Clone Sequence Records
BO13883.3prime Sequence
452 bp (451 high quality bases) assembled on 2006-05-08
> BO13883.3prime
ATGGTCTAGAAAGCTTGCCCATCCATGAGCGAGTCCATAGGCAGGAGCAG
CAAGAGCTGTCTTGTAGCCCAGTCCCAGAGGAGCACCCAGAGTAGGATAT
GCCGACTTGTAGCCCAATCCCAAGGGAGCGGCCAGAGGGGCGTGAGCTAG
TCCCAAAGGACCATGAGCCAGGCCAATGGGACCGGGACCATATCCCAATC
CGTAGGCGGAAAGGGCCGGAGCAGCCAGAGGAGCGTGCGCCAAGGCCGGG
GCGGCATAGCTAAGCCTGGGGGCCAGCCCGTAAGAGGCAATCGAGGGAGC
AGCCAAGGCGTGTCCATAGGAGATGGCCGGAGCAGCTGCAGTCAGCGGCA
AGGCCGGAGCAGCTAATCCGCCCAAATAGCCAGGAGCAGCAGCAGCGCTG
GCCAGGCAGAAAACGGCGAAAACGAAGTATTTGAACATGTCGACTGATAA
CT
BO13883.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13065-PA | 423 | CG13065-RA | 1..420 | 438..19 | 2100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13065-RA | 677 | CG13065-RA | 53..472 | 438..19 | 2100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16277560..16277975 | 434..19 | 2050 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:19:15 has no hits.
BO13883.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:37 Download gff for
BO13883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13065-PA | 1..423 | 15..438 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:03 Download gff for
BO13883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13065-PA | 1..423 | 15..438 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:13:27 Download gff for
BO13883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13065-RA | 53..475 | 15..438 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:03:05 Download gff for
BO13883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13065-RA | 53..475 | 15..438 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:03:05 Download gff for
BO13883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16277568..16277978 | 15..426 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:13:27 Download gff for
BO13883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16270668..16271078 | 15..426 | 99 | | Minus |
BO13883.5prime Sequence
452 bp (451 high quality bases) assembled on 2006-05-08
> BO13883.5prime
GAAGTTATCAGTCGACATGTTCAAATACTTCGTTTTCGCCGTTTTCTGCC
TGGCCAGCGCTGCTGCTGCTCCTGGCTATTTGGGCGGATTAGCTGCTCCG
GCCTTGCCGCTGACTGCAGCTGCTCCGGCCATCTCCTATGGACACGCCTT
GGCTGCTCCCTCGATTGCCTCTTACGGGCTGGCCCCCAGGCTTAGCTATG
CCGCCCCGGCCTTGGCGCACGCTCCTCTGGCTGCTCCGGCCCTTTCCGCC
TACGGATTGGGATATGGTCCCGGTCCCATTGGCCTGGCTCATGGTCCTTT
GGGACTAGCTCACGCCCCTCTGGCCGCTCCCTTGGGATTGGGCTACAAGT
CGGCATATCCTACTCTGGGTGCTCCTCTGGGACTGGGCTACAAGACAGCT
CTTGCTGCTCCTGCCTATGGACTCGCTCATGGATGGGCAAGCTTTCTAGA
CC
BO13883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13065-PA | 423 | CG13065-RA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13065-RA | 677 | CG13065-RA | 53..472 | 17..436 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16277560..16277975 | 21..436 | 2050 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:03:31 has no hits.
BO13883.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:38 Download gff for
BO13883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13065-PA | 1..423 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:04 Download gff for
BO13883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13065-PA | 1..423 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:07:09 Download gff for
BO13883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13065-RA | 53..475 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:38:48 Download gff for
BO13883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13065-RA | 53..475 | 17..440 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:38:48 Download gff for
BO13883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16277568..16277978 | 29..440 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:07:09 Download gff for
BO13883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16270668..16271078 | 29..440 | 99 | | Plus |
BO13883.complete Sequence
454 bp assembled on 2006-10-11
GenBank Submission: FJ632969
> BO13883.complete
GAAGTTATCAGTCGACATGTTCAAATACTTCGTTTTCGCCGTTTTCTGCC
TGGCCAGCGCTGCTGCTGCTCCTGGCTATTTGGGCGGATTAGCTGCTCCG
GCCTTGCCGCTGACTGCAGCTGCTCCGGCCATCTCCTATGGACACGCCTT
GGCTGCTCCCTCGATTGCCTCTTACGGGCTGGCCCCCAGGCTTAGCTATG
CCGCCCCGGCCTTGGCGCACGCTCCTCTGGCTGCTCCGGCCCTTTCCGCC
TACGGATTGGGATATGGTCCCGGTCCCATTGGCCTGGCTCATGGTCCTTT
GGGACTAGCTCACGCCCCTCTGGCCGCTCCCTTGGGATTGGGCTACAAGT
CGGCATATCCTACTCTGGGTGCTCCTCTGGGACTGGGCTACAAGACAGCT
CTTGCTGCTCCTGCCTATGGACTCGCTCATGGATGGGCAAGCTTTCTAGA
CCAT
BO13883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:53:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13065-RA | 423 | CG13065-PA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13065-RA | 677 | CG13065-RA | 53..472 | 17..436 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16277560..16277975 | 21..436 | 2050 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:53:10 has no hits.
BO13883.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:42 Download gff for
BO13883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13065-RA | 1..423 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:44 Download gff for
BO13883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13065-RA | 55..477 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:57 Download gff for
BO13883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13065-RA | 58..472 | 22..438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:42 Download gff for
BO13883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13065-RA | 55..477 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:53 Download gff for
BO13883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13065-RA | 58..472 | 22..438 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:53 Download gff for
BO13883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16277561..16277975 | 22..438 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:57 Download gff for
BO13883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16270661..16271075 | 22..438 | 99 | | Plus |
BO13883.pep Sequence
Translation from 16 to 454
> BO13883.pep
MFKYFVFAVFCLASAAAAPGYLGGLAAPALPLTAAAPAISYGHALAAPSI
ASYGLAPRLSYAAPALAHAPLAAPALSAYGLGYGPGPIGLAHGPLGLAHA
PLAAPLGLGYKSAYPTLGAPLGLGYKTALAAPAYGLAHGWASFLDH
BO13883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13065-PA | 140 | CG13065-PA | 1..140 | 1..140 | 730 | 100 | Plus |
