Clone Sequence Records
BO13895.3prime Sequence
419 bp (418 high quality bases) assembled on 2006-05-08
> BO13895.3prime
ATGGTCTAGAAAGCTTGCCACCTTGCAGCTTTGCGGGGCGGCAAGGACGG
TCGACTGGCTGTGATTGTGGGTGTGCTCCAGCTCATGCTCGTGCTCGTGC
ATGTCCTCCTCGTCCTCGCAGATGCTGTCATGGTGCTTCCTTTGCTCCCG
CTTGCGCATGTAGTTGATGAGCGGCCGCTTCTTGTGCTCCTTGCAGAATG
GGCAGTCCTTGCGCATCTGCTTCTCGGACTTTATCTGCTTGCACTTTTCT
TGCACTCGACTGTAGCAGTCCTTGACCGCGTGTGAGGAAGTGGTGGACTC
CAGGGTACCATAGGGGAACTCCTCGTAGTCGCGGTAGTAGCCGCTGCGCA
TGGACCCGCCATATGCCATTGTGGTGTCGCTGACGCAGAATCCCCAAACA
TCCATGTCGACTGATAACT
BO13895.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10746-PA | 390 | fok-RA | 1..387 | 405..19 | 1935 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fok-RC | 1903 | CG43690-RC | 334..723 | 408..19 | 1950 | 100 | Minus |
fok-RA | 1205 | CG43690-RA | 334..723 | 408..19 | 1950 | 100 | Minus |
fok-RD | 696 | CG43690-RD | 334..493 | 408..249 | 800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20082786..20083017 | 19..250 | 1160 | 100 | Plus |
2L | 23513712 | 2L | 20084578..20084737 | 249..408 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:18:47 has no hits.
BO13895.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:48 Download gff for
BO13895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-PA | 1..390 | 16..405 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:17 Download gff for
BO13895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10746-PA | 1..390 | 16..405 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:57:18 Download gff for
BO13895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 327..723 | 19..413 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:40:18 Download gff for
BO13895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 327..723 | 19..413 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:40:18 Download gff for
BO13895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20082786..20083015 | 19..248 | 100 | <- | Plus |
2L | 20084578..20084739 | 249..413 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:57:18 Download gff for
BO13895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20082786..20083015 | 19..248 | 100 | <- | Plus |
arm_2L | 20084578..20084739 | 249..413 | 98 | | Plus |
BO13895.5prime Sequence
419 bp (418 high quality bases) assembled on 2006-05-08
> BO13895.5prime
GAAGTTATCAGTCGACATGGATGTTTGGGGATTCTGCGTCAGCGACACCA
CAATGGCATATGGCGGGTCCATGCGCAGCGGCTACTACCGCGACTACGAG
GAGTTCCCCTATGGTACCCTGGAGTCCACCACTTCCTCACACGCGGTCAA
GGACTGCTACAGTCGAGTGCAAGAAAAGTGCAAGCAGATAAAGTCCGAGA
AGCAGATGCGCAAGGACTGCCCATTCTGCAAGGAGCACAAGAAGCGGCCG
CTCATCAACTACATGCGCAAGCGGGAGCAAAGGAAGCACCATGACAGCAT
CTGCGAGGACGAGGAGGACATGCACGAGCACGAGCATGAGCTGGAGCACA
CCCACAATCACAGCCAGTCGACCGTCCTTGCCGCCCCGCAAAGCTGCAAG
GTGGCAAGCTTTCTAGACC
BO13895.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10746-PA | 390 | fok-RA | 1..387 | 17..403 | 1935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fok-RC | 1903 | CG43690-RC | 334..723 | 14..403 | 1950 | 100 | Plus |
fok-RA | 1205 | CG43690-RA | 334..723 | 14..403 | 1950 | 100 | Plus |
fok-RD | 696 | CG43690-RD | 334..493 | 14..173 | 800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20082786..20083017 | 403..172 | 1160 | 100 | Minus |
2L | 23513712 | 2L | 20084578..20084737 | 173..14 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:38:44 has no hits.
BO13895.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:49 Download gff for
BO13895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-PA | 1..390 | 17..406 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:19 Download gff for
BO13895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10746-PA | 1..390 | 17..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:39:04 Download gff for
BO13895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 327..723 | 9..403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:10 Download gff for
BO13895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 327..723 | 9..403 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:10 Download gff for
BO13895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20082786..20083015 | 174..403 | 100 | <- | Minus |
2L | 20084578..20084739 | 9..173 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:39:04 Download gff for
BO13895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20082786..20083015 | 174..403 | 100 | <- | Minus |
arm_2L | 20084578..20084739 | 9..173 | 98 | | Minus |
BO13895.complete Sequence
421 bp assembled on 2006-10-11
GenBank Submission: FJ632972
> BO13895.complete
GAAGTTATCAGTCGACATGGATGTTTGGGGATTCTGCGTCAGCGACACCA
CAATGGCATATGGCGGGTCCATGCGCAGCGGCTACTACCGCGACTACGAG
GAGTTCCCCTATGGTACCCTGGAGTCCACCACTTCCTCACACGCGGTCAA
GGACTGCTACAGTCGAGTGCAAGAAAAGTGCAAGCAGATAAAGTCCGAGA
AGCAGATGCGCAAGGACTGCCCATTCTGCAAGGAGCACAAGAAGCGGCCG
CTCATCAACTACATGCGCAAGCGGGAGCAAAGGAAGCACCATGACAGCAT
CTGCGAGGACGAGGAGGACATGCACGAGCACGAGCATGAGCTGGAGCACA
CCCACAATCACAGCCAGTCGACCGTCCTTGCCGCCCCGCAAAGCTGCAAG
GTGGCAAGCTTTCTAGACCAT
BO13895.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fok-RC | 390 | CG43690-PC | 1..387 | 17..403 | 1935 | 100 | Plus |
fok-RA | 390 | CG43690-PA | 1..387 | 17..403 | 1935 | 100 | Plus |
fok-RD | 312 | CG43690-PD | 1..157 | 17..173 | 785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fok-RC | 1903 | CG43690-RC | 334..723 | 14..403 | 1950 | 100 | Plus |
fok-RA | 1205 | CG43690-RA | 334..723 | 14..403 | 1950 | 100 | Plus |
fok-RD | 696 | CG43690-RD | 334..493 | 14..173 | 800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20082786..20083017 | 403..172 | 1160 | 100 | Minus |
2L | 23513712 | 2L | 20084578..20084737 | 173..14 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:52:55 has no hits.
BO13895.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:43 Download gff for
BO13895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 1..390 | 17..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:45 Download gff for
BO13895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 324..720 | 9..403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:32 Download gff for
BO13895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 337..723 | 17..405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:43 Download gff for
BO13895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 324..720 | 9..403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:19 Download gff for
BO13895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fok-RA | 337..723 | 17..405 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:19 Download gff for
BO13895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20082783..20083015 | 174..405 | 99 | <- | Minus |
2L | 20084578..20084734 | 17..173 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:32 Download gff for
BO13895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20082783..20083015 | 174..405 | 99 | <- | Minus |
arm_2L | 20084578..20084734 | 17..173 | 100 | | Minus |
BO13895.pep Sequence
Translation from 16 to 421
> BO13895.pep
MDVWGFCVSDTTMAYGGSMRSGYYRDYEEFPYGTLESTTSSHAVKDCYSR
VQEKCKQIKSEKQMRKDCPFCKEHKKRPLINYMRKREQRKHHDSICEDEE
DMHEHEHELEHTHNHSQSTVLAAPQSCKVASFLDH
BO13895.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fok-PC | 129 | CG43690-PC | 1..129 | 1..129 | 720 | 100 | Plus |
fok-PA | 129 | CG43690-PA | 1..129 | 1..129 | 720 | 100 | Plus |
fok-PD | 103 | CG43690-PD | 1..81 | 1..90 | 292 | 67.8 | Plus |