Clone Sequence Records
BO13907.5prime Sequence
777 bp (672 high quality bases) assembled on 2006-05-08
> BO13907.5prime
GAAGTTATCAGTCGACATGGAGGTGTACACGTCGGACAGTTCGGACACGG
ATTCGCGGGAGCAGAAGACACTGGACTTTGGCCGTATGAGCCTGGACCTG
GTCACGCTGGAGGATCACCTGGCCTCGCCGCAGAAGGCTCTGCTCAAGTC
CAGTGGCGACATCGAGACCATGCTGCTCAATCACAATCGATTGGTCGGCT
TGCCCCGTCTACTGCTGCAGTTCGGCAATCTGAAGATTCTGGATCTCAGC
TCGAATGCAATCACCACGCTGCCGGATGCCGTCTGCCAACTGCCGCTGGT
CACCCTGATAGCCAAGAATAACCTGCTGACCAATGCCTCGCTGCCCAAAT
CGCTGCTCACCAAAATGGCCAATGGCAATGGCAACGGCAATGCCACCGGT
GGCACCAACTCCACGCTCAAGGAGCTCAATCTGAGTGGCAATCAATTAAC
CCACTTTCCGGAACAGGTCACCGAGCTGCGCCACCTCAAGTACCTCTATC
TGGGCGGTAACAAGATCTCCAGCGTCTCGAAGGATATCTGGAAGATGCAA
AGTCTGCATGTGCTGTCCCTCGGCGGCAATCTAATCAGCGAAGTTCCCGA
GGCGGTGGGTTCCCTTAATCAGCTGCAGGCTCTCGTCCTGTGCGACAATC
TGATCGAGATTCTGCCGACCAGCATCGCCCGACTGAAGAACCTCAAGTCG
CTGCTGCTGCACAAGAACCGTCTGCGTCCTCTTCCCAAGGACATCGTGGC
ACTGAAGAATCTGACTGAGCTGAGCCT
BO13907.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32687-PA | 1134 | CG32687-RA | 1..761 | 17..777 | 3780 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32687-RB | 2803 | CG32687-RB | 837..1598 | 16..777 | 3795 | 99.9 | Plus |
CG32687-RA | 2352 | CG32687-RA | 386..1147 | 16..777 | 3795 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10485711..10486247 | 552..16 | 2685 | 100 | Minus |
X | 23542271 | X | 10483342..10483560 | 769..551 | 1080 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:44:27 has no hits.
BO13907.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:14:57 Download gff for
BO13907.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32687-PA | 1..761 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:30 Download gff for
BO13907.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32687-PA | 1..761 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:18:10 Download gff for
BO13907.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32687-RA | 376..1147 | 1..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:55:03 Download gff for
BO13907.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32687-RA | 376..1147 | 1..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:55:03 Download gff for
BO13907.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10483337..10483558 | 553..774 | 98 | <- | Minus |
X | 10485711..10486257 | 1..552 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:18:10 Download gff for
BO13907.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10377370..10377591 | 553..774 | 98 | <- | Minus |
arm_X | 10379744..10380290 | 1..552 | 99 | | Minus |
BO13907.complete Sequence
1165 bp assembled on 2008-08-14
GenBank Submission: FJ638722
> BO13907.complete
GAAGTTATCAGTCGACATGGAGGTGTACACGTCGGACAGTTCGGACACGG
ATTCGCGGGAGCAGAAGACACTGGACTTTGGCCGTATGAGCCTGGACCTG
GTCACGCTGGAGGATCACCTGGCCTCGCCGCAGAAGGCTCTGCTCAAGTC
CAGTGGCGACATCGAGACCATGCTGCTCAATCACAATCGATTGGTCGGCT
TGCCCCGTCTACTGCTGCAGTTCGGCAATCTGAAGATTCTGGATCTCAGC
TCGAATGCAATCACCACGCTGCCGGATGCCGTCTGCCAACTGCCGCTGGT
CACCCTGATAGCCAAGAATAACCTGCTGACCAATGCCTCGCTGCCCAAAT
CGCTGCTCACCAAAATGGCCAATGGCAATGGCAACGGCAATGCCACCGGT
GGCACCAACTCCACGCTCAAGGAGCTCAATCTGAGTGGCAATCAATTAAC
CCACTTTCCGGAACAGGTCACCGAGCTGCGCCACCTCAAGTACCTCTATC
TGGGCGGTAACAAGATCTCCAGCGTCTCGAAGGATATCTGGAAGATGCAA
AGTCTGCATGTGCTGTCCCTCGGCGGCAATCTAATCAGCGAAGTTCCCGA
GGCGGTGGGTTCCCTTAATCAGCTGCAGGCTCTCGTCCTGTGCGACAATC
TGATCGAGATTCTGCCGACCAGCATCGCCCGACTGAAGAACCTCAAGTCG
CTGCTGCTGCACAAGAACCGTCTGCGTCATCTTCCCAAGGACATCGTGGC
ACTGAAGAATCTGACTGAGCTGAGCCTACGTGACAATCCGCTGGTGGTGC
GCTTCGTGCAGGACATGGCGCTGAAGCCACCCACCCTCCTCGAGCTGGCT
GGTCGCATGGTGAAGGCCAGTGGCCAGAGACCCGGACCCTATGACATCCC
CAGGACACTGGCCGAGTATTTGAACAGCGCCAATTGCTGCGTGAATCCCA
ACTGCAAGGGCGTCTTCTTCGACAACCGGGTGGAGCACATCAAGTTCGTG
GACTTTTGCGGAAAGTACCGTGTACCATTGCTGCAGTACCTCTGCTCCTC
CAAGTGCATCGAGCCAGAGCAGCCGGCGGCGCGTGGATCATCCGTTCCGG
CGGCGAGCGCCAGCAGCGGATTCATGATGCGCAAGGTGCTGCTGGGCGCA
AGCTTTCTAGACCAT
BO13907.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32687-RB | 1134 | CG32687-PB | 1..1131 | 17..1147 | 5655 | 100 | Plus |
CG32687-RA | 1134 | CG32687-PA | 1..1131 | 17..1147 | 5655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32687-RB | 2803 | CG32687-RB | 837..1968 | 16..1147 | 5660 | 100 | Plus |
CG32687-RA | 2352 | CG32687-RA | 386..1517 | 16..1147 | 5660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10485711..10486247 | 552..16 | 2685 | 100 | Minus |
X | 23542271 | X | 10482863..10483242 | 1147..768 | 1900 | 100 | Minus |
X | 23542271 | X | 10483342..10483560 | 769..551 | 1095 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:15:26 has no hits.
BO13907.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:33 Download gff for
BO13907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32687-RA | 371..1516 | 1..1153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:37 Download gff for
BO13907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32687-RA | 387..1517 | 17..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:44 Download gff for
BO13907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32687-RA | 382..1512 | 17..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:09 Download gff for
BO13907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32687-RA | 387..1517 | 17..1149 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:09 Download gff for
BO13907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10482859..10483240 | 770..1149 | 99 | <- | Minus |
X | 10483342..10483558 | 553..769 | 100 | <- | Minus |
X | 10485711..10486246 | 17..552 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:37 Download gff for
BO13907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10376892..10377273 | 770..1149 | 99 | <- | Minus |
arm_X | 10377375..10377591 | 553..769 | 100 | <- | Minus |
arm_X | 10379744..10380279 | 17..552 | 100 | | Minus |
BO13907.pep Sequence
Translation from 16 to 1165
> BO13907.pep
MEVYTSDSSDTDSREQKTLDFGRMSLDLVTLEDHLASPQKALLKSSGDIE
TMLLNHNRLVGLPRLLLQFGNLKILDLSSNAITTLPDAVCQLPLVTLIAK
NNLLTNASLPKSLLTKMANGNGNGNATGGTNSTLKELNLSGNQLTHFPEQ
VTELRHLKYLYLGGNKISSVSKDIWKMQSLHVLSLGGNLISEVPEAVGSL
NQLQALVLCDNLIEILPTSIARLKNLKSLLLHKNRLRHLPKDIVALKNLT
ELSLRDNPLVVRFVQDMALKPPTLLELAGRMVKASGQRPGPYDIPRTLAE
YLNSANCCVNPNCKGVFFDNRVEHIKFVDFCGKYRVPLLQYLCSSKCIEP
EQPAARGSSVPAASASSGFMMRKVLLGASFLDH
BO13907.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32687-PB | 377 | CG32687-PB | 1..377 | 1..377 | 1918 | 100 | Plus |
CG32687-PA | 377 | CG32687-PA | 1..377 | 1..377 | 1918 | 100 | Plus |
Lap1-PB | 849 | CG10255-PB | 93..306 | 54..260 | 244 | 30.6 | Plus |
Lap1-PA | 849 | CG10255-PA | 93..306 | 54..260 | 244 | 30.6 | Plus |
Sur-8-PF | 641 | CG5407-PF | 386..599 | 42..269 | 242 | 30.3 | Plus |
Lap1-PB | 849 | CG10255-PB | 225..400 | 48..239 | 206 | 30.6 | Plus |
Lap1-PA | 849 | CG10255-PA | 225..400 | 48..239 | 206 | 30.6 | Plus |
Lap1-PB | 849 | CG10255-PB | 156..401 | 48..260 | 192 | 26.4 | Plus |
Lap1-PA | 849 | CG10255-PA | 156..401 | 48..260 | 192 | 26.4 | Plus |
Lap1-PB | 849 | CG10255-PB | 65..188 | 134..257 | 190 | 37.1 | Plus |
Lap1-PA | 849 | CG10255-PA | 65..188 | 134..257 | 190 | 37.1 | Plus |
Lap1-PB | 849 | CG10255-PB | 19..144 | 134..259 | 183 | 37.3 | Plus |
Lap1-PA | 849 | CG10255-PA | 19..144 | 134..259 | 183 | 37.3 | Plus |
Lap1-PB | 849 | CG10255-PB | 41..168 | 133..260 | 175 | 36.7 | Plus |
Lap1-PA | 849 | CG10255-PA | 41..168 | 133..260 | 175 | 36.7 | Plus |
Lap1-PB | 849 | CG10255-PB | 42..213 | 49..259 | 159 | 25.6 | Plus |
Lap1-PA | 849 | CG10255-PA | 42..213 | 49..259 | 159 | 25.6 | Plus |