Clone Sequence Records
BO13925.3prime Sequence
398 bp (397 high quality bases) assembled on 2006-05-08
> BO13925.3prime
ATGGTCTAGAAAGCTTGCCTTCCTAAAGCAGGAGATGGGATTAAAGTAGC
ACTGCCGGTATCTAACTTGACGTTTGCTCTCGGGCAGCCGATAAAGTTCA
TTCACATTGCCGTAGGTGGGACTCCTCAAATAGGCGCTGTAACTGGTGGG
TCTGTATTGGGCAAAGAGCATCTGCAGCCGATCCATTGGAATATTGGGAT
AGATTGCCTGGGCTGGCATATCGTAGCCACCTCCATAGGCGCCTCGCACG
TCCTCCGCGTCCTGGCCATCAAGTCCATCGGAGTCCGGTCCTGTTTCGGC
ACCCGAAGGTCGGGCCTCGCTGAGGGCAAAGAACAGGGTGAGGAGTAGGC
CGTAGCACAATAATATCTGCACGAATTTCATCATGTCGACTGATAACT
BO13925.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14919-PA | 369 | Ast-C-RA | 1..366 | 384..19 | 1830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstC-RA | 1202 | CG14919-RA | 264..629 | 384..19 | 1830 | 100 | Minus |
AstC-RB | 1199 | CG14919-RB | 264..626 | 384..19 | 1775 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:04:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11076927..11077067 | 146..286 | 705 | 100 | Plus |
2L | 23513712 | 2L | 11076738..11076864 | 19..145 | 635 | 100 | Plus |
2L | 23513712 | 2L | 11077122..11077221 | 285..384 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:04:30 has no hits.
BO13925.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:21 Download gff for
BO13925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ast-C-PA | 1..369 | 15..384 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:05 Download gff for
BO13925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14919-PA | 1..369 | 15..384 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:27:21 Download gff for
BO13925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ast-C-RA | 264..635 | 11..384 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:42:49 Download gff for
BO13925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AstC-RA | 264..635 | 11..384 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:42:49 Download gff for
BO13925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11076732..11076864 | 11..145 | 97 | <- | Plus |
2L | 11076927..11077066 | 146..285 | 100 | <- | Plus |
2L | 11077123..11077221 | 286..384 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:27:21 Download gff for
BO13925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11076732..11076864 | 11..145 | 97 | <- | Plus |
arm_2L | 11076927..11077066 | 146..285 | 100 | <- | Plus |
arm_2L | 11077123..11077221 | 286..384 | 100 | | Plus |
BO13925.5prime Sequence
398 bp (397 high quality bases) assembled on 2006-05-08
> BO13925.5prime
GAAGTTATCAGTCGACATGATGAAATTCGTGCAGATATTATTGTGCTACG
GCCTACTCCTCACCCTGTTCTTTGCCCTCAGCGAGGCCCGACCTTCGGGT
GCCGAAACAGGACCGGACTCCGATGGACTTGATGGCCAGGACGCGGAGGA
CGTGCGAGGCGCCTATGGAGGTGGCTACGATATGCCAGCCCAGGCAATCT
ATCCCAATATTCCAATGGATCGGCTGCAGATGCTCTTTGCCCAATACAGA
CCCACCAGTTACAGCGCCTATTTGAGGAGTCCCACCTACGGCAATGTGAA
TGAACTTTATCGGCTGCCCGAGAGCAAACGTCAAGTTAGATACCGGCAGT
GCTACTTTAATCCCATCTCCTGCTTTAGGAAGGCAAGCTTTCTAGACC
BO13925.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14919-PA | 369 | Ast-C-RA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstC-RA | 1202 | CG14919-RA | 264..629 | 17..382 | 1830 | 100 | Plus |
AstC-RB | 1199 | CG14919-RB | 264..626 | 17..382 | 1775 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11076927..11077067 | 255..115 | 705 | 100 | Minus |
2L | 23513712 | 2L | 11076738..11076864 | 382..256 | 635 | 100 | Minus |
2L | 23513712 | 2L | 11077122..11077221 | 116..17 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:07:53 has no hits.
BO13925.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:22 Download gff for
BO13925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ast-C-PA | 1..369 | 17..386 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:07 Download gff for
BO13925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14919-PA | 1..369 | 17..386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:15:12 Download gff for
BO13925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ast-C-RA | 264..635 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:41:08 Download gff for
BO13925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AstC-RA | 264..635 | 17..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:41:08 Download gff for
BO13925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11076927..11077066 | 116..255 | 100 | <- | Minus |
2L | 11077123..11077221 | 17..115 | 100 | | Minus |
2L | 11076732..11076864 | 256..390 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:15:12 Download gff for
BO13925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11076732..11076864 | 256..390 | 97 | <- | Minus |
arm_2L | 11076927..11077066 | 116..255 | 100 | <- | Minus |
arm_2L | 11077123..11077221 | 17..115 | 100 | | Minus |
BO13925.complete Sequence
400 bp assembled on 2006-10-11
GenBank Submission: FJ632976
> BO13925.complete
GAAGTTATCAGTCGACATGATGAAATTCGTGCAGATATTATTGTGCTACG
GCCTACTCCTCACCCTGTTCTTTGCCCTCAGCGAGGCCCGACCTTCGGGT
GCCGAAACAGGACCGGACTCCGATGGACTTGATGGCCAGGACGCGGAGGA
CGTGCGAGGCGCCTATGGAGGTGGCTACGATATGCCAGCCCAGGCAATCT
ATCCCAATATTCCAATGGATCGGCTGCAGATGCTCTTTGCCCAATACAGA
CCCACCAGTTACAGCGCCTATTTGAGGAGTCCCACCTACGGCAATGTGAA
TGAACTTTATCGGCTGCCCGAGAGCAAACGTCAAGTTAGATACCGGCAGT
GCTACTTTAATCCCATCTCCTGCTTTAGGAAGGCAAGCTTTCTAGACCAT
BO13925.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstC-RA | 369 | CG14919-PA | 1..366 | 17..382 | 1830 | 100 | Plus |
AstC-RB | 366 | CG14919-PB | 1..363 | 17..382 | 1750 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstC-RA | 1202 | CG14919-RA | 264..629 | 17..382 | 1830 | 100 | Plus |
AstC-RB | 1199 | CG14919-RB | 264..626 | 17..382 | 1750 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11076927..11077067 | 255..115 | 705 | 100 | Minus |
2L | 23513712 | 2L | 11076738..11076864 | 382..256 | 635 | 100 | Minus |
2L | 23513712 | 2L | 11077122..11077221 | 116..17 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:41:50 has no hits.
BO13925.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:20 Download gff for
BO13925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ast-C-RA | 1..369 | 17..386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:02 Download gff for
BO13925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ast-C-RA | 262..633 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:40 Download gff for
BO13925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ast-C-RA | 264..629 | 17..384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:20 Download gff for
BO13925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ast-C-RA | 262..633 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:56 Download gff for
BO13925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AstC-RA | 264..629 | 17..384 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:56 Download gff for
BO13925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11076736..11076864 | 256..384 | 98 | <- | Minus |
2L | 11076927..11077066 | 116..255 | 100 | <- | Minus |
2L | 11077123..11077221 | 17..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:40 Download gff for
BO13925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11076736..11076864 | 256..384 | 98 | <- | Minus |
arm_2L | 11076927..11077066 | 116..255 | 100 | <- | Minus |
arm_2L | 11077123..11077221 | 17..115 | 100 | | Minus |
BO13925.pep Sequence
Translation from 16 to 400
> BO13925.pep
MMKFVQILLCYGLLLTLFFALSEARPSGAETGPDSDGLDGQDAEDVRGAY
GGGYDMPAQAIYPNIPMDRLQMLFAQYRPTSYSAYLRSPTYGNVNELYRL
PESKRQVRYRQCYFNPISCFRKASFLDH
BO13925.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstC-PA | 122 | CG14919-PA | 1..122 | 1..122 | 651 | 100 | Plus |
AstC-PB | 121 | CG14919-PB | 1..121 | 1..122 | 635 | 99.2 | Plus |