Clone Sequence Records
BO13919.3prime Sequence
712 bp (545 high quality bases) assembled on 2006-05-08
> BO13919.3prime
ATGGTCTAGAAAGCTTGCAAATATAATCTGGTACTTGTACTGCTTGGGCA
CCTTTGAGATTATGACGCGACCATCGTAGCTGAGCGAAGCAAAGATCCAC
GGATCCACATTGCTCCACTCCGCGCAGTAAACGGAGTCCTCGTGCTGATC
GAAGGTCTGCAGCAGACCATCTGGCAAGAGTTTGTGCCTCTCCTCGGCAT
CGGCACCACTGAAGTTGGACTCATCTAGTCCAGCCTGAACCTGCGTCTCC
GAACTAACCGATCCCGCACACGTGAGCAGCACCTTGCAGTCACTGGAGCT
GGAGAGGATCAGTTGGTCGTGGAATGTGTTGAAGCGAACGCACCAGACCC
AATGCGAATGATCGGAGCGCTCGAAAACGGGAGCCTTGGGCATGCGACAG
TCCCAGATCCTCAAGTAGCCATCGTCACCGCCGGTGACCAAATGGCACTG
CTTTGTTGGGATTGCAGTCCAGGTCACGGACCATTTGACCATGCGCATCG
TTGATGCTCCAGGCACAATGCTGTGTATCCCGCACATCGTAGGCACTTAG
ATTGCCATCCTGGAGGGTGAGAAACTGGGTGGCCCTGATGATGATGCGAC
CACTTTGCCGCTGGGGAAATGCTGTGTGTGCTTTTGCAGATCCACTGGAT
GAACCACTGGCCGGGACCTCGGCCACCACGCGAGTAGAGGACTCGGGCCG
CTGCATCCCAGC
BO13919.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10646-PA | 1152 | CG10646-RA | 715..1149 | 453..19 | 2175 | 100 | Minus |
CG10646-PA | 1152 | CG10646-RA | 591..716 | 578..453 | 630 | 100 | Minus |
CG10646-PA | 1152 | CG10646-RA | 465..539 | 707..633 | 325 | 97.3 | Minus |
CG10646-PA | 1152 | CG10646-RA | 565..592 | 605..578 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10646-RA | 1377 | CG10646-RA | 527..1216 | 712..19 | 3310 | 98.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12502628..12503317 | 19..712 | 3210 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:33:44 has no hits.
BO13919.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:09 Download gff for
BO13919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10646-PA | 460..1152 | 15..712 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:48 Download gff for
BO13919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10646-PA | 460..1152 | 15..712 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:16:24 Download gff for
BO13919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10646-RA | 527..1227 | 6..712 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:58 Download gff for
BO13919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10646-RA | 527..1227 | 6..712 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:58 Download gff for
BO13919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12502617..12503317 | 6..712 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:16:24 Download gff for
BO13919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12495717..12496417 | 6..712 | 98 | | Plus |
BO13919.5prime Sequence
621 bp (575 high quality bases) assembled on 2006-05-08
> BO13919.5prime
GAAGTTATCAGTCGACATGGATGAAAATAGCTTAATCTACGGACTCGAAC
TGCAGGCGCGGGCTTTAACACCTCAGTACGGAGAGAGCAACGATGTGTGC
TTCTTCATAGCCACCAACTCCTTGAAGCCCACCAATCAGGTTCACTTAAT
CCAGTACGAGGAGGAGCAGGGATCCGTGCAATCAAAGGTCTTTGAGCACG
CCCTGGGTGAAGTTTGGAAACTAAATAGTTGTCCGCGTAATCCTCGCCTG
CTGGCCTCCGTCTACAATGTACAAAAGGGAGCACAAGTGCTGACCAAAGC
GGCTCTGTTTACGCTGCCCGAGAATCTCAATCCCGATCCGGAGCAGCTGA
AGTCAGAGTACCTGCCGTGGGAGCAGGTTGAGGTCCTGGATACCGAAGCA
CTGGGCGAACGTGTGAAGACCATCGAATTCCATCCCAACCAGGACACACT
CGCCTGTGTGGTGGACAACAAGGTGGCTGTGATGCAGCGGGCCGAGTCCT
CTACTCGCGTGGTGGCCGAGGTGCCGGCCAGTGGTTCATCCAGTGGATCT
GCAAAGCACACACAGCATTTCACCAGCGGCAAGTGGTCGCATCATCATCA
GGGCCACCAGTTTCTCACCCT
BO13919.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10646-PA | 1152 | CG10646-RA | 1..605 | 17..621 | 3025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10646-RA | 1377 | CG10646-RA | 68..672 | 17..621 | 3025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12503172..12503607 | 621..186 | 2180 | 100 | Minus |
3L | 28110227 | 3L | 12503655..12503827 | 189..17 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:44:13 has no hits.
BO13919.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:10 Download gff for
BO13919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10646-PA | 1..605 | 17..621 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:49 Download gff for
BO13919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10646-PA | 1..605 | 17..621 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:18:08 Download gff for
BO13919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10646-RA | 58..672 | 7..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:53:49 Download gff for
BO13919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10646-RA | 58..672 | 7..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:53:49 Download gff for
BO13919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12503172..12503605 | 188..621 | 100 | <- | Minus |
3L | 12503657..12503837 | 7..187 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:18:08 Download gff for
BO13919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12496272..12496705 | 188..621 | 100 | <- | Minus |
arm_3L | 12496757..12496937 | 7..187 | 97 | | Minus |
BO13919.complete Sequence
1183 bp assembled on 2008-11-10
GenBank Submission: KX798059
> BO13919.complete
GAAGTTATCAGTCGACATGGATGAAAATAGCTTAATCTACGGACTCGAAC
TGCAGGCGCGGGCTTTAACACCTCAGTACGGAGAGAGCAACGATGTGTGC
TTCTTCATAGCCACCAACTCCTTGAAGCCCACCAATCAGGTTCACTTAAT
CCAGTACGAGGAGGAGCAGGGATCCGTGCAATCAAAGGTCTTTGAGCACG
CCCTGGGTGAAGTTTGGAAACTAAATAGTTGTCCGCGTAATCCTCGCCTG
CTGGCCTCCGTCTACAATGTACAAAAGGGAGCACAAGTGCTGACCAAAGC
GGCTCTGTTTACGCTGCCCGAGAATCTCAATCCCGATCCGGAGCAGCTGA
AGTCAGAGTACCTGCCGTGGGAGCAGGTTGAGGTCCTGGATACCGAAGCA
CTGGGCGAACGTGTGAAGACCATCGAATTCCATCCCAACCAGGACACACT
CGCCTGTGTGGTGGACAACAAGGTGGCTGTGATGCAGCGGGCCGAGTCCT
CTACTCGCGTGGTGGCCGAGGTGCCGGCCAGTGGTTCATCCAGTGGATCT
GCAAAGCACACACAGCATTTCACCAGCGGCAAGTGGTCGCATCATCATCA
GGGCCACCAGTTTCTCACCCTCCAGGATGGCAATCTAAGTGCCTACGATG
TGCGGGATACACAGCATTGTGCCTGGAGCATCAACGATGCGCATGGTCAA
ATGGTCCGTGACCTGGACTGCAATCCCAACAAGCAGTGCCATTTGGTCAC
CGGCGGTGACGATGGCTACTTGAGGATCTGGGACTGTCGCATGCCCAAGG
CTCCCGTTTTCGAGCGCTCCGATCATTCGCATTGGGTCTGGTGCGTTCGC
TTCAACACATTCCACGACCAACTGATCCTCTCCAGCTCCAGTGACTGCAA
GGTGCTGCTCACGTGTGCGGGATCGGTTAGTTCGGAGACGCAGGTTCAGG
CTGGACTAGATGAGTCCAACTTCAGTGGTGCCGATGCCGAGGAGAGGCAC
AAACTCTTGCCAGATGGTCTGCTGCAGACCTTCGATCAGCACGAGGACTC
CGTTTACTGCGCGGAGTGGAGCAATGTGGATCCGTGGATCTTTGCTTCGC
TCAGCTACGATGGTCGCGTCATAATCTCAAAGGTGCCCAAGCAGTACAAG
TACCAGATTATATTTGCAAGCTTTCTAGACCAT
BO13919.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10646-RA | 1152 | CG10646-PA | 1..1149 | 17..1165 | 5745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10646-RA | 1377 | CG10646-RA | 68..1216 | 17..1165 | 5745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12502628..12503607 | 1165..186 | 4900 | 100 | Minus |
3L | 28110227 | 3L | 12503655..12503827 | 189..17 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:24:24 has no hits.
BO13919.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:08 Download gff for
BO13919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10646-RA | 73..1242 | 7..1178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:16 Download gff for
BO13919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10646-RA | 68..1216 | 17..1167 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:38 Download gff for
BO13919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10646-RA | 83..1231 | 17..1167 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:56 Download gff for
BO13919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10646-RA | 68..1216 | 17..1167 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:56 Download gff for
BO13919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12502626..12503605 | 188..1167 | 99 | <- | Minus |
3L | 12503657..12503827 | 17..187 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:16 Download gff for
BO13919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12496757..12496927 | 17..187 | 100 | | Minus |
arm_3L | 12495726..12496705 | 188..1167 | 99 | <- | Minus |
BO13919.pep Sequence
Translation from 16 to 1183
> BO13919.pep
MDENSLIYGLELQARALTPQYGESNDVCFFIATNSLKPTNQVHLIQYEEE
QGSVQSKVFEHALGEVWKLNSCPRNPRLLASVYNVQKGAQVLTKAALFTL
PENLNPDPEQLKSEYLPWEQVEVLDTEALGERVKTIEFHPNQDTLACVVD
NKVAVMQRAESSTRVVAEVPASGSSSGSAKHTQHFTSGKWSHHHQGHQFL
TLQDGNLSAYDVRDTQHCAWSINDAHGQMVRDLDCNPNKQCHLVTGGDDG
YLRIWDCRMPKAPVFERSDHSHWVWCVRFNTFHDQLILSSSSDCKVLLTC
AGSVSSETQVQAGLDESNFSGADAEERHKLLPDGLLQTFDQHEDSVYCAE
WSNVDPWIFASLSYDGRVIISKVPKQYKYQIIFASFLDH
BO13919.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10646-PA | 383 | CG10646-PA | 1..383 | 1..383 | 2057 | 100 | Plus |