Clone BO13895 Report

Search the DGRC for BO13895

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:95
Vector:pDNR-Dual
Associated Gene/Transcriptfok-RA
Protein status:BO13895.pep: validated full length
Sequenced Size:421

Clone Sequence Records

BO13895.3prime Sequence

419 bp (418 high quality bases) assembled on 2006-05-08

> BO13895.3prime
ATGGTCTAGAAAGCTTGCCACCTTGCAGCTTTGCGGGGCGGCAAGGACGG
TCGACTGGCTGTGATTGTGGGTGTGCTCCAGCTCATGCTCGTGCTCGTGC
ATGTCCTCCTCGTCCTCGCAGATGCTGTCATGGTGCTTCCTTTGCTCCCG
CTTGCGCATGTAGTTGATGAGCGGCCGCTTCTTGTGCTCCTTGCAGAATG
GGCAGTCCTTGCGCATCTGCTTCTCGGACTTTATCTGCTTGCACTTTTCT
TGCACTCGACTGTAGCAGTCCTTGACCGCGTGTGAGGAAGTGGTGGACTC
CAGGGTACCATAGGGGAACTCCTCGTAGTCGCGGTAGTAGCCGCTGCGCA
TGGACCCGCCATATGCCATTGTGGTGTCGCTGACGCAGAATCCCCAAACA
TCCATGTCGACTGATAACT

BO13895.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10746-PA 390 fok-RA 1..387 405..19 1935 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
fok-RC 1903 CG43690-RC 334..723 408..19 1950 100 Minus
fok-RA 1205 CG43690-RA 334..723 408..19 1950 100 Minus
fok-RD 696 CG43690-RD 334..493 408..249 800 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20082786..20083017 19..250 1160 100 Plus
2L 23513712 2L 20084578..20084737 249..408 800 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:18:47 has no hits.

BO13895.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:48 Download gff for BO13895.3prime
Subject Subject Range Query Range Percent Splice Strand
fok-PA 1..390 16..405 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:17 Download gff for BO13895.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10746-PA 1..390 16..405 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:57:18 Download gff for BO13895.3prime
Subject Subject Range Query Range Percent Splice Strand
fok-RA 327..723 19..413 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:40:18 Download gff for BO13895.3prime
Subject Subject Range Query Range Percent Splice Strand
fok-RA 327..723 19..413 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:40:18 Download gff for BO13895.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20082786..20083015 19..248 100 <- Plus
2L 20084578..20084739 249..413 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:57:18 Download gff for BO13895.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20082786..20083015 19..248 100 <- Plus
arm_2L 20084578..20084739 249..413 98   Plus

BO13895.5prime Sequence

419 bp (418 high quality bases) assembled on 2006-05-08

> BO13895.5prime
GAAGTTATCAGTCGACATGGATGTTTGGGGATTCTGCGTCAGCGACACCA
CAATGGCATATGGCGGGTCCATGCGCAGCGGCTACTACCGCGACTACGAG
GAGTTCCCCTATGGTACCCTGGAGTCCACCACTTCCTCACACGCGGTCAA
GGACTGCTACAGTCGAGTGCAAGAAAAGTGCAAGCAGATAAAGTCCGAGA
AGCAGATGCGCAAGGACTGCCCATTCTGCAAGGAGCACAAGAAGCGGCCG
CTCATCAACTACATGCGCAAGCGGGAGCAAAGGAAGCACCATGACAGCAT
CTGCGAGGACGAGGAGGACATGCACGAGCACGAGCATGAGCTGGAGCACA
CCCACAATCACAGCCAGTCGACCGTCCTTGCCGCCCCGCAAAGCTGCAAG
GTGGCAAGCTTTCTAGACC

BO13895.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10746-PA 390 fok-RA 1..387 17..403 1935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
fok-RC 1903 CG43690-RC 334..723 14..403 1950 100 Plus
fok-RA 1205 CG43690-RA 334..723 14..403 1950 100 Plus
fok-RD 696 CG43690-RD 334..493 14..173 800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20082786..20083017 403..172 1160 100 Minus
2L 23513712 2L 20084578..20084737 173..14 800 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:38:44 has no hits.

BO13895.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:49 Download gff for BO13895.5prime
Subject Subject Range Query Range Percent Splice Strand
fok-PA 1..390 17..406 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:19 Download gff for BO13895.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10746-PA 1..390 17..406 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:39:04 Download gff for BO13895.5prime
Subject Subject Range Query Range Percent Splice Strand
fok-RA 327..723 9..403 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:10 Download gff for BO13895.5prime
Subject Subject Range Query Range Percent Splice Strand
fok-RA 327..723 9..403 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:10 Download gff for BO13895.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20082786..20083015 174..403 100 <- Minus
2L 20084578..20084739 9..173 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:39:04 Download gff for BO13895.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20082786..20083015 174..403 100 <- Minus
arm_2L 20084578..20084739 9..173 98   Minus

BO13895.complete Sequence

421 bp assembled on 2006-10-11

GenBank Submission: FJ632972

> BO13895.complete
GAAGTTATCAGTCGACATGGATGTTTGGGGATTCTGCGTCAGCGACACCA
CAATGGCATATGGCGGGTCCATGCGCAGCGGCTACTACCGCGACTACGAG
GAGTTCCCCTATGGTACCCTGGAGTCCACCACTTCCTCACACGCGGTCAA
GGACTGCTACAGTCGAGTGCAAGAAAAGTGCAAGCAGATAAAGTCCGAGA
AGCAGATGCGCAAGGACTGCCCATTCTGCAAGGAGCACAAGAAGCGGCCG
CTCATCAACTACATGCGCAAGCGGGAGCAAAGGAAGCACCATGACAGCAT
CTGCGAGGACGAGGAGGACATGCACGAGCACGAGCATGAGCTGGAGCACA
CCCACAATCACAGCCAGTCGACCGTCCTTGCCGCCCCGCAAAGCTGCAAG
GTGGCAAGCTTTCTAGACCAT

BO13895.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
fok-RC 390 CG43690-PC 1..387 17..403 1935 100 Plus
fok-RA 390 CG43690-PA 1..387 17..403 1935 100 Plus
fok-RD 312 CG43690-PD 1..157 17..173 785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
fok-RC 1903 CG43690-RC 334..723 14..403 1950 100 Plus
fok-RA 1205 CG43690-RA 334..723 14..403 1950 100 Plus
fok-RD 696 CG43690-RD 334..493 14..173 800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20082786..20083017 403..172 1160 100 Minus
2L 23513712 2L 20084578..20084737 173..14 800 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:52:55 has no hits.

BO13895.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:43 Download gff for BO13895.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 1..390 17..406 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:45 Download gff for BO13895.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 324..720 9..403 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:32 Download gff for BO13895.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 337..723 17..405 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:43 Download gff for BO13895.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 324..720 9..403 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:19 Download gff for BO13895.complete
Subject Subject Range Query Range Percent Splice Strand
fok-RA 337..723 17..405 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:19 Download gff for BO13895.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20082783..20083015 174..405 99 <- Minus
2L 20084578..20084734 17..173 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:32 Download gff for BO13895.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20082783..20083015 174..405 99 <- Minus
arm_2L 20084578..20084734 17..173 100   Minus

BO13895.pep Sequence

Translation from 16 to 421

> BO13895.pep
MDVWGFCVSDTTMAYGGSMRSGYYRDYEEFPYGTLESTTSSHAVKDCYSR
VQEKCKQIKSEKQMRKDCPFCKEHKKRPLINYMRKREQRKHHDSICEDEE
DMHEHEHELEHTHNHSQSTVLAAPQSCKVASFLDH

BO13895.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
fok-PC 129 CG43690-PC 1..129 1..129 720 100 Plus
fok-PA 129 CG43690-PA 1..129 1..129 720 100 Plus
fok-PD 103 CG43690-PD 1..81 1..90 292 67.8 Plus