Clone BO13916 Report

Search the DGRC for BO13916

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:139
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG5697-RA
Protein status:BO13916.pep: validated full length
Sequenced Size:433

Clone Sequence Records

BO13916.3prime Sequence

431 bp (430 high quality bases) assembled on 2006-05-08

> BO13916.3prime
ATGGTCTAGAAAGCTTGCTAAACTGGCCATCAGCAGCTGGGAGCCATTGA
GAGCCAAGGATAGTGGCGTGGCCATCGTTGTCGTGGTGGTCGCGTTTCTG
CTAATTGCTCTATTTGGGAGACAGACACTGTCGGAATAGGCCATAACCAG
TCCAGCAATCAGGGTCAGCAGGAAAGTCAGGCCCAGGAGCCCGCAGCTGA
GGCGCCGTACGGCCTGCCACCAGGGATCCAGAGCGAAGGGCAGGAGCTCC
TCGAGCGTCAGTCCGTAGGAATAGTCAGCAGTTGTGAAAATGGGCTCATA
ATCCTTTGGATCCTTCCCCGTCGCGGGCACGACAATGATGTGCTGCTGCT
GCCGCTGCTGCCGCTGCTGATGTCCTTGTTGCGTTGCCAGAAGCGCTGTC
TTCTCGTTGCAGGACATGTCGACTGATAACT

BO13916.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5697-PA 402 CG5697-RA 1..399 417..19 1970 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5697-RD 939 CG5697-RD 177..575 417..19 1980 99.7 Minus
CG5697-RC 888 CG5697-RC 126..524 417..19 1980 99.7 Minus
CG5697-RB 921 CG5697-RB 159..557 417..19 1980 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21016501..21016756 274..19 1265 99.6 Minus
3R 32079331 3R 21016285..21016427 417..275 715 100 Minus
Blast to na_te.dros performed on 2015-02-03 07:03:32 has no hits.

BO13916.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:03 Download gff for BO13916.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5697-PA 1..402 18..417 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:40 Download gff for BO13916.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5697-PA 1..402 18..417 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:27:11 Download gff for BO13916.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5697-RB 159..557 19..417 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:42:41 Download gff for BO13916.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5697-RB 159..557 19..417 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:42:41 Download gff for BO13916.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21016285..21016427 275..417 100 -> Minus
3R 21016501..21016756 19..274 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:27:11 Download gff for BO13916.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16842007..16842149 275..417 100 -> Minus
arm_3R 16842223..16842478 19..274 99   Minus

BO13916.5prime Sequence

431 bp (430 high quality bases) assembled on 2006-05-08

> BO13916.5prime
GAAGTTATCAGTCGACATGTCCTGCAACGAGAAGACAGCGCTTCTGGCAA
CGCAACAAGGACATCAGCAGCGGCAGCAGCGGCAGCAGCAGCACATCATT
GTCGTGCCCGCGACGGGGAAGGATCCAAAGGATTATGAGCCCATTTTCAC
AACTGCTGACTATTCCTACGGACTGACGCTCGAGGAGCTCCTGCCCTTCG
CTCTGGATCCCTGGTGGCAGGCCGTACGGCGCCTCAGCTGCGGGCTCCTG
GGCCTGACTTTCCTGCTGACCCTGATTGCTGGACTGGTTATGGCCTATTC
CGACAGTGTCTGTCTCCCAAATAGAGCAATTAGCAGAAACGCGACCACCA
CGACAACGATGGCCACGCCACTATCCTTGGCTCTCAATGGCTCCCAGCTG
CTGATGGCCAGTTTAGCAAGCTTTCTAGACC

BO13916.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5697-PA 402 CG5697-RA 1..399 17..415 1970 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5697-RD 939 CG5697-RD 177..575 17..415 1980 99.7 Plus
CG5697-RC 888 CG5697-RC 126..524 17..415 1980 99.7 Plus
CG5697-RB 921 CG5697-RB 159..557 17..415 1980 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21016501..21016756 160..415 1265 99.6 Plus
3R 32079331 3R 21016285..21016427 17..159 715 100 Plus
Blast to na_te.dros performed on 2015-02-04 02:48:27 has no hits.

BO13916.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:04 Download gff for BO13916.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5697-PA 1..402 17..416 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:41 Download gff for BO13916.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5697-PA 1..402 17..416 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:48:07 Download gff for BO13916.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5697-RB 159..557 17..415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:24:38 Download gff for BO13916.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5697-RB 159..557 17..415 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:24:38 Download gff for BO13916.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21016285..21016427 17..159 100 -> Plus
3R 21016501..21016756 160..415 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:48:07 Download gff for BO13916.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16842007..16842149 17..159 100 -> Plus
arm_3R 16842223..16842478 160..415 99   Plus

BO13916.complete Sequence

433 bp assembled on 2006-10-11

GenBank Submission: FJ632974

> BO13916.complete
GAAGTTATCAGTCGACATGTCCTGCAACGAGAAGACAGCGCTTCTGGCAA
CGCAACAAGGACATCAGCAGCGGCAGCAGCGGCAGCAGCAGCACATCATT
GTCGTGCCCGCGACGGGGAAGGATCCAAAGGATTATGAGCCCATTTTCAC
AACTGCTGACTATTCCTACGGACTGACGCTCGAGGAGCTCCTGCCCTTCG
CTCTGGATCCCTGGTGGCAGGCCGTACGGCGCCTCAGCTGCGGGCTCCTG
GGCCTGACTTTCCTGCTGACCCTGATTGCTGGACTGGTTATGGCCTATTC
CGACAGTGTCTGTCTCCCAAATAGAGCAATTAGCAGAAACGCGACCACCA
CGACAACGATGGCCACGCCACTATCCTTGGCTCTCAATGGCTCCCAGCTG
CTGATGGCCAGTTTAGCAAGCTTTCTAGACCAT

BO13916.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5697-RD 402 CG5697-PD 1..399 17..415 1980 99.7 Plus
CG5697-RC 402 CG5697-PC 1..399 17..415 1980 99.7 Plus
CG5697-RB 402 CG5697-PB 1..399 17..415 1980 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5697-RD 939 CG5697-RD 177..575 17..415 1980 99.7 Plus
CG5697-RC 888 CG5697-RC 126..524 17..415 1980 99.7 Plus
CG5697-RB 921 CG5697-RB 159..557 17..415 1980 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21016501..21016756 160..415 1265 99.6 Plus
3R 32079331 3R 21016285..21016427 17..159 715 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:34:02 has no hits.

BO13916.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:48 Download gff for BO13916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5697-RA 1..402 17..416 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:53 Download gff for BO13916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5697-RA 225..623 17..415 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:27 Download gff for BO13916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5697-RB 159..557 17..417 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:49 Download gff for BO13916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5697-RA 225..623 17..415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:15 Download gff for BO13916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5697-RB 159..557 17..417 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:15 Download gff for BO13916.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21016501..21016756 160..417 98   Plus
3R 21016285..21016427 17..159 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:27 Download gff for BO13916.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16842007..16842149 17..159 100 -> Plus
arm_3R 16842223..16842478 160..417 98   Plus

BO13916.pep Sequence

Translation from 16 to 433

> BO13916.pep
MSCNEKTALLATQQGHQQRQQRQQQHIIVVPATGKDPKDYEPIFTTADYS
YGLTLEELLPFALDPWWQAVRRLSCGLLGLTFLLTLIAGLVMAYSDSVCL
PNRAISRNATTTTTMATPLSLALNGSQLLMASLASFLDH

BO13916.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5697-PD 133 CG5697-PD 1..133 1..133 682 100 Plus
CG5697-PC 133 CG5697-PC 1..133 1..133 682 100 Plus
CG5697-PB 133 CG5697-PB 1..133 1..133 682 100 Plus
CG5697-PA 133 CG5697-PA 1..133 1..133 682 100 Plus