 100 <- Minus
arm_2R 6717310..6717465 411..566 100 <- Minus
arm_2R 6718883..6719037 256..410 100 <- Minus
arm_2R 6719119..6719218 156..255 100 <- Minus
arm_2R 6720630..6720706 79..155 100 <- Minus
arm_2R 6721313..6721374 17..78 100   Minus

BO13878.pep Sequence

Translation from 16 to 1381

> BO13878.pep
MLDKFNTNAFISFGLGFILMWLSEATEAHMNYTAKPRVVLPPNYVKEIRP
PSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDI
FEEGDDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKT
VRYAARMHAIIACQMEFQLYPMDIQVCPIYIESFSSNNQKVKLRWSDSGV
TLNPELKLLQYNLGQPLELEESDGYMPEKVGNFSRLTVYFRFERQIGHHL
IQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGADIPP
VAYVKALDLWMAGCMLSVFAALAEFVVVKVLDVQYQYQVNRIPKVLPMRI
SNMEKGQCATVASWEGGAVRSRKATQTPTTPGQTSLQGNGGPPKPARRQS
LLSVAWTDTDTGVEKIMWREIDKVSRAVFPILFFVFVLLYWPILLMKSSA
SFLDH

BO13878.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12344-PC 449 CG12344-PC 1..449 1..449 2353 100 Plus
CG12344-PA 449 CG12344-PA 1..449 1..449 2353 100 Plus
CG12344-PD 445 CG12344-PD 1..445 1..449 2318 99.1 Plus
CG12344-PB 445 CG12344-PB 1..445 1..449 2318 99.1 Plus
HisCl1-PB 422 CG14723-PB 62..422 40..445 503 30.3 Plus