Clone BO13880 Report

Search the DGRC for BO13880

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG15220-RA
Protein status:BO13880.pep: validated full length
Sequenced Size:370

Clone Sequence Records

BO13880.3prime Sequence

368 bp (367 high quality bases) assembled on 2006-05-08

> BO13880.3prime
ATGGTCTAGAAAGCTTGCGCCGCTGCGATAGAAGGCCTTGACATTGTTAA
TCAGGTGGCTCAATCCATTATAGCCATCCTTATCGAAGTCGATGTTCTCG
CCGCCAAACTCGATGACCTCCTTGGCCCTGAGGGTGTCCGCACCATGGGG
CACTCCAATGACCTCGACCCAGGCCCCTTCGGCGGCGCCCAGCTCACCCG
GCAGATTGATCTTTAGCTTGTGGTTGTCTGTGGAACTGGCCAGCAAAGTG
GATCCCGCGACGCTCTCCACGCGAACCATTATGCTCACGGTTTGGCCGGA
AAACTGCTTCAGCATGCCGCCGTTGATAATCGAGCGTGGATCAAAGGCAT
CCATGTCGACTGATAACT

BO13880.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG15220-PA 339 CG15220-RA 1..336 354..19 1680 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
RPA3-RB 673 CG15220-RB 87..422 354..19 1680 100 Minus
RPA3-RA 541 CG15220-RA 87..422 354..19 1680 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11615516..11615754 116..354 1195 100 Plus
X 23542271 X 11615348..11615448 19..119 505 100 Plus
Blast to na_te.dros performed on 2015-02-01 04:18:33 has no hits.

BO13880.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:35 Download gff for BO13880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15220-PA 1..339 18..354 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:00 Download gff for BO13880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15220-PA 1..339 18..354 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:03:59 Download gff for BO13880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15220-RA 80..422 19..361 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:45:49 Download gff for BO13880.3prime
Subject Subject Range Query Range Percent Splice Strand
RPA3-RA 80..422 19..361 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:45:49 Download gff for BO13880.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11615348..11615446 19..117 100 <- Plus
X 11615518..11615761 118..361 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:03:59 Download gff for BO13880.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11509381..11509479 19..117 100 <- Plus
arm_X 11509551..11509794 118..361 98   Plus

BO13880.5prime Sequence

368 bp (367 high quality bases) assembled on 2006-05-08

> BO13880.5prime
GAAGTTATCAGTCGACATGGATGCCTTTGATCCACGCTCGATTATCAACG
GCGGCATGCTGAAGCAGTTTTCCGGCCAAACCGTGAGCATAATGGTTCGC
GTGGAGAGCGTCGCGGGATCCACTTTGCTGGCCAGTTCCACAGACAACCA
CAAGCTAAAGATCAATCTGCCGGGTGAGCTGGGCGCCGCCGAAGGGGCCT
GGGTCGAGGTCATTGGAGTGCCCCATGGTGCGGACACCCTCAGGGCCAAG
GAGGTCATCGAGTTTGGCGGCGAGAACATCGACTTCGATAAGGATGGCTA
TAATGGATTGAGCCACCTGATTAACAATGTCAAGGCCTTCTATCGCAGCG
GCGCAAGCTTTCTAGACC

BO13880.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15220-PA 339 CG15220-RA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
RPA3-RB 673 CG15220-RB 87..422 17..352 1680 100 Plus
RPA3-RA 541 CG15220-RA 87..422 17..352 1680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11615516..11615754 255..17 1195 100 Minus
X 23542271 X 11615348..11615448 352..252 505 100 Minus
Blast to na_te.dros performed on 2015-02-02 09:10:46 has no hits.

BO13880.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:36 Download gff for BO13880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15220-PA 1..339 17..353 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:02 Download gff for BO13880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15220-PA 1..339 17..353 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:53:22 Download gff for BO13880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15220-RA 80..422 10..352 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:12:47 Download gff for BO13880.5prime
Subject Subject Range Query Range Percent Splice Strand
RPA3-RA 80..422 10..352 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:12:47 Download gff for BO13880.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11615348..11615446 254..352 100 <- Minus
X 11615518..11615761 10..253 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:53:22 Download gff for BO13880.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11509381..11509479 254..352 100 <- Minus
arm_X 11509551..11509794 10..253 98   Minus

BO13880.complete Sequence

370 bp assembled on 2006-10-11

GenBank Submission: FJ632968

> BO13880.complete
GAAGTTATCAGTCGACATGGATGCCTTTGATCCACGCTCGATTATCAACG
GCGGCATGCTGAAGCAGTTTTCCGGCCAAACCGTGAGCATAATGGTTCGC
GTGGAGAGCGTCGCGGGATCCACTTTGCTGGCCAGTTCCACAGACAACCA
CAAGCTAAAGATCAATCTGCCGGGTGAGCTGGGCGCCGCCGAAGGGGCCT
GGGTCGAGGTCATTGGAGTGCCCCATGGTGCGGACACCCTCAGGGCCAAG
GAGGTCATCGAGTTTGGCGGCGAGAACATCGACTTCGATAAGGATGGCTA
TAATGGATTGAGCCACCTGATTAACAATGTCAAGGCCTTCTATCGCAGCG
GCGCAAGCTTTCTAGACCAT

BO13880.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
RPA3-RB 339 CG15220-PB 1..336 17..352 1680 100 Plus
RPA3-RA 339 CG15220-PA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
RPA3-RB 673 CG15220-RB 87..422 17..352 1680 100 Plus
RPA3-RA 541 CG15220-RA 87..422 17..352 1680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11615516..11615754 255..17 1195 100 Minus
X 23542271 X 11615348..11615448 352..252 505 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:29:03 has no hits.

BO13880.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:44 Download gff for BO13880.complete
Subject Subject Range Query Range Percent Splice Strand
CG15220-RA 1..339 17..353 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:47 Download gff for BO13880.complete
Subject Subject Range Query Range Percent Splice Strand
CG15220-RA 80..422 10..352 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:37 Download gff for BO13880.complete
Subject Subject Range Query Range Percent Splice Strand
CG15220-RA 87..422 17..354 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:44 Download gff for BO13880.complete
Subject Subject Range Query Range Percent Splice Strand
CG15220-RA 80..422 10..352 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:57 Download gff for BO13880.complete
Subject Subject Range Query Range Percent Splice Strand
RPA3-RA 87..422 17..354 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:57 Download gff for BO13880.complete
Subject Subject Range Query Range Percent Splice Strand
X 11615346..11615446 254..354 98 <- Minus
X 11615518..11615754 17..253 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:37 Download gff for BO13880.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11509379..11509479 254..354 98 <- Minus
arm_X 11509551..11509787 17..253 100   Minus

BO13880.pep Sequence

Translation from 16 to 370

> BO13880.pep
MDAFDPRSIINGGMLKQFSGQTVSIMVRVESVAGSTLLASSTDNHKLKIN
LPGELGAAEGAWVEVIGVPHGADTLRAKEVIEFGGENIDFDKDGYNGLSH
LINNVKAFYRSGASFLDH

BO13880.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
RPA3-PB 112 CG15220-PB 1..112 1..112 574 100 Plus
RPA3-PA 112 CG15220-PA 1..112 1..112 574 100 Plus