Clone BO13919 Report

Search the DGRC for BO13919

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:139
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG10646-RA
Protein status:BO13919.pep: Imported from assembly
Sequenced Size:1183

Clone Sequence Records

BO13919.3prime Sequence

712 bp (545 high quality bases) assembled on 2006-05-08

> BO13919.3prime
ATGGTCTAGAAAGCTTGCAAATATAATCTGGTACTTGTACTGCTTGGGCA
CCTTTGAGATTATGACGCGACCATCGTAGCTGAGCGAAGCAAAGATCCAC
GGATCCACATTGCTCCACTCCGCGCAGTAAACGGAGTCCTCGTGCTGATC
GAAGGTCTGCAGCAGACCATCTGGCAAGAGTTTGTGCCTCTCCTCGGCAT
CGGCACCACTGAAGTTGGACTCATCTAGTCCAGCCTGAACCTGCGTCTCC
GAACTAACCGATCCCGCACACGTGAGCAGCACCTTGCAGTCACTGGAGCT
GGAGAGGATCAGTTGGTCGTGGAATGTGTTGAAGCGAACGCACCAGACCC
AATGCGAATGATCGGAGCGCTCGAAAACGGGAGCCTTGGGCATGCGACAG
TCCCAGATCCTCAAGTAGCCATCGTCACCGCCGGTGACCAAATGGCACTG
CTTTGTTGGGATTGCAGTCCAGGTCACGGACCATTTGACCATGCGCATCG
TTGATGCTCCAGGCACAATGCTGTGTATCCCGCACATCGTAGGCACTTAG
ATTGCCATCCTGGAGGGTGAGAAACTGGGTGGCCCTGATGATGATGCGAC
CACTTTGCCGCTGGGGAAATGCTGTGTGTGCTTTTGCAGATCCACTGGAT
GAACCACTGGCCGGGACCTCGGCCACCACGCGAGTAGAGGACTCGGGCCG
CTGCATCCCAGC

BO13919.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10646-PA 1152 CG10646-RA 715..1149 453..19 2175 100 Minus
CG10646-PA 1152 CG10646-RA 591..716 578..453 630 100 Minus
CG10646-PA 1152 CG10646-RA 465..539 707..633 325 97.3 Minus
CG10646-PA 1152 CG10646-RA 565..592 605..578 140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10646-RA 1377 CG10646-RA 527..1216 712..19 3310 98.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12502628..12503317 19..712 3210 98.8 Plus
Blast to na_te.dros performed on 2015-02-10 15:33:44 has no hits.

BO13919.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:09 Download gff for BO13919.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10646-PA 460..1152 15..712 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:48 Download gff for BO13919.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10646-PA 460..1152 15..712 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:16:24 Download gff for BO13919.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 527..1227 6..712 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:58 Download gff for BO13919.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 527..1227 6..712 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:58 Download gff for BO13919.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12502617..12503317 6..712 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:16:24 Download gff for BO13919.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12495717..12496417 6..712 98   Plus

BO13919.5prime Sequence

621 bp (575 high quality bases) assembled on 2006-05-08

> BO13919.5prime
GAAGTTATCAGTCGACATGGATGAAAATAGCTTAATCTACGGACTCGAAC
TGCAGGCGCGGGCTTTAACACCTCAGTACGGAGAGAGCAACGATGTGTGC
TTCTTCATAGCCACCAACTCCTTGAAGCCCACCAATCAGGTTCACTTAAT
CCAGTACGAGGAGGAGCAGGGATCCGTGCAATCAAAGGTCTTTGAGCACG
CCCTGGGTGAAGTTTGGAAACTAAATAGTTGTCCGCGTAATCCTCGCCTG
CTGGCCTCCGTCTACAATGTACAAAAGGGAGCACAAGTGCTGACCAAAGC
GGCTCTGTTTACGCTGCCCGAGAATCTCAATCCCGATCCGGAGCAGCTGA
AGTCAGAGTACCTGCCGTGGGAGCAGGTTGAGGTCCTGGATACCGAAGCA
CTGGGCGAACGTGTGAAGACCATCGAATTCCATCCCAACCAGGACACACT
CGCCTGTGTGGTGGACAACAAGGTGGCTGTGATGCAGCGGGCCGAGTCCT
CTACTCGCGTGGTGGCCGAGGTGCCGGCCAGTGGTTCATCCAGTGGATCT
GCAAAGCACACACAGCATTTCACCAGCGGCAAGTGGTCGCATCATCATCA
GGGCCACCAGTTTCTCACCCT

BO13919.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10646-PA 1152 CG10646-RA 1..605 17..621 3025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10646-RA 1377 CG10646-RA 68..672 17..621 3025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12503172..12503607 621..186 2180 100 Minus
3L 28110227 3L 12503655..12503827 189..17 865 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:44:13 has no hits.

BO13919.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:10 Download gff for BO13919.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10646-PA 1..605 17..621 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:49 Download gff for BO13919.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10646-PA 1..605 17..621 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:18:08 Download gff for BO13919.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 58..672 7..621 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:53:49 Download gff for BO13919.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 58..672 7..621 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:53:49 Download gff for BO13919.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12503172..12503605 188..621 100 <- Minus
3L 12503657..12503837 7..187 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:18:08 Download gff for BO13919.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12496272..12496705 188..621 100 <- Minus
arm_3L 12496757..12496937 7..187 97   Minus

BO13919.complete Sequence

1183 bp assembled on 2008-11-10

GenBank Submission: KX798059

> BO13919.complete
GAAGTTATCAGTCGACATGGATGAAAATAGCTTAATCTACGGACTCGAAC
TGCAGGCGCGGGCTTTAACACCTCAGTACGGAGAGAGCAACGATGTGTGC
TTCTTCATAGCCACCAACTCCTTGAAGCCCACCAATCAGGTTCACTTAAT
CCAGTACGAGGAGGAGCAGGGATCCGTGCAATCAAAGGTCTTTGAGCACG
CCCTGGGTGAAGTTTGGAAACTAAATAGTTGTCCGCGTAATCCTCGCCTG
CTGGCCTCCGTCTACAATGTACAAAAGGGAGCACAAGTGCTGACCAAAGC
GGCTCTGTTTACGCTGCCCGAGAATCTCAATCCCGATCCGGAGCAGCTGA
AGTCAGAGTACCTGCCGTGGGAGCAGGTTGAGGTCCTGGATACCGAAGCA
CTGGGCGAACGTGTGAAGACCATCGAATTCCATCCCAACCAGGACACACT
CGCCTGTGTGGTGGACAACAAGGTGGCTGTGATGCAGCGGGCCGAGTCCT
CTACTCGCGTGGTGGCCGAGGTGCCGGCCAGTGGTTCATCCAGTGGATCT
GCAAAGCACACACAGCATTTCACCAGCGGCAAGTGGTCGCATCATCATCA
GGGCCACCAGTTTCTCACCCTCCAGGATGGCAATCTAAGTGCCTACGATG
TGCGGGATACACAGCATTGTGCCTGGAGCATCAACGATGCGCATGGTCAA
ATGGTCCGTGACCTGGACTGCAATCCCAACAAGCAGTGCCATTTGGTCAC
CGGCGGTGACGATGGCTACTTGAGGATCTGGGACTGTCGCATGCCCAAGG
CTCCCGTTTTCGAGCGCTCCGATCATTCGCATTGGGTCTGGTGCGTTCGC
TTCAACACATTCCACGACCAACTGATCCTCTCCAGCTCCAGTGACTGCAA
GGTGCTGCTCACGTGTGCGGGATCGGTTAGTTCGGAGACGCAGGTTCAGG
CTGGACTAGATGAGTCCAACTTCAGTGGTGCCGATGCCGAGGAGAGGCAC
AAACTCTTGCCAGATGGTCTGCTGCAGACCTTCGATCAGCACGAGGACTC
CGTTTACTGCGCGGAGTGGAGCAATGTGGATCCGTGGATCTTTGCTTCGC
TCAGCTACGATGGTCGCGTCATAATCTCAAAGGTGCCCAAGCAGTACAAG
TACCAGATTATATTTGCAAGCTTTCTAGACCAT

BO13919.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10646-RA 1152 CG10646-PA 1..1149 17..1165 5745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10646-RA 1377 CG10646-RA 68..1216 17..1165 5745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12502628..12503607 1165..186 4900 100 Minus
3L 28110227 3L 12503655..12503827 189..17 865 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:24:24 has no hits.

BO13919.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:08 Download gff for BO13919.complete
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 73..1242 7..1178 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:16 Download gff for BO13919.complete
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 68..1216 17..1167 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:38 Download gff for BO13919.complete
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 83..1231 17..1167 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:56 Download gff for BO13919.complete
Subject Subject Range Query Range Percent Splice Strand
CG10646-RA 68..1216 17..1167 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:56 Download gff for BO13919.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12502626..12503605 188..1167 99 <- Minus
3L 12503657..12503827 17..187 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:16 Download gff for BO13919.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12496757..12496927 17..187 100   Minus
arm_3L 12495726..12496705 188..1167 99 <- Minus

BO13919.pep Sequence

Translation from 16 to 1183

> BO13919.pep
MDENSLIYGLELQARALTPQYGESNDVCFFIATNSLKPTNQVHLIQYEEE
QGSVQSKVFEHALGEVWKLNSCPRNPRLLASVYNVQKGAQVLTKAALFTL
PENLNPDPEQLKSEYLPWEQVEVLDTEALGERVKTIEFHPNQDTLACVVD
NKVAVMQRAESSTRVVAEVPASGSSSGSAKHTQHFTSGKWSHHHQGHQFL
TLQDGNLSAYDVRDTQHCAWSINDAHGQMVRDLDCNPNKQCHLVTGGDDG
YLRIWDCRMPKAPVFERSDHSHWVWCVRFNTFHDQLILSSSSDCKVLLTC
AGSVSSETQVQAGLDESNFSGADAEERHKLLPDGLLQTFDQHEDSVYCAE
WSNVDPWIFASLSYDGRVIISKVPKQYKYQIIFASFLDH

BO13919.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10646-PA 383 CG10646-PA 1..383 1..383 2057 100 Plus