Clone BO13879 Report

Search the DGRC for BO13879

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:79
Vector:pDNR-Dual
Associated Gene/TranscripteIF4E-6-RA
Protein status:BO13879.pep: validated full length
Sequenced Size:553

Clone Sequence Records

BO13879.3prime Sequence

551 bp (550 high quality bases) assembled on 2006-05-08

> BO13879.3prime
ATGGTCTAGAAAGCTTGCGCACTGTTCGTTACACTCATCGCCCGCGTCTG
CCTTTGTCCATACGGAGATTTTGTTGATATTTTTGCGAATCCTGACAAAA
GCCCCACAAATCTGATCGCAGTGATCGCAGGCCTCGCCAATCATGCAAAG
AAGCACGTCCAGCCAAGTTTTGTCCAGTTCGGCTGTGGACCTTTTATCCA
CTTTATATGTCCAACGACCTCCGCCCTTGTTCGGCGGATCCTCCCACATG
GGGCGAATGCCCTTCTTGAAGAGCATGTAATCACAGCCGCGGTTGAGCTT
GGATGGCGTATCGATGCGGAAATACAGGTTCCAGAAGTCCTCGACGGTAT
TGAAGCTGTCAATCTCCTTCAGCATGTCCTCCCATGATATTTCAGGGTCG
TACTTTACGCCCCACAGGGTCCATGTGTTCTGCAGCCGGTGCTTGTTTGT
GGCACCCAACGATGCCAGTTTGTTATTATCCAGAGAAGTCCCCATTTTAA
ATTCCGATGACTCTTTGGTTTGCCTTAAGTTTTCCATGTCGACTGATAAC
T

BO13879.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1442-PA 522 CG1442-RA 1..519 537..19 2595 100 Minus
CG32859-PA 1290 CG32859-RA 922..954 270..238 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-6-RC 676 CG1442-RC 110..632 541..19 2600 99.8 Minus
eIF4E-6-RB 686 CG1442-RB 120..642 541..19 2600 99.8 Minus
eIF4E-6-RA 677 CG1442-RA 111..633 541..19 2600 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29026483..29027005 19..541 2600 99.8 Plus
3L 28110227 3L 9400583..9400713 254..384 190 76.3 Plus
Blast to na_te.dros performed on 2015-01-31 11:43:36 has no hits.

BO13879.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:33 Download gff for BO13879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1442-PA 1..522 15..537 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:58 Download gff for BO13879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1442-PA 1..522 15..537 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:51:57 Download gff for BO13879.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 103..636 15..551 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:58:04 Download gff for BO13879.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 103..636 15..551 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:58:04 Download gff for BO13879.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29026479..29027013 15..551 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:51:57 Download gff for BO13879.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24852201..24852735 15..551 98   Plus

BO13879.5prime Sequence

551 bp (550 high quality bases) assembled on 2006-05-08

> BO13879.5prime
GAAGTTATCAGTCGACATGGAAAACTTAAGGCAAACCAAAGAGTCATCGG
AATTTAAAATGGGGACTTCTCTGGATAATAACAAACTGGCATCGTTGGGT
GCCACAAACAAGCACCGGCTGCAGAACACATGGACCCTGTGGGGCGTAAA
GTACGACCCTGAAATATCATGGGAGGACATGCTGAAGGAGATTGACAGCT
TCAATACCGTCGAGGACTTCTGGAACCTGTATTTCCGCATCGATACGCCA
TCCAAGCTCAACCGCGGCTGTGATTACATGCTCTTCAAGAAGGGCATTCG
CCCCATGTGGGAGGATCCGCCGAACAAGGGCGGAGGTCGTTGGACATATA
AAGTGGATAAAAGGTCCACAGCCGAACTGGACAAAACTTGGCTGGACGTG
CTTCTTTGCATGATTGGCGAGGCCTGCGATCACTGCGATCAGATTTGTGG
GGCTTTTGTCAGGATTCGCAAAAATATCAACAAAATCTCCGTATGGACAA
AGGCAGACGCGGGCGATGAGTGTAACGAACAGTGCGCAAGCTTTCTAGAC
C

BO13879.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1442-PA 522 CG1442-RA 1..519 17..535 2595 100 Plus
CG32859-PA 1290 CG32859-RA 922..954 284..316 140 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-6-RC 676 CG1442-RC 110..632 13..535 2600 99.8 Plus
eIF4E-6-RB 686 CG1442-RB 120..642 13..535 2600 99.8 Plus
eIF4E-6-RA 677 CG1442-RA 111..633 13..535 2600 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29026483..29027005 535..13 2600 99.8 Minus
3L 28110227 3L 9400583..9400713 300..170 190 76.3 Minus
Blast to na_te.dros performed on 2015-02-12 06:16:49 has no hits.

BO13879.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:34 Download gff for BO13879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1442-PA 1..522 17..539 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:59 Download gff for BO13879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1442-PA 1..522 17..539 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:03 Download gff for BO13879.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 102..636 1..539 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:16 Download gff for BO13879.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 102..636 1..539 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:16 Download gff for BO13879.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29026479..29027014 1..539 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:03 Download gff for BO13879.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24852201..24852736 1..539 98   Minus

BO13879.complete Sequence

553 bp assembled on 2006-10-11

GenBank Submission: FJ632967

> BO13879.complete
GAAGTTATCAGTCGACATGGAAAACTTAAGGCAAACCAAAGAGTCATCGG
AATTTAAAATGGGGACTTCTCTGGATAATAACAAACTGGCATCGTTGGGT
GCCACAAACAAGCACCGGCTGCAGAACACATGGACCCTGTGGGGCGTAAA
GTACGACCCTGAAATATCATGGGAGGACATGCTGAAGGAGATTGACAGCT
TCAATACCGTCGAGGACTTCTGGAACCTGTATTTCCGCATCGATACGCCA
TCCAAGCTCAACCGCGGCTGTGATTACATGCTCTTCAAGAAGGGCATTCG
CCCCATGTGGGAGGATCCGCCGAACAAGGGCGGAGGTCGTTGGACATATA
AAGTGGATAAAAGGTCCACAGCCGAACTGGACAAAACTTGGCTGGACGTG
CTTCTTTGCATGATTGGCGAGGCCTGCGATCACTGCGATCAGATTTGTGG
GGCTTTTGTCAGGATTCGCAAAAATATCAACAAAATCTCCGTATGGACAA
AGGCAGACGCGGGCGATGAGTGTAACGAACAGTGCGCAAGCTTTCTAGAC
CAT

BO13879.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-6-RC 522 CG1442-PC 1..519 17..535 2595 100 Plus
eIF4E-6-RB 522 CG1442-PB 1..519 17..535 2595 100 Plus
eIF4E-6-RA 522 CG1442-PA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-6-RC 676 CG1442-RC 110..632 13..535 2600 99.8 Plus
eIF4E-6-RB 686 CG1442-RB 120..642 13..535 2600 99.8 Plus
eIF4E-6-RA 677 CG1442-RA 111..633 13..535 2600 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29026483..29027005 535..13 2600 99.8 Minus
3L 28110227 3L 9400583..9400713 300..170 190 76.3 Minus
Blast to na_te.dros performed on 2014-11-27 13:55:40 has no hits.

BO13879.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:42 Download gff for BO13879.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 1..522 17..539 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:46 Download gff for BO13879.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 102..636 1..539 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:50 Download gff for BO13879.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 115..633 17..537 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:43 Download gff for BO13879.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 102..636 1..539 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:00 Download gff for BO13879.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 115..633 17..537 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:00 Download gff for BO13879.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29026481..29027001 17..537 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:50 Download gff for BO13879.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24852203..24852723 17..537 99   Minus

BO13879.pep Sequence

Translation from 16 to 553

> BO13879.pep
MENLRQTKESSEFKMGTSLDNNKLASLGATNKHRLQNTWTLWGVKYDPEI
SWEDMLKEIDSFNTVEDFWNLYFRIDTPSKLNRGCDYMLFKKGIRPMWED
PPNKGGGRWTYKVDKRSTAELDKTWLDVLLCMIGEACDHCDQICGAFVRI
RKNINKISVWTKADAGDECNEQCASFLDH

BO13879.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-6-PC 173 CG1442-PC 1..173 1..173 964 100 Plus
eIF4E-6-PB 173 CG1442-PB 1..173 1..173 964 100 Plus
eIF4E-6-PA 173 CG1442-PA 1..173 1..173 964 100 Plus
eIF-4E-PC 248 CG4035-PC 69..212 32..179 451 57.4 Plus
eIF-4E-PI 259 CG4035-PI 80..223 32..179 451 57.4 Plus