Clone Sequence Records
BO13918.3prime Sequence
520 bp (519 high quality bases) assembled on 2006-05-08
> BO13918.3prime
ATGGTCTAGAAAGCTTGCGTCGAAGGCAATGGAGAAATCCGTCTTAAAAC
TGCGCCGATCGATGGAGTACATGTTGTCGGCGGTGCATTCGTAGAGTCCA
GCGTCCATCTGTGTGGCAGGGTCAATTTCGATCTTCGACTTGACCTTGTC
GTCGCCGATGCGCCATTCGTGTACGTGCATATAGAGGTGCTGATAGATCT
CCGCTCCGTCCTTGTACCAGGTGATATGGGGTCGGGGATTGCCCTTGGCC
ACGCACAAAAAGGCGATCTTGTGGCCCAGAACGTACTCAAGATCGAAGTG
CGAGGCTTGTAGGATTTTGGCGCCATTATTATTATTGTAGTACTGATCGG
ACTCCGGATCGCGATATTTTCCGGTAATTGGCAATCCGATCTGCACCCTG
GACTTGGTTCGTCCACGTCCACGCCCTCGGCGCGCTTTCGCAAACGGGCG
TGGCCAGCATTAATAGCCCCAAAGCGAGACAGACGATCAGGCACTTAACC
TTGCATGTCGACTGATAACT
BO13918.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14141-PA | 489 | CG14141-RA | 68..486 | 437..19 | 2095 | 100 | Minus |
| CG14141-PA | 489 | CG14141-RA | 5..69 | 501..437 | 325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14141-RA | 755 | CG14141-RA | 112..598 | 507..19 | 2395 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11201696..11202001 | 324..19 | 1530 | 100 | Minus |
| 3L | 28110227 | 3L | 11201467..11201643 | 501..324 | 840 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:22:10 has no hits.
BO13918.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:07 Download gff for
BO13918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-PA | 1..489 | 16..506 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:46 Download gff for
BO13918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-PA | 1..489 | 16..506 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:57:50 Download gff for
BO13918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 107..598 | 19..513 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:41:43 Download gff for
BO13918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 107..598 | 19..513 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:41:43 Download gff for
BO13918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11201457..11201642 | 325..513 | 97 | -> | Minus |
| 3L | 11201696..11202001 | 19..324 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:57:50 Download gff for
BO13918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11194557..11194742 | 325..513 | 97 | -> | Minus |
| arm_3L | 11194796..11195101 | 19..324 | 100 | | Minus |
BO13918.5prime Sequence
518 bp (517 high quality bases) assembled on 2006-05-08
> BO13918.5prime
GAAGTTATCAGTCGACATGCAGGTTAAGTGCCTGATCGTCTGTCTCGCTT
TGGGGCTATTAATGCTGGCCACGCCCGTTTGCGAAGCGCGCCGAGGGCGT
GGACGTGGACGAACCAAGTCCAGGGTGCAGATCGGATTGCCAATTACCGG
AAAATATCGCGATCCGGAGTCCGATCAGTACTACAATAATAATAATGGCG
CCAAAATCCTACAAGCCTCGCACTTCGATCTTGAGTACGTTCTGGGCCAC
AAGATCGCCTTTTTGTGCGTGGCCAAGGGCAATCCCCGACCCCATATCAC
CTGGTACAAGGACGGAGCGGAGATCTATCAGCACCTCTATATGCACGTAC
ACGAATGGCGCATCGGCGACGACAAGGTCAAGTCGAAGATCGAAATTGAC
CCTGCCACACAGATGGACGCTGGACTCTACGAATGCACCGCCGACAACAT
GTACTCCATCGATCGGCGCAGTTTTAAGACGGATTTCTCCATTGCCTTCG
ACGCAAGCTTTCTAGACC
BO13918.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14141-PA | 489 | CG14141-RA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14141-RA | 755 | CG14141-RA | 112..598 | 16..502 | 2435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11201696..11202001 | 197..502 | 1530 | 100 | Plus |
| 3L | 28110227 | 3L | 11201462..11201643 | 16..197 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:24:09 has no hits.
BO13918.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:08 Download gff for
BO13918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-PA | 1..489 | 17..505 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:47 Download gff for
BO13918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-PA | 1..489 | 17..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:57:25 Download gff for
BO13918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 107..598 | 10..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:22 Download gff for
BO13918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 107..598 | 10..502 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:22 Download gff for
BO13918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11201457..11201642 | 10..196 | 98 | -> | Plus |
| 3L | 11201696..11202001 | 197..502 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:57:25 Download gff for
BO13918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11194557..11194742 | 10..196 | 98 | -> | Plus |
| arm_3L | 11194796..11195101 | 197..502 | 100 | | Plus |
BO13918.complete Sequence
520 bp assembled on 2007-03-23
GenBank Submission: FJ632975
> BO13918.complete
GAAGTTATCAGTCGACATGCAGGTTAAGTGCCTGATCGTCTGTCTCGCTT
TGGGGCTATTAATGCTGGCCACGCCCGTTTGCGAAGCGCGCCGAGGGCGT
GGACGTGGACGAACCAAGTCCAGGGTGCAGATCGGATTGCCAATTACCGG
AAAATATCGCGATCCGGAGTCCGATCAGTACTACAATAATAATAATGGCG
CCAAAATCCTACAAGCCTCGCACTTCGATCTTGAGTACGTTCTGGGCCAC
AAGATCGCCTTTTTGTGCGTGGCCAAGGGCAATCCCCGACCCCATATCAC
CTGGTACAAGGACGGAGCGGAGATCTATCAGCACCTCTATATGCACGTAC
ACGAATGGCGCATCGGCGACGACAAGGTCAAGTCGAAGATCGAAATTGAC
CCTGCCACACAGATGGACGCTGGACTCTACGAATGCACCGCCGACAACAT
GTACTCCATCGATCGGCGCAGTTTTAAGACGGATTTCTCCATTGCCTTCG
ACGCAAGCTTTCTAGACCAT
BO13918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14141-RA | 489 | CG14141-PA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14141-RA | 755 | CG14141-RA | 112..598 | 16..502 | 2435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:32:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11201696..11202001 | 197..502 | 1530 | 100 | Plus |
| 3L | 28110227 | 3L | 11201462..11201643 | 16..197 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:32:05 has no hits.
BO13918.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:21 Download gff for
BO13918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 1..489 | 17..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:32 Download gff for
BO13918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 152..643 | 10..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:56:35 Download gff for
BO13918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 113..598 | 17..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:21 Download gff for
BO13918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 152..643 | 10..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:42 Download gff for
BO13918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 113..598 | 17..504 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:42 Download gff for
BO13918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11201463..11201642 | 17..196 | 100 | -> | Plus |
| 3L | 11201696..11202001 | 197..504 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:56:35 Download gff for
BO13918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11194563..11194742 | 17..196 | 100 | -> | Plus |
| arm_3L | 11194796..11195101 | 197..504 | 99 | | Plus |
BO13918.pep Sequence
Translation from 16 to 520
> BO13918.pep
MQVKCLIVCLALGLLMLATPVCEARRGRGRGRTKSRVQIGLPITGKYRDP
ESDQYYNNNNGAKILQASHFDLEYVLGHKIAFLCVAKGNPRPHITWYKDG
AEIYQHLYMHVHEWRIGDDKVKSKIEIDPATQMDAGLYECTADNMYSIDR
RSFKTDFSIAFDASFLDH
BO13918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14141-PA | 162 | CG14141-PA | 1..162 | 1..162 | 873 | 100 | Plus |
| CG7607-PA | 167 | CG7607-PA | 11..162 | 7..157 | 417 | 52 | Plus |
