Clone BO13892 Report

Search the DGRC for BO13892

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptATPsyn-d-RA
Protein status:BO13892.pep: validated full length
Sequenced Size:568

Clone Sequence Records

BO13892.3prime Sequence

566 bp (565 high quality bases) assembled on 2006-05-08

> BO13892.3prime
ATGGTCTAGAAAGCTTGCGTGGTGTCCCTGGGCTTCGGCCTCCAGCTGCT
CCTTGGACTTGTAGCCGACCTGCTCCTCGGGAGTGTGGGGCCAGAAGGTA
GGCTTGTTGAGGGGATCGAGTGCGCTATCGGGGAATGCGTCGCGGTAGTC
CTCCATGGTCATCTGGTCGTAGGGCAGCAGAGACTTGAGATGGGCGATCT
CCTTTTGGTAGTTCTGAATGCGCTGCTCCGAGGCCTTCTTGTAGGCATCG
ATTTCGCTCTGCGACGCCTTGATCTCGGCATCCACCTGGGACGACACCTT
GTCCTGGGGATAGGGCACCTTCAGGGCTTCGTACTGCTTCTGGAAGCTAT
CGACGAGTCCGGCCACTGGCACAAGCTTCTTGTAGTTGGCCCAATCGATC
TGGGGTGGGCACTCGGGATTGGCCAGCACGGCGCGCACATAGATGTCCGA
CTTGGTCTTGAAGGCGCCGAAGCTGCTCTTCTGGTTGGCGGGCACGCGCT
CGGCGAGAGCGGACCAGTTGATCGAGGATTGGGCGATACGGCGGGCGGCC
ATGTCGACTGATAACT

BO13892.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6030-PB 537 ATPsyn-d-RB 1..534 552..19 2645 99.8 Minus
CG6030-PA 537 ATPsyn-d-RA 1..534 552..19 2645 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-d-RC 950 CG6030-RC 88..621 552..19 2655 99.8 Minus
ATPsyn-d-RA 734 CG6030-RA 88..621 552..19 2655 99.8 Minus
ATPsyn-d-RB 694 CG6030-RB 35..568 552..19 2655 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19095409..19095942 552..19 2655 99.8 Minus
Blast to na_te.dros performed on 2015-02-08 12:29:29 has no hits.

BO13892.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:46 Download gff for BO13892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6030-PA 1..537 15..552 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:15 Download gff for BO13892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6030-PA 1..537 15..552 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:48 Download gff for BO13892.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-d-RB 33..584 15..566 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:21:43 Download gff for BO13892.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-d-RB 20..571 15..566 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:21:43 Download gff for BO13892.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19095397..19095945 15..563 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:48 Download gff for BO13892.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14921119..14921667 15..563 98   Minus

BO13892.5prime Sequence

566 bp (565 high quality bases) assembled on 2006-05-08

> BO13892.5prime
GAAGTTATCAGTCGACATGGCCGCCCGCCGTATCGCCCAATCCTCGATCA
ACTGGTCCGCTCTCGCCGAGCGCGTGCCCGCCAACCAGAAGAGCAGCTTC
GGCGCCTTCAAGACCAAGTCGGACATCTATGTGCGCGCCGTGCTGGCCAA
TCCCGAGTGCCCACCCCAGATCGATTGGGCCAACTACAAGAAGCTTGTGC
CAGTGGCCGGACTCGTCGATAGCTTCCAGAAGCAGTACGAAGCCCTGAAG
GTGCCCTATCCCCAGGACAAGGTGTCGTCCCAGGTGGATGCCGAGATCAA
GGCGTCGCAGAGCGAAATCGATGCCTACAAGAAGGCCTCGGAGCAGCGCA
TTCAGAACTACCAAAAGGAGATCGCCCATCTCAAGTCTCTGCTGCCCTAC
GACCAGATGACCATGGAGGACTACCGCGACGCATTCCCCGATAGCGCACT
CGATCCCCTCAACAAGCCTACCTTCTGGCCCCACACTCCCGAGGAGCAGG
TCGGCTACAAGTCCAAGGAGCAGCTGGAGGCCGAAGCCCAGGGACACCAC
GCAAGCTTTCTAGACC

BO13892.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6030-PB 537 ATPsyn-d-RB 1..534 17..550 2645 99.8 Plus
CG6030-PA 537 ATPsyn-d-RA 1..534 17..550 2645 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-d-RC 950 CG6030-RC 88..621 17..550 2655 99.8 Plus
ATPsyn-d-RA 734 CG6030-RA 88..621 17..550 2655 99.8 Plus
ATPsyn-d-RB 694 CG6030-RB 35..568 17..550 2655 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19095409..19095942 17..550 2655 99.8 Plus
Blast to na_te.dros performed on 2015-02-13 08:07:03 has no hits.

BO13892.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:47 Download gff for BO13892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6030-PA 1..537 17..554 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:16 Download gff for BO13892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6030-PA 1..537 17..554 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:35:31 Download gff for BO13892.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-d-RB 32..584 2..554 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:57:01 Download gff for BO13892.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-d-RB 19..571 2..554 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:57:01 Download gff for BO13892.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19095397..19095945 6..554 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:35:31 Download gff for BO13892.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14921119..14921667 6..554 98   Plus

BO13892.complete Sequence

568 bp assembled on 2006-10-11

GenBank Submission: FJ632971

> BO13892.complete
GAAGTTATCAGTCGACATGGCCGCCCGCCGTATCGCCCAATCCTCGATCA
ACTGGTCCGCTCTCGCCGAGCGCGTGCCCGCCAACCAGAAGAGCAGCTTC
GGCGCCTTCAAGACCAAGTCGGACATCTATGTGCGCGCCGTGCTGGCCAA
TCCCGAGTGCCCACCCCAGATCGATTGGGCCAACTACAAGAAGCTTGTGC
CAGTGGCCGGACTCGTCGATAGCTTCCAGAAGCAGTACGAAGCCCTGAAG
GTGCCCTATCCCCAGGACAAGGTGTCGTCCCAGGTGGATGCCGAGATCAA
GGCGTCGCAGAGCGAAATCGATGCCTACAAGAAGGCCTCGGAGCAGCGCA
TTCAGAACTACCAAAAGGAGATCGCCCATCTCAAGTCTCTGCTGCCCTAC
GACCAGATGACCATGGAGGACTACCGCGACGCATTCCCCGATAGCGCACT
CGATCCCCTCAACAAGCCTACCTTCTGGCCCCACACTCCCGAGGAGCAGG
TCGGCTACAAGTCCAAGGAGCAGCTGGAGGCCGAAGCCCAGGGACACCAC
GCAAGCTTTCTAGACCAT

BO13892.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-d-RC 537 CG6030-PC 1..534 17..550 2655 99.8 Plus
ATPsyn-d-RA 537 CG6030-PA 1..534 17..550 2655 99.8 Plus
ATPsyn-d-RB 537 CG6030-PB 1..534 17..550 2655 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-d-RC 950 CG6030-RC 88..621 17..550 2655 99.8 Plus
ATPsyn-d-RA 734 CG6030-RA 88..621 17..550 2655 99.8 Plus
ATPsyn-d-RB 694 CG6030-RB 35..568 17..550 2655 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19095409..19095942 17..550 2655 99.8 Plus
Blast to na_te.dros performed on 2014-11-28 00:37:02 has no hits.

BO13892.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:47 Download gff for BO13892.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-d-RA 1..537 17..554 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:52 Download gff for BO13892.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-d-RA 66..614 6..554 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:08 Download gff for BO13892.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-d-RB 48..581 17..552 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:47 Download gff for BO13892.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-d-RA 66..614 6..554 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:59 Download gff for BO13892.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-d-RB 35..568 17..552 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:59 Download gff for BO13892.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19095409..19095942 17..552 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:08 Download gff for BO13892.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14921131..14921664 17..552 99   Plus

BO13892.pep Sequence

Translation from 16 to 568

> BO13892.pep
MAARRIAQSSINWSALAERVPANQKSSFGAFKTKSDIYVRAVLANPECPP
QIDWANYKKLVPVAGLVDSFQKQYEALKVPYPQDKVSSQVDAEIKASQSE
IDAYKKASEQRIQNYQKEIAHLKSLLPYDQMTMEDYRDAFPDSALDPLNK
PTFWPHTPEEQVGYKSKEQLEAEAQGHHASFLDH

BO13892.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-d-PC 178 CG6030-PC 1..178 1..178 929 100 Plus
ATPsyn-d-PA 178 CG6030-PA 1..178 1..178 929 100 Plus
ATPsyn-d-PB 178 CG6030-PB 1..178 1..178 929 100 Plus
CG7813-PA 734 CG7813-PA 19..200 4..178 241 33.7 Plus