Clone Sequence Records
BO13901.complete Sequence
967 bp assembled on 2010-02-09
GenBank Submission: FJ632973
> BO13901.complete
GAAGTTATCAGTCGACATGAATTTCGAAAGTCATCTGATTGTTTGCATTA
GTTTGCTTCTTCAATTACGGATGGGAGCAACTATGCCTATGGAACGGCCA
CTCCCCCCCTCTGTGTATGCACAGGCTAGGCATTGGAACGTGCTTGAAAC
AGTCGTAAATAATATGCGGATCACTAAAAGGCCGTGGATAGTTACAAAAA
CTAAACCGTGCGGTGAGGTGATTAGGGAAACCTACATGTTGAGCCCCAAC
GAAGAGGAACTCATAAGGAGAACGGAAGTCATGCTCTTGCAAGCTCAAGG
AAAATTGGAATGTTTACTTAGCCAGTTTCAACCGACATTACGACTTGGCA
GTGTCTACAATAATCCCTTTCTAAACCCGGTCGGTTTTGGTTTTCCTGAC
TATAACGTCTTCCAAAATTTTCCGTTTATCCCGGAATTTAAGCCGCAACG
TATTCCTCCCGAAGAAGATCGCAGTAATGAAAATAATCCTCGCCGAGAAG
ATCCGCGGGTAAATGAGCAGGATGCGTGGAATTTACGCCCTCAAGACGTC
CCCAAAGAAAATGAACACATTCCCAATAGTGAATCGGATAGTGATAGATG
GCTGCCAAATCCAACATCCACACACCGGCCTATCGTAACTTTGCCTACCC
TGGCACCCCCAAACTTGAAGGATACGGAGCCCATATGGGTTCCAGTCCCA
GAACCAACATCAACCGAGCGAAGTTCGGTCCCGCTGCCCACGCTCGCACC
CAAAGGCGACGGAACTGACTCGACAATCGATGACTTTTTGGCAAAGGTGG
ATCTCACTGTCGCGGACATCAAAGAGGAGGATGGCCAGGTGGTCACCACA
ATCGTGGACAAACAAGGACGCGTTCTAAGTGCCAGTTTTGCACTGAGCAA
TGAGAACGAACAAGGGGGTGCGGCAAACTATCAAAGTCGCACTGGAAAAG
CAAGCTTTCTAGACCAT
BO13901.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31769-RA | 936 | CG31769-PA | 1..933 | 17..949 | 4665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31769-RA | 1086 | CG31769-RA | 55..987 | 17..949 | 4665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14109696..14110575 | 949..70 | 4400 | 100 | Minus |
2L | 23513712 | 2L | 14110632..14110685 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:21:07 has no hits.
BO13901.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:16 Download gff for
BO13901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:22 Download gff for
BO13901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 55..983 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:28 Download gff for
BO13901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 55..983 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:44 Download gff for
BO13901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 55..983 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:24 Download gff for
BO13901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 55..983 | 17..945 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:24 Download gff for
BO13901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14109700..14110574 | 71..945 | 100 | <- | Minus |
2L | 14110632..14110685 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:28 Download gff for
BO13901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14109700..14110574 | 71..945 | 100 | <- | Minus |
arm_2L | 14110632..14110685 | 17..70 | 100 | | Minus |
BO13901.3prime Sequence
653 bp (536 high quality bases) assembled on 2006-05-08
> BO13901.3prime
ATGGTCTAGAAAGCTTGCTTTTCCAGTGCGACTTTGATAGTTTGCCGCAC
CCCCTTGTTCGTTCTCATTGCTCAGTGCAAAACTGGCACTTAGAACGCGT
CCTTGTTTGTCCACGATTGTGGTGACCACCTGGCCATCCTCCTCTTTGAT
GTCCGCGACAGTGAGATCCACCTTTGCCAAAAAGTCATCGATTGTCGAGT
CAGTTCCGTCGCCTTTGGGTGCGAGCGTGGGCAGCGGGACCGAACTTCGC
TCGGTTGATGTTGGTTCTGGGACTGGAACCCATATGGGCTCCGTATCCTT
CAAGTTTGGGGGTGCCAGGGTAGGCAAAGTTACGATAGGCCGGTGTGTGG
ATGTTGGATTTGGCAGCCATCTATCACTATCCGATTCACTATTGGGAATG
TGTTCATTTTCTTTGGGGACGTCTTGAGGGCGTAAATTCCACGCATCCTG
CTCATTTACCCGCGGATCTTCTCGGCGAGGAATATTTTCATTACTGCGAT
CTTCTTCGGGAGGAATACGTTGCGGCTAAAATTCCGGGGATAAACGGAAA
ATTTTGGAAGACGTTATAATCAGGAAAAACCAAACCGACCGGGTTTAAAA
AAGGGATTATTGTAGACACTGCCAAGTCGTAATGTCGGTTGAAACTGGCT
AAA
BO13901.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31769-PA | 936 | CG31769-RA | 414..933 | 538..19 | 2550 | 99.6 | Minus |
CG31769-PA | 936 | CG31769-RA | 302..354 | 652..600 | 265 | 100 | Minus |
CG31769-PA | 936 | CG31769-RA | 356..416 | 597..537 | 230 | 95 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31769-RA | 1086 | CG31769-RA | 356..987 | 652..19 | 3030 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14109696..14110327 | 19..652 | 2980 | 98.7 | Plus |
Blast to na_te.dros performed 2015-02-10 15:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 1739..1788 | 573..622 | 106 | 68 | Plus |
BO13901.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:50 Download gff for
BO13901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-PA | 304..936 | 16..650 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:20 Download gff for
BO13901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-PA | 304..936 | 16..650 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:16:26 Download gff for
BO13901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 358..987 | 19..650 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:00 Download gff for
BO13901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 358..987 | 19..650 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:00 Download gff for
BO13901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14109696..14110325 | 19..650 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:16:26 Download gff for
BO13901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14109696..14110325 | 19..650 | 98 | | Plus |
BO13901.5prime Sequence
720 bp (697 high quality bases) assembled on 2006-05-08
> BO13901.5prime
GAAGTTATCAGTCGACATGAATTTCGAAAGTCATCTGATTGTTTGCATTA
GTTTGCTTCTTCAATTACGGATGGGAGCAACTATGCCTATGGAACGGCCA
CTCCCCCCCTCTGTGTATGCACAGGCTAGGCATTGGAACGTGCTTGAAAC
AGTCGTAAATAATATGCGGATCACTAAAAGGCCGTGGATAGTTACAAAAA
CTAAACCGTGCGGTGAGGTGATTAGGGAAACCTACATGTTGAGCCCCAAC
GAAGAGGAACTCATAAGGAGAACGGAAGTCATGCTCTTGCAAGCTCAAGG
AAAATTGGAATGTTTACTTAGCCAGTTTCAACCGACATTACGACTTGGCA
GTGTCTACAATAATCCCTTTCTAAACCCGGTCGGTTTTGGTTTTCCTGAC
TATAACGTCTTCCAAAATTTTCCGTTTATCCCGGAATTTAAGCCGCAACG
TATTCCTCCCGAAGAAGATCGCAGTAATGAAAATAATCCTCGCCGAGAAG
ATCCGCGGGTAAATGAGCAGGATGCGTGGAATTTACGCCCTCAAGACGTC
CCCAAAGAAAATGAACACATTCCCAATAGTGAATCGGATAGTGATAGATG
GCTGCCAAATCCAACATCCACACACCGGCCTATCGTAACTTTGCCTACCC
TGGCACCCCCAAACTTGAAGGATACGGAGCCCATATGGGTTCCAGTCCCA
GAACCAACATCAACCGAGCG
BO13901.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31769-PA | 936 | CG31769-RA | 1..704 | 17..720 | 3520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:44:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31769-RA | 1086 | CG31769-RA | 55..758 | 17..720 | 3520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14109925..14110575 | 720..70 | 3255 | 100 | Minus |
2L | 23513712 | 2L | 14110632..14110685 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:44:42 has no hits.
BO13901.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:51 Download gff for
BO13901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-PA | 1..704 | 17..720 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:22 Download gff for
BO13901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-PA | 1..704 | 17..720 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:18:12 Download gff for
BO13901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 49..758 | 9..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:55:52 Download gff for
BO13901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 49..758 | 9..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:55:52 Download gff for
BO13901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14109925..14110574 | 71..720 | 100 | <- | Minus |
2L | 14110632..14110691 | 9..70 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:18:12 Download gff for
BO13901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14109925..14110574 | 71..720 | 100 | <- | Minus |
arm_2L | 14110632..14110691 | 9..70 | 93 | | Minus |
BO13901.pep Sequence
Translation from 16 to 967
> BO13901.pep
MNFESHLIVCISLLLQLRMGATMPMERPLPPSVYAQARHWNVLETVVNNM
RITKRPWIVTKTKPCGEVIRETYMLSPNEEELIRRTEVMLLQAQGKLECL
LSQFQPTLRLGSVYNNPFLNPVGFGFPDYNVFQNFPFIPEFKPQRIPPEE
DRSNENNPRREDPRVNEQDAWNLRPQDVPKENEHIPNSESDSDRWLPNPT
STHRPIVTLPTLAPPNLKDTEPIWVPVPEPTSTERSSVPLPTLAPKGDGT
DSTIDDFLAKVDLTVADIKEEDGQVVTTIVDKQGRVLSASFALSNENEQG
GAANYQSRTGKASFLDH
BO13901.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31769-PA | 311 | CG31769-PA | 1..311 | 1..311 | 1652 | 100 | Plus |
CG15293-PC | 333 | CG15293-PC | 1..318 | 1..295 | 226 | 26.2 | Plus |
CG15293-PA | 333 | CG15293-PA | 1..318 | 1..295 | 226 | 26.2 | Plus |