Clone Sequence Records
BO13879.3prime Sequence
551 bp (550 high quality bases) assembled on 2006-05-08
> BO13879.3prime
ATGGTCTAGAAAGCTTGCGCACTGTTCGTTACACTCATCGCCCGCGTCTG
CCTTTGTCCATACGGAGATTTTGTTGATATTTTTGCGAATCCTGACAAAA
GCCCCACAAATCTGATCGCAGTGATCGCAGGCCTCGCCAATCATGCAAAG
AAGCACGTCCAGCCAAGTTTTGTCCAGTTCGGCTGTGGACCTTTTATCCA
CTTTATATGTCCAACGACCTCCGCCCTTGTTCGGCGGATCCTCCCACATG
GGGCGAATGCCCTTCTTGAAGAGCATGTAATCACAGCCGCGGTTGAGCTT
GGATGGCGTATCGATGCGGAAATACAGGTTCCAGAAGTCCTCGACGGTAT
TGAAGCTGTCAATCTCCTTCAGCATGTCCTCCCATGATATTTCAGGGTCG
TACTTTACGCCCCACAGGGTCCATGTGTTCTGCAGCCGGTGCTTGTTTGT
GGCACCCAACGATGCCAGTTTGTTATTATCCAGAGAAGTCCCCATTTTAA
ATTCCGATGACTCTTTGGTTTGCCTTAAGTTTTCCATGTCGACTGATAAC
T
BO13879.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1442-PA | 522 | CG1442-RA | 1..519 | 537..19 | 2595 | 100 | Minus |
CG32859-PA | 1290 | CG32859-RA | 922..954 | 270..238 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:43:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-6-RC | 676 | CG1442-RC | 110..632 | 541..19 | 2600 | 99.8 | Minus |
eIF4E-6-RB | 686 | CG1442-RB | 120..642 | 541..19 | 2600 | 99.8 | Minus |
eIF4E-6-RA | 677 | CG1442-RA | 111..633 | 541..19 | 2600 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29026483..29027005 | 19..541 | 2600 | 99.8 | Plus |
3L | 28110227 | 3L | 9400583..9400713 | 254..384 | 190 | 76.3 | Plus |
Blast to na_te.dros performed on 2015-01-31 11:43:36 has no hits.
BO13879.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:33 Download gff for
BO13879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1442-PA | 1..522 | 15..537 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:58 Download gff for
BO13879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1442-PA | 1..522 | 15..537 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:51:57 Download gff for
BO13879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 103..636 | 15..551 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:58:04 Download gff for
BO13879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 103..636 | 15..551 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:58:04 Download gff for
BO13879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29026479..29027013 | 15..551 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:51:57 Download gff for
BO13879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24852201..24852735 | 15..551 | 98 | | Plus |
BO13879.5prime Sequence
551 bp (550 high quality bases) assembled on 2006-05-08
> BO13879.5prime
GAAGTTATCAGTCGACATGGAAAACTTAAGGCAAACCAAAGAGTCATCGG
AATTTAAAATGGGGACTTCTCTGGATAATAACAAACTGGCATCGTTGGGT
GCCACAAACAAGCACCGGCTGCAGAACACATGGACCCTGTGGGGCGTAAA
GTACGACCCTGAAATATCATGGGAGGACATGCTGAAGGAGATTGACAGCT
TCAATACCGTCGAGGACTTCTGGAACCTGTATTTCCGCATCGATACGCCA
TCCAAGCTCAACCGCGGCTGTGATTACATGCTCTTCAAGAAGGGCATTCG
CCCCATGTGGGAGGATCCGCCGAACAAGGGCGGAGGTCGTTGGACATATA
AAGTGGATAAAAGGTCCACAGCCGAACTGGACAAAACTTGGCTGGACGTG
CTTCTTTGCATGATTGGCGAGGCCTGCGATCACTGCGATCAGATTTGTGG
GGCTTTTGTCAGGATTCGCAAAAATATCAACAAAATCTCCGTATGGACAA
AGGCAGACGCGGGCGATGAGTGTAACGAACAGTGCGCAAGCTTTCTAGAC
C
BO13879.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1442-PA | 522 | CG1442-RA | 1..519 | 17..535 | 2595 | 100 | Plus |
CG32859-PA | 1290 | CG32859-RA | 922..954 | 284..316 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-6-RC | 676 | CG1442-RC | 110..632 | 13..535 | 2600 | 99.8 | Plus |
eIF4E-6-RB | 686 | CG1442-RB | 120..642 | 13..535 | 2600 | 99.8 | Plus |
eIF4E-6-RA | 677 | CG1442-RA | 111..633 | 13..535 | 2600 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29026483..29027005 | 535..13 | 2600 | 99.8 | Minus |
3L | 28110227 | 3L | 9400583..9400713 | 300..170 | 190 | 76.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:16:49 has no hits.
BO13879.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:34 Download gff for
BO13879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1442-PA | 1..522 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:59 Download gff for
BO13879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1442-PA | 1..522 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:03 Download gff for
BO13879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 102..636 | 1..539 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:16 Download gff for
BO13879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 102..636 | 1..539 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:16 Download gff for
BO13879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29026479..29027014 | 1..539 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:03 Download gff for
BO13879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24852201..24852736 | 1..539 | 98 | | Minus |
BO13879.complete Sequence
553 bp assembled on 2006-10-11
GenBank Submission: FJ632967
> BO13879.complete
GAAGTTATCAGTCGACATGGAAAACTTAAGGCAAACCAAAGAGTCATCGG
AATTTAAAATGGGGACTTCTCTGGATAATAACAAACTGGCATCGTTGGGT
GCCACAAACAAGCACCGGCTGCAGAACACATGGACCCTGTGGGGCGTAAA
GTACGACCCTGAAATATCATGGGAGGACATGCTGAAGGAGATTGACAGCT
TCAATACCGTCGAGGACTTCTGGAACCTGTATTTCCGCATCGATACGCCA
TCCAAGCTCAACCGCGGCTGTGATTACATGCTCTTCAAGAAGGGCATTCG
CCCCATGTGGGAGGATCCGCCGAACAAGGGCGGAGGTCGTTGGACATATA
AAGTGGATAAAAGGTCCACAGCCGAACTGGACAAAACTTGGCTGGACGTG
CTTCTTTGCATGATTGGCGAGGCCTGCGATCACTGCGATCAGATTTGTGG
GGCTTTTGTCAGGATTCGCAAAAATATCAACAAAATCTCCGTATGGACAA
AGGCAGACGCGGGCGATGAGTGTAACGAACAGTGCGCAAGCTTTCTAGAC
CAT
BO13879.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-6-RC | 522 | CG1442-PC | 1..519 | 17..535 | 2595 | 100 | Plus |
eIF4E-6-RB | 522 | CG1442-PB | 1..519 | 17..535 | 2595 | 100 | Plus |
eIF4E-6-RA | 522 | CG1442-PA | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-6-RC | 676 | CG1442-RC | 110..632 | 13..535 | 2600 | 99.8 | Plus |
eIF4E-6-RB | 686 | CG1442-RB | 120..642 | 13..535 | 2600 | 99.8 | Plus |
eIF4E-6-RA | 677 | CG1442-RA | 111..633 | 13..535 | 2600 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29026483..29027005 | 535..13 | 2600 | 99.8 | Minus |
3L | 28110227 | 3L | 9400583..9400713 | 300..170 | 190 | 76.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:55:40 has no hits.
BO13879.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:42 Download gff for
BO13879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 1..522 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:46 Download gff for
BO13879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 102..636 | 1..539 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:50 Download gff for
BO13879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 115..633 | 17..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:43 Download gff for
BO13879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 102..636 | 1..539 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:00 Download gff for
BO13879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 115..633 | 17..537 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:00 Download gff for
BO13879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29026481..29027001 | 17..537 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:50 Download gff for
BO13879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24852203..24852723 | 17..537 | 99 | | Minus |
BO13879.pep Sequence
Translation from 16 to 553
> BO13879.pep
MENLRQTKESSEFKMGTSLDNNKLASLGATNKHRLQNTWTLWGVKYDPEI
SWEDMLKEIDSFNTVEDFWNLYFRIDTPSKLNRGCDYMLFKKGIRPMWED
PPNKGGGRWTYKVDKRSTAELDKTWLDVLLCMIGEACDHCDQICGAFVRI
RKNINKISVWTKADAGDECNEQCASFLDH
BO13879.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-6-PC | 173 | CG1442-PC | 1..173 | 1..173 | 964 | 100 | Plus |
eIF4E-6-PB | 173 | CG1442-PB | 1..173 | 1..173 | 964 | 100 | Plus |
eIF4E-6-PA | 173 | CG1442-PA | 1..173 | 1..173 | 964 | 100 | Plus |
eIF-4E-PC | 248 | CG4035-PC | 69..212 | 32..179 | 451 | 57.4 | Plus |
eIF-4E-PI | 259 | CG4035-PI | 80..223 | 32..179 | 451 | 57.4 | Plus |