Clone Sequence Records
BO13884.3prime Sequence
763 bp (758 high quality bases) assembled on 2006-05-08
> BO13884.3prime
ATGGTCTAGAAAGCTTGCGGAAACGGAATATCCACCTTCGAGCAGGATGT
GGTGGCCGTTCACGAAGCTCGACTTGCTGCTCAGCAGATAGCCGGTGGCG
TCCACCACCTCCTGCACCTCGCAGAACCGATTCAGCGGTATGTGGGCCAG
CAGCGGTCCACTCTTGGCGGGATCCGACCAATTGTCGGCGCCCATTTTGG
TCAGCACCACGGTGGGATTAACGGAATTGACGCGAATTTTGCGCGGACCC
AGCTCCAAGGCCAGCGACTTGGTCAGCGAATCGAGGGCCGCCTTGGTGGC
ACTGTAGGCCGTGTGGCCGCCAAAGGATCGGGATGACGCTATCGAGGACA
CGTTGACAATTGAGGCTCCGTCTTTCAAGCGGGGCAGCAGAGATTGGGTG
ACATTGAACACCGCCTTGATGTTCACATCGAAGTGGGTGTCGAAATCCTG
TTCGGTGAGCTCCTCGAATGGCTTGATGATGGCCACGCCGGCGTTGTTGA
CCAGACCGTCCAGCAGAGGCACCTTCGCCAGCCCCTCACGCACCGCCTGC
CAGCCGCTGAGATCCAATTGCAGCGGCTGGATGTGCACCGGATCGAAGGC
CACCAGCTGCTGGAGCTGCTCTGGCTTCCTGGCCACTGCGATGACGGTGG
CACCCGCGGAGGCCAACTGCTTGACCAACGCCTGGCCAATACCGGCCCCG
GCTCCGGTCACCAAGATCACCTTGCCCGCGAGATCTGTCCACATGTCGAC
TGATAACTTCGTA
BO13884.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7322-PA | 729 | CG7322-RA | 1..726 | 744..19 | 3630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:28:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7322-RC | 1183 | CG7322-RC | 382..1107 | 744..19 | 3630 | 100 | Minus |
CG7322-RB | 877 | CG7322-RB | 76..801 | 744..19 | 3630 | 100 | Minus |
CG7322-RA | 934 | CG7322-RA | 66..791 | 744..19 | 3630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:28:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18856016..18856437 | 19..440 | 2095 | 99.8 | Plus |
X | 23542271 | X | 18857069..18857376 | 437..744 | 1540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:28:32 has no hits.
BO13884.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:39 Download gff for
BO13884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-PA | 1..729 | 15..744 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:06 Download gff for
BO13884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-PA | 1..729 | 15..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:38 Download gff for
BO13884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 61..795 | 14..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:21:36 Download gff for
BO13884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 61..795 | 14..749 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:21:36 Download gff for
BO13884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18857069..18857381 | 437..749 | 99 | | Plus |
X | 18856012..18856433 | 14..436 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:38 Download gff for
BO13884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18751102..18751414 | 437..749 | 99 | | Plus |
arm_X | 18750045..18750466 | 14..436 | 99 | <- | Plus |
BO13884.5prime Sequence
259 bp (171 high quality bases) assembled on 2006-05-08
> BO13884.5prime
GAAGTTATCAGTCGACATGTGGACAGATCTCGCGGGCAAGGTGATCTTGG
TGACCGGAGCCGGGGCCGGTATTGGCCAGGCGTTGGTCAAGCAGTTGGCC
TCCGCGGGTGCCACCGTCATCGCAGTGGCCAGGAAGCCAGAGCAGCTCCC
GCAGCTGGTGGCCTTCGATCCGGTGCACATCCAGCCGCTGCAATTGGATC
TCAGCGGCTGGCAGGCGGTGCGTGAGGAGCTGGCGAACGTGCCTCTGCTG
GACGGTCTG
BO13884.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7322-PA | 729 | CG7322-RA | 1..243 | 17..259 | 1140 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7322-RC | 1183 | CG7322-RC | 382..624 | 17..259 | 1170 | 98.8 | Plus |
CG7322-RB | 877 | CG7322-RB | 76..318 | 17..259 | 1170 | 98.8 | Plus |
CG7322-RA | 934 | CG7322-RA | 66..308 | 17..259 | 1170 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18857134..18857376 | 259..17 | 1170 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:38:12 has no hits.
BO13884.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:40 Download gff for
BO13884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-PA | 1..243 | 17..259 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:07 Download gff for
BO13884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-PA | 1..243 | 17..259 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:04:31 Download gff for
BO13884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 61..308 | 12..259 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:06 Download gff for
BO13884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 61..308 | 12..259 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:06 Download gff for
BO13884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18857134..18857381 | 12..259 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:04:31 Download gff for
BO13884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18751167..18751414 | 12..259 | 97 | | Minus |
BO13884.complete Sequence
760 bp assembled on 2006-10-11
GenBank Submission: FJ638721
> BO13884.complete
GAAGTTATCAGTCGACATGTGGACAGATCTCGCGGGCAAGGTGATCTTGG
TGACCGGAGCCGGGGCCGGTATTGGCCAGGCGTTGGTCAAGCAGTTGGCC
TCCGCGGGTGCCACCGTCATCGCAGTGGCCAGGAAGCCAGAGCAGCTCCA
GCAGCTGGTGGCCTTCGATCCGGTGCACATCCAGCCGCTGCAATTGGATC
TCAGCGGCTGGCAGGCGGTGCGTGAGGGGCTGGCGAAGGTGCCTCTGCTG
GACGGTCTGGTCAACAACGCCGGCGTGGCCATCATCAAGCCATTCGAGGA
GCTCACCGAACAGGATTTCGACACCCACTTCGATGTGAACATCAAGGCGG
TGTTCAATGTCACCCAATCTCTGCTGCCCCGCTTGAAAGACGGAGCCTCA
ATTGTCAACGTGTCCTCGATAGCGTCATCCCGATCCTTTGGCGGCCACAC
GGCCTACAGTGCCACCAAGGCGGCCCTCGATTCGCTGACCAAGTCGCTGG
CCTTGGAGCTGGGTCCGCGCAAAATTCGCGTCAATTCCGTTAATCCCACC
GTGGTGCTGACCAAAATGGGCGCCGACAATTGGTCGGATCCCGCCAAGAG
TGGACCGCTGCTGGCCCACATACCGCTGAATCGGTTCTGCGAGGTGCAGG
AGGTGGTGGACGCCACCGGCTATCTGCTGAGCAGCAAGTCGAGCTTCGTG
AACGGCCACCACATCCTGCTCGAAGGTGGATATTCCGTTTCCGCAAGCTT
TCTAGACCAT
BO13884.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7322-RC | 729 | CG7322-PC | 1..726 | 17..742 | 3630 | 100 | Plus |
CG7322-RB | 729 | CG7322-PB | 1..726 | 17..742 | 3630 | 100 | Plus |
CG7322-RA | 729 | CG7322-PA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7322-RC | 1183 | CG7322-RC | 382..1107 | 17..742 | 3630 | 100 | Plus |
CG7322-RB | 877 | CG7322-RB | 76..801 | 17..742 | 3630 | 100 | Plus |
CG7322-RA | 934 | CG7322-RA | 66..791 | 17..742 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18856016..18856437 | 742..321 | 2095 | 99.8 | Minus |
X | 23542271 | X | 18857069..18857376 | 324..17 | 1540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:47:37 has no hits.
BO13884.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:45 Download gff for
BO13884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 1..729 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:49 Download gff for
BO13884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 71..805 | 12..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:38 Download gff for
BO13884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 66..791 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:45 Download gff for
BO13884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 71..805 | 12..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:37 Download gff for
BO13884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 66..791 | 17..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:37 Download gff for
BO13884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18856014..18856433 | 325..744 | 99 | <- | Minus |
X | 18857069..18857376 | 17..324 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:38 Download gff for
BO13884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18750047..18750466 | 325..744 | 99 | <- | Minus |
arm_X | 18751102..18751409 | 17..324 | 100 | | Minus |
BO13884.pep Sequence
Translation from 16 to 760
> BO13884.pep
MWTDLAGKVILVTGAGAGIGQALVKQLASAGATVIAVARKPEQLQQLVAF
DPVHIQPLQLDLSGWQAVREGLAKVPLLDGLVNNAGVAIIKPFEELTEQD
FDTHFDVNIKAVFNVTQSLLPRLKDGASIVNVSSIASSRSFGGHTAYSAT
KAALDSLTKSLALELGPRKIRVNSVNPTVVLTKMGADNWSDPAKSGPLLA
HIPLNRFCEVQEVVDATGYLLSSKSSFVNGHHILLEGGYSVSASFLDH
BO13884.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7322-PC | 242 | CG7322-PC | 1..242 | 1..242 | 1214 | 100 | Plus |
CG7322-PB | 242 | CG7322-PB | 1..242 | 1..242 | 1214 | 100 | Plus |
CG7322-PA | 242 | CG7322-PA | 1..242 | 1..242 | 1214 | 100 | Plus |
CG3699-PA | 251 | CG3699-PA | 3..244 | 5..238 | 339 | 37.2 | Plus |
CG31549-PB | 257 | CG31549-PB | 7..250 | 8..238 | 326 | 35.7 | Plus |