Clone Sequence Records
BO13916.3prime Sequence
431 bp (430 high quality bases) assembled on 2006-05-08
> BO13916.3prime
ATGGTCTAGAAAGCTTGCTAAACTGGCCATCAGCAGCTGGGAGCCATTGA
GAGCCAAGGATAGTGGCGTGGCCATCGTTGTCGTGGTGGTCGCGTTTCTG
CTAATTGCTCTATTTGGGAGACAGACACTGTCGGAATAGGCCATAACCAG
TCCAGCAATCAGGGTCAGCAGGAAAGTCAGGCCCAGGAGCCCGCAGCTGA
GGCGCCGTACGGCCTGCCACCAGGGATCCAGAGCGAAGGGCAGGAGCTCC
TCGAGCGTCAGTCCGTAGGAATAGTCAGCAGTTGTGAAAATGGGCTCATA
ATCCTTTGGATCCTTCCCCGTCGCGGGCACGACAATGATGTGCTGCTGCT
GCCGCTGCTGCCGCTGCTGATGTCCTTGTTGCGTTGCCAGAAGCGCTGTC
TTCTCGTTGCAGGACATGTCGACTGATAACT
BO13916.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5697-PA | 402 | CG5697-RA | 1..399 | 417..19 | 1970 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5697-RD | 939 | CG5697-RD | 177..575 | 417..19 | 1980 | 99.7 | Minus |
CG5697-RC | 888 | CG5697-RC | 126..524 | 417..19 | 1980 | 99.7 | Minus |
CG5697-RB | 921 | CG5697-RB | 159..557 | 417..19 | 1980 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:03:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21016501..21016756 | 274..19 | 1265 | 99.6 | Minus |
3R | 32079331 | 3R | 21016285..21016427 | 417..275 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:03:32 has no hits.
BO13916.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:03 Download gff for
BO13916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-PA | 1..402 | 18..417 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:40 Download gff for
BO13916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-PA | 1..402 | 18..417 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:27:11 Download gff for
BO13916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RB | 159..557 | 19..417 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:42:41 Download gff for
BO13916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RB | 159..557 | 19..417 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:42:41 Download gff for
BO13916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21016285..21016427 | 275..417 | 100 | -> | Minus |
3R | 21016501..21016756 | 19..274 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:27:11 Download gff for
BO13916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16842007..16842149 | 275..417 | 100 | -> | Minus |
arm_3R | 16842223..16842478 | 19..274 | 99 | | Minus |
BO13916.5prime Sequence
431 bp (430 high quality bases) assembled on 2006-05-08
> BO13916.5prime
GAAGTTATCAGTCGACATGTCCTGCAACGAGAAGACAGCGCTTCTGGCAA
CGCAACAAGGACATCAGCAGCGGCAGCAGCGGCAGCAGCAGCACATCATT
GTCGTGCCCGCGACGGGGAAGGATCCAAAGGATTATGAGCCCATTTTCAC
AACTGCTGACTATTCCTACGGACTGACGCTCGAGGAGCTCCTGCCCTTCG
CTCTGGATCCCTGGTGGCAGGCCGTACGGCGCCTCAGCTGCGGGCTCCTG
GGCCTGACTTTCCTGCTGACCCTGATTGCTGGACTGGTTATGGCCTATTC
CGACAGTGTCTGTCTCCCAAATAGAGCAATTAGCAGAAACGCGACCACCA
CGACAACGATGGCCACGCCACTATCCTTGGCTCTCAATGGCTCCCAGCTG
CTGATGGCCAGTTTAGCAAGCTTTCTAGACC
BO13916.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5697-PA | 402 | CG5697-RA | 1..399 | 17..415 | 1970 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:48:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5697-RD | 939 | CG5697-RD | 177..575 | 17..415 | 1980 | 99.7 | Plus |
CG5697-RC | 888 | CG5697-RC | 126..524 | 17..415 | 1980 | 99.7 | Plus |
CG5697-RB | 921 | CG5697-RB | 159..557 | 17..415 | 1980 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21016501..21016756 | 160..415 | 1265 | 99.6 | Plus |
3R | 32079331 | 3R | 21016285..21016427 | 17..159 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:48:27 has no hits.
BO13916.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:04 Download gff for
BO13916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-PA | 1..402 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:41 Download gff for
BO13916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-PA | 1..402 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:48:07 Download gff for
BO13916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RB | 159..557 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:24:38 Download gff for
BO13916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RB | 159..557 | 17..415 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:24:38 Download gff for
BO13916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21016285..21016427 | 17..159 | 100 | -> | Plus |
3R | 21016501..21016756 | 160..415 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:48:07 Download gff for
BO13916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16842007..16842149 | 17..159 | 100 | -> | Plus |
arm_3R | 16842223..16842478 | 160..415 | 99 | | Plus |
BO13916.complete Sequence
433 bp assembled on 2006-10-11
GenBank Submission: FJ632974
> BO13916.complete
GAAGTTATCAGTCGACATGTCCTGCAACGAGAAGACAGCGCTTCTGGCAA
CGCAACAAGGACATCAGCAGCGGCAGCAGCGGCAGCAGCAGCACATCATT
GTCGTGCCCGCGACGGGGAAGGATCCAAAGGATTATGAGCCCATTTTCAC
AACTGCTGACTATTCCTACGGACTGACGCTCGAGGAGCTCCTGCCCTTCG
CTCTGGATCCCTGGTGGCAGGCCGTACGGCGCCTCAGCTGCGGGCTCCTG
GGCCTGACTTTCCTGCTGACCCTGATTGCTGGACTGGTTATGGCCTATTC
CGACAGTGTCTGTCTCCCAAATAGAGCAATTAGCAGAAACGCGACCACCA
CGACAACGATGGCCACGCCACTATCCTTGGCTCTCAATGGCTCCCAGCTG
CTGATGGCCAGTTTAGCAAGCTTTCTAGACCAT
BO13916.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5697-RD | 402 | CG5697-PD | 1..399 | 17..415 | 1980 | 99.7 | Plus |
CG5697-RC | 402 | CG5697-PC | 1..399 | 17..415 | 1980 | 99.7 | Plus |
CG5697-RB | 402 | CG5697-PB | 1..399 | 17..415 | 1980 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5697-RD | 939 | CG5697-RD | 177..575 | 17..415 | 1980 | 99.7 | Plus |
CG5697-RC | 888 | CG5697-RC | 126..524 | 17..415 | 1980 | 99.7 | Plus |
CG5697-RB | 921 | CG5697-RB | 159..557 | 17..415 | 1980 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21016501..21016756 | 160..415 | 1265 | 99.6 | Plus |
3R | 32079331 | 3R | 21016285..21016427 | 17..159 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:34:02 has no hits.
BO13916.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:48 Download gff for
BO13916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RA | 1..402 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:53 Download gff for
BO13916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RA | 225..623 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:27 Download gff for
BO13916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RB | 159..557 | 17..417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:49 Download gff for
BO13916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RA | 225..623 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:15 Download gff for
BO13916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RB | 159..557 | 17..417 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:15 Download gff for
BO13916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21016501..21016756 | 160..417 | 98 | | Plus |
3R | 21016285..21016427 | 17..159 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:27 Download gff for
BO13916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16842007..16842149 | 17..159 | 100 | -> | Plus |
arm_3R | 16842223..16842478 | 160..417 | 98 | | Plus |
BO13916.pep Sequence
Translation from 16 to 433
> BO13916.pep
MSCNEKTALLATQQGHQQRQQRQQQHIIVVPATGKDPKDYEPIFTTADYS
YGLTLEELLPFALDPWWQAVRRLSCGLLGLTFLLTLIAGLVMAYSDSVCL
PNRAISRNATTTTTMATPLSLALNGSQLLMASLASFLDH
BO13916.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5697-PD | 133 | CG5697-PD | 1..133 | 1..133 | 682 | 100 | Plus |
CG5697-PC | 133 | CG5697-PC | 1..133 | 1..133 | 682 | 100 | Plus |
CG5697-PB | 133 | CG5697-PB | 1..133 | 1..133 | 682 | 100 | Plus |
CG5697-PA | 133 | CG5697-PA | 1..133 | 1..133 | 682 | 100 | Plus |