Clone Sequence Records
BO13892.3prime Sequence
566 bp (565 high quality bases) assembled on 2006-05-08
> BO13892.3prime
ATGGTCTAGAAAGCTTGCGTGGTGTCCCTGGGCTTCGGCCTCCAGCTGCT
CCTTGGACTTGTAGCCGACCTGCTCCTCGGGAGTGTGGGGCCAGAAGGTA
GGCTTGTTGAGGGGATCGAGTGCGCTATCGGGGAATGCGTCGCGGTAGTC
CTCCATGGTCATCTGGTCGTAGGGCAGCAGAGACTTGAGATGGGCGATCT
CCTTTTGGTAGTTCTGAATGCGCTGCTCCGAGGCCTTCTTGTAGGCATCG
ATTTCGCTCTGCGACGCCTTGATCTCGGCATCCACCTGGGACGACACCTT
GTCCTGGGGATAGGGCACCTTCAGGGCTTCGTACTGCTTCTGGAAGCTAT
CGACGAGTCCGGCCACTGGCACAAGCTTCTTGTAGTTGGCCCAATCGATC
TGGGGTGGGCACTCGGGATTGGCCAGCACGGCGCGCACATAGATGTCCGA
CTTGGTCTTGAAGGCGCCGAAGCTGCTCTTCTGGTTGGCGGGCACGCGCT
CGGCGAGAGCGGACCAGTTGATCGAGGATTGGGCGATACGGCGGGCGGCC
ATGTCGACTGATAACT
BO13892.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6030-PB | 537 | ATPsyn-d-RB | 1..534 | 552..19 | 2645 | 99.8 | Minus |
CG6030-PA | 537 | ATPsyn-d-RA | 1..534 | 552..19 | 2645 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-d-RC | 950 | CG6030-RC | 88..621 | 552..19 | 2655 | 99.8 | Minus |
ATPsyn-d-RA | 734 | CG6030-RA | 88..621 | 552..19 | 2655 | 99.8 | Minus |
ATPsyn-d-RB | 694 | CG6030-RB | 35..568 | 552..19 | 2655 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19095409..19095942 | 552..19 | 2655 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:29:29 has no hits.
BO13892.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:46 Download gff for
BO13892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6030-PA | 1..537 | 15..552 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:15 Download gff for
BO13892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6030-PA | 1..537 | 15..552 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:48 Download gff for
BO13892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RB | 33..584 | 15..566 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:21:43 Download gff for
BO13892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RB | 20..571 | 15..566 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:21:43 Download gff for
BO13892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19095397..19095945 | 15..563 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:48 Download gff for
BO13892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14921119..14921667 | 15..563 | 98 | | Minus |
BO13892.5prime Sequence
566 bp (565 high quality bases) assembled on 2006-05-08
> BO13892.5prime
GAAGTTATCAGTCGACATGGCCGCCCGCCGTATCGCCCAATCCTCGATCA
ACTGGTCCGCTCTCGCCGAGCGCGTGCCCGCCAACCAGAAGAGCAGCTTC
GGCGCCTTCAAGACCAAGTCGGACATCTATGTGCGCGCCGTGCTGGCCAA
TCCCGAGTGCCCACCCCAGATCGATTGGGCCAACTACAAGAAGCTTGTGC
CAGTGGCCGGACTCGTCGATAGCTTCCAGAAGCAGTACGAAGCCCTGAAG
GTGCCCTATCCCCAGGACAAGGTGTCGTCCCAGGTGGATGCCGAGATCAA
GGCGTCGCAGAGCGAAATCGATGCCTACAAGAAGGCCTCGGAGCAGCGCA
TTCAGAACTACCAAAAGGAGATCGCCCATCTCAAGTCTCTGCTGCCCTAC
GACCAGATGACCATGGAGGACTACCGCGACGCATTCCCCGATAGCGCACT
CGATCCCCTCAACAAGCCTACCTTCTGGCCCCACACTCCCGAGGAGCAGG
TCGGCTACAAGTCCAAGGAGCAGCTGGAGGCCGAAGCCCAGGGACACCAC
GCAAGCTTTCTAGACC
BO13892.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6030-PB | 537 | ATPsyn-d-RB | 1..534 | 17..550 | 2645 | 99.8 | Plus |
CG6030-PA | 537 | ATPsyn-d-RA | 1..534 | 17..550 | 2645 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-d-RC | 950 | CG6030-RC | 88..621 | 17..550 | 2655 | 99.8 | Plus |
ATPsyn-d-RA | 734 | CG6030-RA | 88..621 | 17..550 | 2655 | 99.8 | Plus |
ATPsyn-d-RB | 694 | CG6030-RB | 35..568 | 17..550 | 2655 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19095409..19095942 | 17..550 | 2655 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:07:03 has no hits.
BO13892.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:47 Download gff for
BO13892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6030-PA | 1..537 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:16 Download gff for
BO13892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6030-PA | 1..537 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:35:31 Download gff for
BO13892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RB | 32..584 | 2..554 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:57:01 Download gff for
BO13892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RB | 19..571 | 2..554 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:57:01 Download gff for
BO13892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19095397..19095945 | 6..554 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:35:31 Download gff for
BO13892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14921119..14921667 | 6..554 | 98 | | Plus |
BO13892.complete Sequence
568 bp assembled on 2006-10-11
GenBank Submission: FJ632971
> BO13892.complete
GAAGTTATCAGTCGACATGGCCGCCCGCCGTATCGCCCAATCCTCGATCA
ACTGGTCCGCTCTCGCCGAGCGCGTGCCCGCCAACCAGAAGAGCAGCTTC
GGCGCCTTCAAGACCAAGTCGGACATCTATGTGCGCGCCGTGCTGGCCAA
TCCCGAGTGCCCACCCCAGATCGATTGGGCCAACTACAAGAAGCTTGTGC
CAGTGGCCGGACTCGTCGATAGCTTCCAGAAGCAGTACGAAGCCCTGAAG
GTGCCCTATCCCCAGGACAAGGTGTCGTCCCAGGTGGATGCCGAGATCAA
GGCGTCGCAGAGCGAAATCGATGCCTACAAGAAGGCCTCGGAGCAGCGCA
TTCAGAACTACCAAAAGGAGATCGCCCATCTCAAGTCTCTGCTGCCCTAC
GACCAGATGACCATGGAGGACTACCGCGACGCATTCCCCGATAGCGCACT
CGATCCCCTCAACAAGCCTACCTTCTGGCCCCACACTCCCGAGGAGCAGG
TCGGCTACAAGTCCAAGGAGCAGCTGGAGGCCGAAGCCCAGGGACACCAC
GCAAGCTTTCTAGACCAT
BO13892.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-d-RC | 537 | CG6030-PC | 1..534 | 17..550 | 2655 | 99.8 | Plus |
ATPsyn-d-RA | 537 | CG6030-PA | 1..534 | 17..550 | 2655 | 99.8 | Plus |
ATPsyn-d-RB | 537 | CG6030-PB | 1..534 | 17..550 | 2655 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-d-RC | 950 | CG6030-RC | 88..621 | 17..550 | 2655 | 99.8 | Plus |
ATPsyn-d-RA | 734 | CG6030-RA | 88..621 | 17..550 | 2655 | 99.8 | Plus |
ATPsyn-d-RB | 694 | CG6030-RB | 35..568 | 17..550 | 2655 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19095409..19095942 | 17..550 | 2655 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:37:02 has no hits.
BO13892.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:47 Download gff for
BO13892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RA | 1..537 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:52 Download gff for
BO13892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RA | 66..614 | 6..554 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:08 Download gff for
BO13892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RB | 48..581 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:47 Download gff for
BO13892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RA | 66..614 | 6..554 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:59 Download gff for
BO13892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-d-RB | 35..568 | 17..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:59 Download gff for
BO13892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19095409..19095942 | 17..552 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:08 Download gff for
BO13892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14921131..14921664 | 17..552 | 99 | | Plus |
BO13892.pep Sequence
Translation from 16 to 568
> BO13892.pep
MAARRIAQSSINWSALAERVPANQKSSFGAFKTKSDIYVRAVLANPECPP
QIDWANYKKLVPVAGLVDSFQKQYEALKVPYPQDKVSSQVDAEIKASQSE
IDAYKKASEQRIQNYQKEIAHLKSLLPYDQMTMEDYRDAFPDSALDPLNK
PTFWPHTPEEQVGYKSKEQLEAEAQGHHASFLDH
BO13892.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-d-PC | 178 | CG6030-PC | 1..178 | 1..178 | 929 | 100 | Plus |
ATPsyn-d-PA | 178 | CG6030-PA | 1..178 | 1..178 | 929 | 100 | Plus |
ATPsyn-d-PB | 178 | CG6030-PB | 1..178 | 1..178 | 929 | 100 | Plus |
CG7813-PA | 734 | CG7813-PA | 19..200 | 4..178 | 241 | 33.7 | Plus |