Clone Sequence Records
BO13889.3prime Sequence
707 bp (706 high quality bases) assembled on 2006-05-08
> BO13889.3prime
ATGGTCTAGAAAGCTTGCGGGAAGCTCCTTCTTAAAGATGTTCCATTTCC
AGCTCCATTGATTTTCCAGACTGATCAACTGCTGGTAGGAAGCATAGTCA
TCCTTTGCGAACTCCTTCAGCCGGGCCAGCTGCATCATGGCCTCCTCGGT
GGAATAGATAGGCTCTATCAGAGTCACGGGGTATGGCTCATCACAATCGT
CCTTATTCGAGATGGGTTCGCTTTTCACCAGAATCGCCTCGAACTCCTGC
AGATCCAGGCTGTCACCGGTGTCATTGTATCGGACGTTGTGTCGCTTTCG
CCATTTCTCCAGCCATCCGGAGGAGGCAGAGAAATTGGAGTGGCCCAGCT
CCACAGCTAACTGCTTGGCCTTCTTCCGCACCATTTCCCCCGATATGGGT
ATATTCTCGGTACGGACACGGGAGAACCAATCAAAGCACATCTCATCGAT
TTGGGCGCCCCGCTGAGAGAGGGGATTCCTCCGCATCTGATTCAACTTAA
GTTCTCCACTCAACAGACCCTCTTTAATCGACTGTTTGTGCTTCAAAATG
TCTGCTGCTTGTGTCTTTCCAATGTTAAACCTCTTGGCCAGATCCCGAAC
CGATAGCTTGTTTCGCTCCTGGGACTGGATTACCTCCATTTTCTCTTCCA
AAGTGAGCGAGGTTCTAGGTTTTCTGACTCTTCCCGATGGCATGTCGACT
GATAACT
BO13889.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12346-PA | 678 | cag-RA | 1..675 | 693..19 | 3375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cag-RB | 1025 | CG12346-RB | 147..821 | 693..19 | 3375 | 100 | Minus |
| cag-RA | 1324 | CG12346-RA | 446..1120 | 693..19 | 3375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:15:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10893238..10893801 | 19..582 | 2820 | 100 | Plus |
| 2R | 25286936 | 2R | 10893855..10893969 | 579..693 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 04:15:11 has no hits.
BO13889.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:43 Download gff for
BO13889.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-PA | 1..678 | 16..693 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:11 Download gff for
BO13889.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12346-PA | 1..678 | 16..693 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:03:23 Download gff for
BO13889.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 446..1120 | 19..693 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:45:16 Download gff for
BO13889.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 446..1120 | 19..693 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:45:16 Download gff for
BO13889.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10893238..10893799 | 19..580 | 100 | <- | Plus |
| 2R | 10893857..10893969 | 581..693 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:03:23 Download gff for
BO13889.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6780743..6781304 | 19..580 | 100 | <- | Plus |
| arm_2R | 6781362..6781474 | 581..693 | 100 | | Plus |
BO13889.5prime Sequence
707 bp (706 high quality bases) assembled on 2006-05-08
> BO13889.5prime
GAAGTTATCAGTCGACATGCCATCGGGAAGAGTCAGAAAACCTAGAACCT
CGCTCACTTTGGAAGAGAAAATGGAGGTAATCCAGTCCCAGGAGCGAAAC
AAGCTATCGGTTCGGGATCTGGCCAAGAGGTTTAACATTGGAAAGACACA
AGCAGCAGACATTTTGAAGCACAAACAGTCGATTAAAGAGGGTCTGTTGA
GTGGAGAACTTAAGTTGAATCAGATGCGGAGGAATCCCCTCTCTCAGCGG
GGCGCCCAAATCGATGAGATGTGCTTTGATTGGTTCTCCCGTGTCCGTAC
CGAGAATATACCCATATCGGGGGAAATGGTGCGGAAGAAGGCCAAGCAGT
TAGCTGTGGAGCTGGGCCACTCCAATTTCTCTGCCTCCTCCGGATGGCTG
GAGAAATGGCGAAAGCGACACAACGTCCGATACAATGACACCGGTGACAG
CCTGGATCTGCAGGAGTTCGAGGCGATTCTGGTGAAAAGCGAACCCATCT
CGAATAAGGACGATTGTGATGAGCCATACCCCGTGACTCTGATAGAGCCT
ATCTATTCCACCGAGGAGGCCATGATGCAGCTGGCCCGGCTGAAGGAGTT
CGCAAAGGATGACTATGCTTCCTACCAGCAGTTGATCAGTCTGGAAAATC
AATGGAGCTGGAAATGGAACATCTTTAAGAAGGAGCTTCCCGCAAGCTTT
CTAGACC
BO13889.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12346-PA | 678 | cag-RA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cag-RB | 1025 | CG12346-RB | 147..821 | 17..691 | 3375 | 100 | Plus |
| cag-RA | 1324 | CG12346-RA | 446..1120 | 17..691 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10893238..10893801 | 691..128 | 2820 | 100 | Minus |
| 2R | 25286936 | 2R | 10893855..10893969 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:03:18 has no hits.
BO13889.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:44 Download gff for
BO13889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-PA | 1..678 | 17..694 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:12 Download gff for
BO13889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12346-PA | 1..678 | 17..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:35:11 Download gff for
BO13889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 446..1120 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:42:56 Download gff for
BO13889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 446..1120 | 17..691 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:42:56 Download gff for
BO13889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10893238..10893799 | 130..691 | 100 | <- | Minus |
| 2R | 10893857..10893969 | 17..129 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:35:11 Download gff for
BO13889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6780743..6781304 | 130..691 | 100 | <- | Minus |
| arm_2R | 6781362..6781474 | 17..129 | 100 | | Minus |
BO13889.complete Sequence
709 bp assembled on 2006-10-11
GenBank Submission: FJ632970
> BO13889.complete
GAAGTTATCAGTCGACATGCCATCGGGAAGAGTCAGAAAACCTAGAACCT
CGCTCACTTTGGAAGAGAAAATGGAGGTAATCCAGTCCCAGGAGCGAAAC
AAGCTATCGGTTCGGGATCTGGCCAAGAGGTTTAACATTGGAAAGACACA
AGCAGCAGACATTTTGAAGCACAAACAGTCGATTAAAGAGGGTCTGTTGA
GTGGAGAACTTAAGTTGAATCAGATGCGGAGGAATCCCCTCTCTCAGCGG
GGCGCCCAAATCGATGAGATGTGCTTTGATTGGTTCTCCCGTGTCCGTAC
CGAGAATATACCCATATCGGGGGAAATGGTGCGGAAGAAGGCCAAGCAGT
TAGCTGTGGAGCTGGGCCACTCCAATTTCTCTGCCTCCTCCGGATGGCTG
GAGAAATGGCGAAAGCGACACAACGTCCGATACAATGACACCGGTGACAG
CCTGGATCTGCAGGAGTTCGAGGCGATTCTGGTGAAAAGCGAACCCATCT
CGAATAAGGACGATTGTGATGAGCCATACCCCGTGACTCTGATAGAGCCT
ATCTATTCCACCGAGGAGGCCATGATGCAGCTGGCCCGGCTGAAGGAGTT
CGCAAAGGATGACTATGCTTCCTACCAGCAGTTGATCAGTCTGGAAAATC
AATGGAGCTGGAAATGGAACATCTTTAAGAAGGAGCTTCCCGCAAGCTTT
CTAGACCAT
BO13889.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cag-RB | 678 | CG12346-PB | 1..675 | 17..691 | 3375 | 100 | Plus |
| cag-RA | 678 | CG12346-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cag-RB | 1025 | CG12346-RB | 147..821 | 17..691 | 3375 | 100 | Plus |
| cag-RA | 1324 | CG12346-RA | 446..1120 | 17..691 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10893238..10893801 | 691..128 | 2820 | 100 | Minus |
| 2R | 25286936 | 2R | 10893855..10893969 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:39:45 has no hits.
BO13889.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:46 Download gff for
BO13889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 1..678 | 17..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:50 Download gff for
BO13889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 392..1066 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:48 Download gff for
BO13889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 446..1120 | 17..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:46 Download gff for
BO13889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 392..1066 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:08 Download gff for
BO13889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 446..1120 | 17..693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:08 Download gff for
BO13889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10893234..10893799 | 130..693 | 99 | <- | Minus |
| 2R | 10893857..10893969 | 17..129 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:48 Download gff for
BO13889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6780739..6781304 | 130..693 | 99 | <- | Minus |
| arm_2R | 6781362..6781474 | 17..129 | 100 | | Minus |
BO13889.pep Sequence
Translation from 16 to 709
> BO13889.pep
MPSGRVRKPRTSLTLEEKMEVIQSQERNKLSVRDLAKRFNIGKTQAADIL
KHKQSIKEGLLSGELKLNQMRRNPLSQRGAQIDEMCFDWFSRVRTENIPI
SGEMVRKKAKQLAVELGHSNFSASSGWLEKWRKRHNVRYNDTGDSLDLQE
FEAILVKSEPISNKDDCDEPYPVTLIEPIYSTEEAMMQLARLKEFAKDDY
ASYQQLISLENQWSWKWNIFKKELPASFLDH
BO13889.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cag-PB | 225 | CG12346-PB | 1..225 | 1..225 | 1169 | 100 | Plus |
| cag-PA | 225 | CG12346-PA | 1..225 | 1..225 | 1169 | 100 | Plus |
