Clone BO13901 Report

Search the DGRC for BO13901

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:139
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG31769-RA
Protein status:BO13901.pep: Imported from assembly
Sequenced Size:967

Clone Sequence Records

BO13901.complete Sequence

967 bp assembled on 2010-02-09

GenBank Submission: FJ632973

> BO13901.complete
GAAGTTATCAGTCGACATGAATTTCGAAAGTCATCTGATTGTTTGCATTA
GTTTGCTTCTTCAATTACGGATGGGAGCAACTATGCCTATGGAACGGCCA
CTCCCCCCCTCTGTGTATGCACAGGCTAGGCATTGGAACGTGCTTGAAAC
AGTCGTAAATAATATGCGGATCACTAAAAGGCCGTGGATAGTTACAAAAA
CTAAACCGTGCGGTGAGGTGATTAGGGAAACCTACATGTTGAGCCCCAAC
GAAGAGGAACTCATAAGGAGAACGGAAGTCATGCTCTTGCAAGCTCAAGG
AAAATTGGAATGTTTACTTAGCCAGTTTCAACCGACATTACGACTTGGCA
GTGTCTACAATAATCCCTTTCTAAACCCGGTCGGTTTTGGTTTTCCTGAC
TATAACGTCTTCCAAAATTTTCCGTTTATCCCGGAATTTAAGCCGCAACG
TATTCCTCCCGAAGAAGATCGCAGTAATGAAAATAATCCTCGCCGAGAAG
ATCCGCGGGTAAATGAGCAGGATGCGTGGAATTTACGCCCTCAAGACGTC
CCCAAAGAAAATGAACACATTCCCAATAGTGAATCGGATAGTGATAGATG
GCTGCCAAATCCAACATCCACACACCGGCCTATCGTAACTTTGCCTACCC
TGGCACCCCCAAACTTGAAGGATACGGAGCCCATATGGGTTCCAGTCCCA
GAACCAACATCAACCGAGCGAAGTTCGGTCCCGCTGCCCACGCTCGCACC
CAAAGGCGACGGAACTGACTCGACAATCGATGACTTTTTGGCAAAGGTGG
ATCTCACTGTCGCGGACATCAAAGAGGAGGATGGCCAGGTGGTCACCACA
ATCGTGGACAAACAAGGACGCGTTCTAAGTGCCAGTTTTGCACTGAGCAA
TGAGAACGAACAAGGGGGTGCGGCAAACTATCAAAGTCGCACTGGAAAAG
CAAGCTTTCTAGACCAT

BO13901.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31769-RA 936 CG31769-PA 1..933 17..949 4665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31769-RA 1086 CG31769-RA 55..987 17..949 4665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14109696..14110575 949..70 4400 100 Minus
2L 23513712 2L 14110632..14110685 70..17 270 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:21:07 has no hits.

BO13901.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:16 Download gff for BO13901.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 1..936 17..952 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:22 Download gff for BO13901.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 55..983 17..945 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:28 Download gff for BO13901.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 55..983 17..945 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:44 Download gff for BO13901.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 55..983 17..945 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:24 Download gff for BO13901.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 55..983 17..945 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:24 Download gff for BO13901.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14109700..14110574 71..945 100 <- Minus
2L 14110632..14110685 17..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:28 Download gff for BO13901.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14109700..14110574 71..945 100 <- Minus
arm_2L 14110632..14110685 17..70 100   Minus

BO13901.3prime Sequence

653 bp (536 high quality bases) assembled on 2006-05-08

> BO13901.3prime
ATGGTCTAGAAAGCTTGCTTTTCCAGTGCGACTTTGATAGTTTGCCGCAC
CCCCTTGTTCGTTCTCATTGCTCAGTGCAAAACTGGCACTTAGAACGCGT
CCTTGTTTGTCCACGATTGTGGTGACCACCTGGCCATCCTCCTCTTTGAT
GTCCGCGACAGTGAGATCCACCTTTGCCAAAAAGTCATCGATTGTCGAGT
CAGTTCCGTCGCCTTTGGGTGCGAGCGTGGGCAGCGGGACCGAACTTCGC
TCGGTTGATGTTGGTTCTGGGACTGGAACCCATATGGGCTCCGTATCCTT
CAAGTTTGGGGGTGCCAGGGTAGGCAAAGTTACGATAGGCCGGTGTGTGG
ATGTTGGATTTGGCAGCCATCTATCACTATCCGATTCACTATTGGGAATG
TGTTCATTTTCTTTGGGGACGTCTTGAGGGCGTAAATTCCACGCATCCTG
CTCATTTACCCGCGGATCTTCTCGGCGAGGAATATTTTCATTACTGCGAT
CTTCTTCGGGAGGAATACGTTGCGGCTAAAATTCCGGGGATAAACGGAAA
ATTTTGGAAGACGTTATAATCAGGAAAAACCAAACCGACCGGGTTTAAAA
AAGGGATTATTGTAGACACTGCCAAGTCGTAATGTCGGTTGAAACTGGCT
AAA

BO13901.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31769-PA 936 CG31769-RA 414..933 538..19 2550 99.6 Minus
CG31769-PA 936 CG31769-RA 302..354 652..600 265 100 Minus
CG31769-PA 936 CG31769-RA 356..416 597..537 230 95 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31769-RA 1086 CG31769-RA 356..987 652..19 3030 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14109696..14110327 19..652 2980 98.7 Plus
Blast to na_te.dros performed 2015-02-10 15:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 1739..1788 573..622 106 68 Plus

BO13901.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:50 Download gff for BO13901.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31769-PA 304..936 16..650 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:20 Download gff for BO13901.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31769-PA 304..936 16..650 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:16:26 Download gff for BO13901.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 358..987 19..650 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:00 Download gff for BO13901.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 358..987 19..650 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:00 Download gff for BO13901.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 14109696..14110325 19..650 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:16:26 Download gff for BO13901.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14109696..14110325 19..650 98   Plus

BO13901.5prime Sequence

720 bp (697 high quality bases) assembled on 2006-05-08

> BO13901.5prime
GAAGTTATCAGTCGACATGAATTTCGAAAGTCATCTGATTGTTTGCATTA
GTTTGCTTCTTCAATTACGGATGGGAGCAACTATGCCTATGGAACGGCCA
CTCCCCCCCTCTGTGTATGCACAGGCTAGGCATTGGAACGTGCTTGAAAC
AGTCGTAAATAATATGCGGATCACTAAAAGGCCGTGGATAGTTACAAAAA
CTAAACCGTGCGGTGAGGTGATTAGGGAAACCTACATGTTGAGCCCCAAC
GAAGAGGAACTCATAAGGAGAACGGAAGTCATGCTCTTGCAAGCTCAAGG
AAAATTGGAATGTTTACTTAGCCAGTTTCAACCGACATTACGACTTGGCA
GTGTCTACAATAATCCCTTTCTAAACCCGGTCGGTTTTGGTTTTCCTGAC
TATAACGTCTTCCAAAATTTTCCGTTTATCCCGGAATTTAAGCCGCAACG
TATTCCTCCCGAAGAAGATCGCAGTAATGAAAATAATCCTCGCCGAGAAG
ATCCGCGGGTAAATGAGCAGGATGCGTGGAATTTACGCCCTCAAGACGTC
CCCAAAGAAAATGAACACATTCCCAATAGTGAATCGGATAGTGATAGATG
GCTGCCAAATCCAACATCCACACACCGGCCTATCGTAACTTTGCCTACCC
TGGCACCCCCAAACTTGAAGGATACGGAGCCCATATGGGTTCCAGTCCCA
GAACCAACATCAACCGAGCG

BO13901.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31769-PA 936 CG31769-RA 1..704 17..720 3520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31769-RA 1086 CG31769-RA 55..758 17..720 3520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14109925..14110575 720..70 3255 100 Minus
2L 23513712 2L 14110632..14110685 70..17 270 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:44:42 has no hits.

BO13901.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:51 Download gff for BO13901.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31769-PA 1..704 17..720 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:22 Download gff for BO13901.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31769-PA 1..704 17..720 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:18:12 Download gff for BO13901.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 49..758 9..720 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:55:52 Download gff for BO13901.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 49..758 9..720 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:55:52 Download gff for BO13901.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14109925..14110574 71..720 100 <- Minus
2L 14110632..14110691 9..70 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:18:12 Download gff for BO13901.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14109925..14110574 71..720 100 <- Minus
arm_2L 14110632..14110691 9..70 93   Minus

BO13901.pep Sequence

Translation from 16 to 967

> BO13901.pep
MNFESHLIVCISLLLQLRMGATMPMERPLPPSVYAQARHWNVLETVVNNM
RITKRPWIVTKTKPCGEVIRETYMLSPNEEELIRRTEVMLLQAQGKLECL
LSQFQPTLRLGSVYNNPFLNPVGFGFPDYNVFQNFPFIPEFKPQRIPPEE
DRSNENNPRREDPRVNEQDAWNLRPQDVPKENEHIPNSESDSDRWLPNPT
STHRPIVTLPTLAPPNLKDTEPIWVPVPEPTSTERSSVPLPTLAPKGDGT
DSTIDDFLAKVDLTVADIKEEDGQVVTTIVDKQGRVLSASFALSNENEQG
GAANYQSRTGKASFLDH

BO13901.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31769-PA 311 CG31769-PA 1..311 1..311 1652 100 Plus
CG15293-PC 333 CG15293-PC 1..318 1..295 226 26.2 Plus
CG15293-PA 333 CG15293-PA 1..318 1..295 226 26.2 Plus