Clone Sequence Records
BO13880.3prime Sequence
368 bp (367 high quality bases) assembled on 2006-05-08
> BO13880.3prime
ATGGTCTAGAAAGCTTGCGCCGCTGCGATAGAAGGCCTTGACATTGTTAA
TCAGGTGGCTCAATCCATTATAGCCATCCTTATCGAAGTCGATGTTCTCG
CCGCCAAACTCGATGACCTCCTTGGCCCTGAGGGTGTCCGCACCATGGGG
CACTCCAATGACCTCGACCCAGGCCCCTTCGGCGGCGCCCAGCTCACCCG
GCAGATTGATCTTTAGCTTGTGGTTGTCTGTGGAACTGGCCAGCAAAGTG
GATCCCGCGACGCTCTCCACGCGAACCATTATGCTCACGGTTTGGCCGGA
AAACTGCTTCAGCATGCCGCCGTTGATAATCGAGCGTGGATCAAAGGCAT
CCATGTCGACTGATAACT
BO13880.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15220-PA | 339 | CG15220-RA | 1..336 | 354..19 | 1680 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:18:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RPA3-RB | 673 | CG15220-RB | 87..422 | 354..19 | 1680 | 100 | Minus |
RPA3-RA | 541 | CG15220-RA | 87..422 | 354..19 | 1680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:18:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11615516..11615754 | 116..354 | 1195 | 100 | Plus |
X | 23542271 | X | 11615348..11615448 | 19..119 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 04:18:33 has no hits.
BO13880.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:35 Download gff for
BO13880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-PA | 1..339 | 18..354 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:00 Download gff for
BO13880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-PA | 1..339 | 18..354 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:03:59 Download gff for
BO13880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-RA | 80..422 | 19..361 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:45:49 Download gff for
BO13880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RPA3-RA | 80..422 | 19..361 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:45:49 Download gff for
BO13880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11615348..11615446 | 19..117 | 100 | <- | Plus |
X | 11615518..11615761 | 118..361 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:03:59 Download gff for
BO13880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11509381..11509479 | 19..117 | 100 | <- | Plus |
arm_X | 11509551..11509794 | 118..361 | 98 | | Plus |
BO13880.5prime Sequence
368 bp (367 high quality bases) assembled on 2006-05-08
> BO13880.5prime
GAAGTTATCAGTCGACATGGATGCCTTTGATCCACGCTCGATTATCAACG
GCGGCATGCTGAAGCAGTTTTCCGGCCAAACCGTGAGCATAATGGTTCGC
GTGGAGAGCGTCGCGGGATCCACTTTGCTGGCCAGTTCCACAGACAACCA
CAAGCTAAAGATCAATCTGCCGGGTGAGCTGGGCGCCGCCGAAGGGGCCT
GGGTCGAGGTCATTGGAGTGCCCCATGGTGCGGACACCCTCAGGGCCAAG
GAGGTCATCGAGTTTGGCGGCGAGAACATCGACTTCGATAAGGATGGCTA
TAATGGATTGAGCCACCTGATTAACAATGTCAAGGCCTTCTATCGCAGCG
GCGCAAGCTTTCTAGACC
BO13880.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15220-PA | 339 | CG15220-RA | 1..336 | 17..352 | 1680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RPA3-RB | 673 | CG15220-RB | 87..422 | 17..352 | 1680 | 100 | Plus |
RPA3-RA | 541 | CG15220-RA | 87..422 | 17..352 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11615516..11615754 | 255..17 | 1195 | 100 | Minus |
X | 23542271 | X | 11615348..11615448 | 352..252 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:10:46 has no hits.
BO13880.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:36 Download gff for
BO13880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-PA | 1..339 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:02 Download gff for
BO13880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-PA | 1..339 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:53:22 Download gff for
BO13880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-RA | 80..422 | 10..352 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:12:47 Download gff for
BO13880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RPA3-RA | 80..422 | 10..352 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:12:47 Download gff for
BO13880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11615348..11615446 | 254..352 | 100 | <- | Minus |
X | 11615518..11615761 | 10..253 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:53:22 Download gff for
BO13880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11509381..11509479 | 254..352 | 100 | <- | Minus |
arm_X | 11509551..11509794 | 10..253 | 98 | | Minus |
BO13880.complete Sequence
370 bp assembled on 2006-10-11
GenBank Submission: FJ632968
> BO13880.complete
GAAGTTATCAGTCGACATGGATGCCTTTGATCCACGCTCGATTATCAACG
GCGGCATGCTGAAGCAGTTTTCCGGCCAAACCGTGAGCATAATGGTTCGC
GTGGAGAGCGTCGCGGGATCCACTTTGCTGGCCAGTTCCACAGACAACCA
CAAGCTAAAGATCAATCTGCCGGGTGAGCTGGGCGCCGCCGAAGGGGCCT
GGGTCGAGGTCATTGGAGTGCCCCATGGTGCGGACACCCTCAGGGCCAAG
GAGGTCATCGAGTTTGGCGGCGAGAACATCGACTTCGATAAGGATGGCTA
TAATGGATTGAGCCACCTGATTAACAATGTCAAGGCCTTCTATCGCAGCG
GCGCAAGCTTTCTAGACCAT
BO13880.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RPA3-RB | 339 | CG15220-PB | 1..336 | 17..352 | 1680 | 100 | Plus |
RPA3-RA | 339 | CG15220-PA | 1..336 | 17..352 | 1680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RPA3-RB | 673 | CG15220-RB | 87..422 | 17..352 | 1680 | 100 | Plus |
RPA3-RA | 541 | CG15220-RA | 87..422 | 17..352 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11615516..11615754 | 255..17 | 1195 | 100 | Minus |
X | 23542271 | X | 11615348..11615448 | 352..252 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:29:03 has no hits.
BO13880.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:44 Download gff for
BO13880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-RA | 1..339 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:47 Download gff for
BO13880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-RA | 80..422 | 10..352 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:37 Download gff for
BO13880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-RA | 87..422 | 17..354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:44 Download gff for
BO13880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-RA | 80..422 | 10..352 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:57 Download gff for
BO13880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RPA3-RA | 87..422 | 17..354 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:57 Download gff for
BO13880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11615346..11615446 | 254..354 | 98 | <- | Minus |
X | 11615518..11615754 | 17..253 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:37 Download gff for
BO13880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11509379..11509479 | 254..354 | 98 | <- | Minus |
arm_X | 11509551..11509787 | 17..253 | 100 | | Minus |
BO13880.pep Sequence
Translation from 16 to 370
> BO13880.pep
MDAFDPRSIINGGMLKQFSGQTVSIMVRVESVAGSTLLASSTDNHKLKIN
LPGELGAAEGAWVEVIGVPHGADTLRAKEVIEFGGENIDFDKDGYNGLSH
LINNVKAFYRSGASFLDH
BO13880.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RPA3-PB | 112 | CG15220-PB | 1..112 | 1..112 | 574 | 100 | Plus |
RPA3-PA | 112 | CG15220-PA | 1..112 | 1..112 | 574 | 100 | Plus |