Clone BO13907 Report

Search the DGRC for BO13907

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:139
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG32687-RA
Protein status:BO13907.pep: Imported from assembly
Sequenced Size:1165

Clone Sequence Records

BO13907.5prime Sequence

777 bp (672 high quality bases) assembled on 2006-05-08

> BO13907.5prime
GAAGTTATCAGTCGACATGGAGGTGTACACGTCGGACAGTTCGGACACGG
ATTCGCGGGAGCAGAAGACACTGGACTTTGGCCGTATGAGCCTGGACCTG
GTCACGCTGGAGGATCACCTGGCCTCGCCGCAGAAGGCTCTGCTCAAGTC
CAGTGGCGACATCGAGACCATGCTGCTCAATCACAATCGATTGGTCGGCT
TGCCCCGTCTACTGCTGCAGTTCGGCAATCTGAAGATTCTGGATCTCAGC
TCGAATGCAATCACCACGCTGCCGGATGCCGTCTGCCAACTGCCGCTGGT
CACCCTGATAGCCAAGAATAACCTGCTGACCAATGCCTCGCTGCCCAAAT
CGCTGCTCACCAAAATGGCCAATGGCAATGGCAACGGCAATGCCACCGGT
GGCACCAACTCCACGCTCAAGGAGCTCAATCTGAGTGGCAATCAATTAAC
CCACTTTCCGGAACAGGTCACCGAGCTGCGCCACCTCAAGTACCTCTATC
TGGGCGGTAACAAGATCTCCAGCGTCTCGAAGGATATCTGGAAGATGCAA
AGTCTGCATGTGCTGTCCCTCGGCGGCAATCTAATCAGCGAAGTTCCCGA
GGCGGTGGGTTCCCTTAATCAGCTGCAGGCTCTCGTCCTGTGCGACAATC
TGATCGAGATTCTGCCGACCAGCATCGCCCGACTGAAGAACCTCAAGTCG
CTGCTGCTGCACAAGAACCGTCTGCGTCCTCTTCCCAAGGACATCGTGGC
ACTGAAGAATCTGACTGAGCTGAGCCT

BO13907.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG32687-PA 1134 CG32687-RA 1..761 17..777 3780 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG32687-RB 2803 CG32687-RB 837..1598 16..777 3795 99.9 Plus
CG32687-RA 2352 CG32687-RA 386..1147 16..777 3795 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10485711..10486247 552..16 2685 100 Minus
X 23542271 X 10483342..10483560 769..551 1080 99.5 Minus
Blast to na_te.dros performed on 2015-02-11 11:44:27 has no hits.

BO13907.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:57 Download gff for BO13907.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32687-PA 1..761 17..777 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:30 Download gff for BO13907.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32687-PA 1..761 17..777 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:18:10 Download gff for BO13907.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32687-RA 376..1147 1..777 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:55:03 Download gff for BO13907.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32687-RA 376..1147 1..777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:55:03 Download gff for BO13907.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10483337..10483558 553..774 98 <- Minus
X 10485711..10486257 1..552 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:18:10 Download gff for BO13907.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10377370..10377591 553..774 98 <- Minus
arm_X 10379744..10380290 1..552 99   Minus

BO13907.complete Sequence

1165 bp assembled on 2008-08-14

GenBank Submission: FJ638722

> BO13907.complete
GAAGTTATCAGTCGACATGGAGGTGTACACGTCGGACAGTTCGGACACGG
ATTCGCGGGAGCAGAAGACACTGGACTTTGGCCGTATGAGCCTGGACCTG
GTCACGCTGGAGGATCACCTGGCCTCGCCGCAGAAGGCTCTGCTCAAGTC
CAGTGGCGACATCGAGACCATGCTGCTCAATCACAATCGATTGGTCGGCT
TGCCCCGTCTACTGCTGCAGTTCGGCAATCTGAAGATTCTGGATCTCAGC
TCGAATGCAATCACCACGCTGCCGGATGCCGTCTGCCAACTGCCGCTGGT
CACCCTGATAGCCAAGAATAACCTGCTGACCAATGCCTCGCTGCCCAAAT
CGCTGCTCACCAAAATGGCCAATGGCAATGGCAACGGCAATGCCACCGGT
GGCACCAACTCCACGCTCAAGGAGCTCAATCTGAGTGGCAATCAATTAAC
CCACTTTCCGGAACAGGTCACCGAGCTGCGCCACCTCAAGTACCTCTATC
TGGGCGGTAACAAGATCTCCAGCGTCTCGAAGGATATCTGGAAGATGCAA
AGTCTGCATGTGCTGTCCCTCGGCGGCAATCTAATCAGCGAAGTTCCCGA
GGCGGTGGGTTCCCTTAATCAGCTGCAGGCTCTCGTCCTGTGCGACAATC
TGATCGAGATTCTGCCGACCAGCATCGCCCGACTGAAGAACCTCAAGTCG
CTGCTGCTGCACAAGAACCGTCTGCGTCATCTTCCCAAGGACATCGTGGC
ACTGAAGAATCTGACTGAGCTGAGCCTACGTGACAATCCGCTGGTGGTGC
GCTTCGTGCAGGACATGGCGCTGAAGCCACCCACCCTCCTCGAGCTGGCT
GGTCGCATGGTGAAGGCCAGTGGCCAGAGACCCGGACCCTATGACATCCC
CAGGACACTGGCCGAGTATTTGAACAGCGCCAATTGCTGCGTGAATCCCA
ACTGCAAGGGCGTCTTCTTCGACAACCGGGTGGAGCACATCAAGTTCGTG
GACTTTTGCGGAAAGTACCGTGTACCATTGCTGCAGTACCTCTGCTCCTC
CAAGTGCATCGAGCCAGAGCAGCCGGCGGCGCGTGGATCATCCGTTCCGG
CGGCGAGCGCCAGCAGCGGATTCATGATGCGCAAGGTGCTGCTGGGCGCA
AGCTTTCTAGACCAT

BO13907.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG32687-RB 1134 CG32687-PB 1..1131 17..1147 5655 100 Plus
CG32687-RA 1134 CG32687-PA 1..1131 17..1147 5655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG32687-RB 2803 CG32687-RB 837..1968 16..1147 5660 100 Plus
CG32687-RA 2352 CG32687-RA 386..1517 16..1147 5660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10485711..10486247 552..16 2685 100 Minus
X 23542271 X 10482863..10483242 1147..768 1900 100 Minus
X 23542271 X 10483342..10483560 769..551 1095 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:15:26 has no hits.

BO13907.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:33 Download gff for BO13907.complete
Subject Subject Range Query Range Percent Splice Strand
CG32687-RA 371..1516 1..1153 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:37 Download gff for BO13907.complete
Subject Subject Range Query Range Percent Splice Strand
CG32687-RA 387..1517 17..1149 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:44 Download gff for BO13907.complete
Subject Subject Range Query Range Percent Splice Strand
CG32687-RA 382..1512 17..1149 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:09 Download gff for BO13907.complete
Subject Subject Range Query Range Percent Splice Strand
CG32687-RA 387..1517 17..1149 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:09 Download gff for BO13907.complete
Subject Subject Range Query Range Percent Splice Strand
X 10482859..10483240 770..1149 99 <- Minus
X 10483342..10483558 553..769 100 <- Minus
X 10485711..10486246 17..552 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:37 Download gff for BO13907.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10376892..10377273 770..1149 99 <- Minus
arm_X 10377375..10377591 553..769 100 <- Minus
arm_X 10379744..10380279 17..552 100   Minus

BO13907.pep Sequence

Translation from 16 to 1165

> BO13907.pep
MEVYTSDSSDTDSREQKTLDFGRMSLDLVTLEDHLASPQKALLKSSGDIE
TMLLNHNRLVGLPRLLLQFGNLKILDLSSNAITTLPDAVCQLPLVTLIAK
NNLLTNASLPKSLLTKMANGNGNGNATGGTNSTLKELNLSGNQLTHFPEQ
VTELRHLKYLYLGGNKISSVSKDIWKMQSLHVLSLGGNLISEVPEAVGSL
NQLQALVLCDNLIEILPTSIARLKNLKSLLLHKNRLRHLPKDIVALKNLT
ELSLRDNPLVVRFVQDMALKPPTLLELAGRMVKASGQRPGPYDIPRTLAE
YLNSANCCVNPNCKGVFFDNRVEHIKFVDFCGKYRVPLLQYLCSSKCIEP
EQPAARGSSVPAASASSGFMMRKVLLGASFLDH

BO13907.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG32687-PB 377 CG32687-PB 1..377 1..377 1918 100 Plus
CG32687-PA 377 CG32687-PA 1..377 1..377 1918 100 Plus
Lap1-PB 849 CG10255-PB 93..306 54..260 244 30.6 Plus
Lap1-PA 849 CG10255-PA 93..306 54..260 244 30.6 Plus
Sur-8-PF 641 CG5407-PF 386..599 42..269 242 30.3 Plus
Lap1-PB 849 CG10255-PB 225..400 48..239 206 30.6 Plus
Lap1-PA 849 CG10255-PA 225..400 48..239 206 30.6 Plus
Lap1-PB 849 CG10255-PB 156..401 48..260 192 26.4 Plus
Lap1-PA 849 CG10255-PA 156..401 48..260 192 26.4 Plus
Lap1-PB 849 CG10255-PB 65..188 134..257 190 37.1 Plus
Lap1-PA 849 CG10255-PA 65..188 134..257 190 37.1 Plus
Lap1-PB 849 CG10255-PB 19..144 134..259 183 37.3 Plus
Lap1-PA 849 CG10255-PA 19..144 134..259 183 37.3 Plus
Lap1-PB 849 CG10255-PB 41..168 133..260 175 36.7 Plus
Lap1-PA 849 CG10255-PA 41..168 133..260 175 36.7 Plus
Lap1-PB 849 CG10255-PB 42..213 49..259 159 25.6 Plus
Lap1-PA 849 CG10255-PA 42..213 49..259 159 25.6 Plus