Clone BO13884 Report

Search the DGRC for BO13884

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG7322-RA
Protein status:BO13884.pep: validated full length
Sequenced Size:760

Clone Sequence Records

BO13884.3prime Sequence

763 bp (758 high quality bases) assembled on 2006-05-08

> BO13884.3prime
ATGGTCTAGAAAGCTTGCGGAAACGGAATATCCACCTTCGAGCAGGATGT
GGTGGCCGTTCACGAAGCTCGACTTGCTGCTCAGCAGATAGCCGGTGGCG
TCCACCACCTCCTGCACCTCGCAGAACCGATTCAGCGGTATGTGGGCCAG
CAGCGGTCCACTCTTGGCGGGATCCGACCAATTGTCGGCGCCCATTTTGG
TCAGCACCACGGTGGGATTAACGGAATTGACGCGAATTTTGCGCGGACCC
AGCTCCAAGGCCAGCGACTTGGTCAGCGAATCGAGGGCCGCCTTGGTGGC
ACTGTAGGCCGTGTGGCCGCCAAAGGATCGGGATGACGCTATCGAGGACA
CGTTGACAATTGAGGCTCCGTCTTTCAAGCGGGGCAGCAGAGATTGGGTG
ACATTGAACACCGCCTTGATGTTCACATCGAAGTGGGTGTCGAAATCCTG
TTCGGTGAGCTCCTCGAATGGCTTGATGATGGCCACGCCGGCGTTGTTGA
CCAGACCGTCCAGCAGAGGCACCTTCGCCAGCCCCTCACGCACCGCCTGC
CAGCCGCTGAGATCCAATTGCAGCGGCTGGATGTGCACCGGATCGAAGGC
CACCAGCTGCTGGAGCTGCTCTGGCTTCCTGGCCACTGCGATGACGGTGG
CACCCGCGGAGGCCAACTGCTTGACCAACGCCTGGCCAATACCGGCCCCG
GCTCCGGTCACCAAGATCACCTTGCCCGCGAGATCTGTCCACATGTCGAC
TGATAACTTCGTA

BO13884.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7322-PA 729 CG7322-RA 1..726 744..19 3630 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7322-RC 1183 CG7322-RC 382..1107 744..19 3630 100 Minus
CG7322-RB 877 CG7322-RB 76..801 744..19 3630 100 Minus
CG7322-RA 934 CG7322-RA 66..791 744..19 3630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18856016..18856437 19..440 2095 99.8 Plus
X 23542271 X 18857069..18857376 437..744 1540 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:28:32 has no hits.

BO13884.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:39 Download gff for BO13884.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7322-PA 1..729 15..744 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:06 Download gff for BO13884.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7322-PA 1..729 15..744 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:38 Download gff for BO13884.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 61..795 14..749 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:21:36 Download gff for BO13884.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 61..795 14..749 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:21:36 Download gff for BO13884.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18857069..18857381 437..749 99   Plus
X 18856012..18856433 14..436 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:38 Download gff for BO13884.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18751102..18751414 437..749 99   Plus
arm_X 18750045..18750466 14..436 99 <- Plus

BO13884.5prime Sequence

259 bp (171 high quality bases) assembled on 2006-05-08

> BO13884.5prime
GAAGTTATCAGTCGACATGTGGACAGATCTCGCGGGCAAGGTGATCTTGG
TGACCGGAGCCGGGGCCGGTATTGGCCAGGCGTTGGTCAAGCAGTTGGCC
TCCGCGGGTGCCACCGTCATCGCAGTGGCCAGGAAGCCAGAGCAGCTCCC
GCAGCTGGTGGCCTTCGATCCGGTGCACATCCAGCCGCTGCAATTGGATC
TCAGCGGCTGGCAGGCGGTGCGTGAGGAGCTGGCGAACGTGCCTCTGCTG
GACGGTCTG

BO13884.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7322-PA 729 CG7322-RA 1..243 17..259 1140 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7322-RC 1183 CG7322-RC 382..624 17..259 1170 98.8 Plus
CG7322-RB 877 CG7322-RB 76..318 17..259 1170 98.8 Plus
CG7322-RA 934 CG7322-RA 66..308 17..259 1170 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18857134..18857376 259..17 1170 98.8 Minus
Blast to na_te.dros performed on 2015-02-11 16:38:12 has no hits.

BO13884.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:40 Download gff for BO13884.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7322-PA 1..243 17..259 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:07 Download gff for BO13884.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7322-PA 1..243 17..259 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:04:31 Download gff for BO13884.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 61..308 12..259 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:06 Download gff for BO13884.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 61..308 12..259 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:06 Download gff for BO13884.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18857134..18857381 12..259 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:04:31 Download gff for BO13884.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18751167..18751414 12..259 97   Minus

BO13884.complete Sequence

760 bp assembled on 2006-10-11

GenBank Submission: FJ638721

> BO13884.complete
GAAGTTATCAGTCGACATGTGGACAGATCTCGCGGGCAAGGTGATCTTGG
TGACCGGAGCCGGGGCCGGTATTGGCCAGGCGTTGGTCAAGCAGTTGGCC
TCCGCGGGTGCCACCGTCATCGCAGTGGCCAGGAAGCCAGAGCAGCTCCA
GCAGCTGGTGGCCTTCGATCCGGTGCACATCCAGCCGCTGCAATTGGATC
TCAGCGGCTGGCAGGCGGTGCGTGAGGGGCTGGCGAAGGTGCCTCTGCTG
GACGGTCTGGTCAACAACGCCGGCGTGGCCATCATCAAGCCATTCGAGGA
GCTCACCGAACAGGATTTCGACACCCACTTCGATGTGAACATCAAGGCGG
TGTTCAATGTCACCCAATCTCTGCTGCCCCGCTTGAAAGACGGAGCCTCA
ATTGTCAACGTGTCCTCGATAGCGTCATCCCGATCCTTTGGCGGCCACAC
GGCCTACAGTGCCACCAAGGCGGCCCTCGATTCGCTGACCAAGTCGCTGG
CCTTGGAGCTGGGTCCGCGCAAAATTCGCGTCAATTCCGTTAATCCCACC
GTGGTGCTGACCAAAATGGGCGCCGACAATTGGTCGGATCCCGCCAAGAG
TGGACCGCTGCTGGCCCACATACCGCTGAATCGGTTCTGCGAGGTGCAGG
AGGTGGTGGACGCCACCGGCTATCTGCTGAGCAGCAAGTCGAGCTTCGTG
AACGGCCACCACATCCTGCTCGAAGGTGGATATTCCGTTTCCGCAAGCTT
TCTAGACCAT

BO13884.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7322-RC 729 CG7322-PC 1..726 17..742 3630 100 Plus
CG7322-RB 729 CG7322-PB 1..726 17..742 3630 100 Plus
CG7322-RA 729 CG7322-PA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7322-RC 1183 CG7322-RC 382..1107 17..742 3630 100 Plus
CG7322-RB 877 CG7322-RB 76..801 17..742 3630 100 Plus
CG7322-RA 934 CG7322-RA 66..791 17..742 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18856016..18856437 742..321 2095 99.8 Minus
X 23542271 X 18857069..18857376 324..17 1540 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:47:37 has no hits.

BO13884.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:45 Download gff for BO13884.complete
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 1..729 17..746 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:49 Download gff for BO13884.complete
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 71..805 12..747 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:38 Download gff for BO13884.complete
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 66..791 17..744 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:45 Download gff for BO13884.complete
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 71..805 12..747 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:37 Download gff for BO13884.complete
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 66..791 17..744 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:37 Download gff for BO13884.complete
Subject Subject Range Query Range Percent Splice Strand
X 18856014..18856433 325..744 99 <- Minus
X 18857069..18857376 17..324 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:38 Download gff for BO13884.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18750047..18750466 325..744 99 <- Minus
arm_X 18751102..18751409 17..324 100   Minus

BO13884.pep Sequence

Translation from 16 to 760

> BO13884.pep
MWTDLAGKVILVTGAGAGIGQALVKQLASAGATVIAVARKPEQLQQLVAF
DPVHIQPLQLDLSGWQAVREGLAKVPLLDGLVNNAGVAIIKPFEELTEQD
FDTHFDVNIKAVFNVTQSLLPRLKDGASIVNVSSIASSRSFGGHTAYSAT
KAALDSLTKSLALELGPRKIRVNSVNPTVVLTKMGADNWSDPAKSGPLLA
HIPLNRFCEVQEVVDATGYLLSSKSSFVNGHHILLEGGYSVSASFLDH

BO13884.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7322-PC 242 CG7322-PC 1..242 1..242 1214 100 Plus
CG7322-PB 242 CG7322-PB 1..242 1..242 1214 100 Plus
CG7322-PA 242 CG7322-PA 1..242 1..242 1214 100 Plus
CG3699-PA 251 CG3699-PA 3..244 5..238 339 37.2 Plus
CG31549-PB 257 CG31549-PB 7..250 8..238 326 35.7 Plus