Clone BO13926 Report

Search the DGRC for BO13926

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:139
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG15522-RA
Protein status:BO13926.pep: validated full length
Sequenced Size:553

Clone Sequence Records

BO13926.3prime Sequence

551 bp (550 high quality bases) assembled on 2006-05-08

> BO13926.3prime
ATGGTCTAGAAAGCTTGCGAGCTGGCTGTTGGCCAGGTGGTTGTCGATGA
CCCGCTGGATGATCATCAAGCAGTGGCGCTGCCTGGCCACCGTGTTGTCG
ATCAGCTGTTCCGTGAACTGACTGGCCGCAATGTTCGTGTTGGGCGGTAT
ATCCTGCGTGCAGGATATGTACCTGTTGAAGATCTCCGTGTTCAGCGACG
TGGCCAGATACCGCTCGCTCTCGTCCTGCTGCTGCAGCTTGTCCAGCTCC
TGGGCGGCCAGCAACAGCTGATCCTTGGCCTTCTGATATGATTGCAGCTC
CTGCAGGCTGGCATACTCGGCGCTGCTCAGTTTCACGGACCTGCCGCCGT
CTTTCGTCATCTGGCGAATGTGGTACTTGCGCTCGGCCACAAAATTACCG
AGCAAGTATCCTGTTATCAGCATGAAGAAGCCAATCGTTAGCACCAGGGA
GGCACAGGTGCGCTTGGAAACGTACTCGCGGAACTCCCGAGAGCTGTTGG
CCCGCACCGCCGTCTCGTAGCTGAGTACCTGGTGCATGTCGACTGATAAC
T

BO13926.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15522-PA 522 CG15522-RA 1..519 537..19 2595 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG15522-RB 1381 CG15522-RB 669..1187 537..19 2595 100 Minus
CG15522-RA 1101 CG15522-RA 389..907 537..19 2595 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29928178..29928572 413..19 1975 100 Minus
3R 32079331 3R 29927995..29928122 537..410 640 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:21:11 has no hits.

BO13926.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:23 Download gff for BO13926.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15522-PA 1..522 18..537 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:08 Download gff for BO13926.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15522-PA 1..522 18..537 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:13:51 Download gff for BO13926.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 383..918 6..547 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:28 Download gff for BO13926.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 383..918 6..547 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:28 Download gff for BO13926.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29927989..29928121 411..547 97 -> Minus
3R 29928181..29928583 6..410 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:13:51 Download gff for BO13926.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25753711..25753843 411..547 97 -> Minus
arm_3R 25753903..25754305 6..410 98   Minus

BO13926.5prime Sequence

551 bp (550 high quality bases) assembled on 2006-05-08

> BO13926.5prime
GAAGTTATCAGTCGACATGCACCAGGTACTCAGCTACGAGACGGCGGTGC
GGGCCAACAGCTCTCGGGAGTTCCGCGAGTACGTTTCCAAGCGCACCTGT
GCCTCCCTGGTGCTAACGATTGGCTTCTTCATGCTGATAACAGGATACTT
GCTCGGTAATTTTGTGGCCGAGCGCAAGTACCACATTCGCCAGATGACGA
AAGACGGCGGCAGGTCCGTGAAACTGAGCAGCGCCGAGTATGCCAGCCTG
CAGGAGCTGCAATCATATCAGAAGGCCAAGGATCAGCTGTTGCTGGCCGC
CCAGGAGCTGGACAAGCTGCAGCAGCAGGACGAGAGCGAGCGGTATCTGG
CCACGTCGCTGAACACGGAGATCTTCAACAGGTACATATCCTGCACGCAG
GATATACCGCCCAACACGAACATTGCGGCCAGTCAGTTCACGGAACAGCT
GATCGACAACACGGTGGCCAGGCAGCGCCACTGCTTGATGATCATCCAGC
GGGTCATCGACAACCACCTGGCCAACAGCCAGCTCGCAAGCTTTCTAGAC
C

BO13926.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15522-PA 522 CG15522-RA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG15522-RB 1381 CG15522-RB 669..1187 17..535 2595 100 Plus
CG15522-RA 1101 CG15522-RA 389..907 17..535 2595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29928178..29928572 141..535 1975 100 Plus
3R 32079331 3R 29927995..29928122 17..144 640 100 Plus
Blast to na_te.dros performed on 2015-02-02 09:08:21 has no hits.

BO13926.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:24 Download gff for BO13926.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15522-PA 1..522 17..536 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:09 Download gff for BO13926.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15522-PA 1..522 17..536 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:53:06 Download gff for BO13926.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 383..918 7..548 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:12:24 Download gff for BO13926.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 383..918 7..548 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:12:24 Download gff for BO13926.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29927989..29928121 7..143 97 -> Plus
3R 29928181..29928583 144..548 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:53:06 Download gff for BO13926.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25753711..25753843 7..143 97 -> Plus
arm_3R 25753903..25754305 144..548 98   Plus

BO13926.complete Sequence

553 bp assembled on 2006-10-11

GenBank Submission: FJ632977

> BO13926.complete
GAAGTTATCAGTCGACATGCACCAGGTACTCAGCTACGAGACGGCGGTGC
GGGCCAACAGCTCTCGGGAGTTCCGCGAGTACGTTTCCAAGCGCACCTGT
GCCTCCCTGGTGCTAACGATTGGCTTCTTCATGCTGATAACAGGATACTT
GCTCGGTAATTTTGTGGCCGAGCGCAAGTACCACATTCGCCAGATGACGA
AAGACGGCGGCAGGTCCGTGAAACTGAGCAGCGCCGAGTATGCCAGCCTG
CAGGAGCTGCAATCATATCAGAAGGCCAAGGATCAGCTGTTGCTGGCCGC
CCAGGAGCTGGACAAGCTGCAGCAGCAGGACGAGAGCGAGCGGTATCTGG
CCACGTCGCTGAACACGGAGATCTTCAACAGGTACATATCCTGCACGCAG
GATATACCGCCCAACACGAACATTGCGGCCAGTCAGTTCACGGAACAGCT
GATCGACAACACGGTGGCCAGGCAGCGCCACTGCTTGATGATCATCCAGC
GGGTCATCGACAACCACCTGGCCAACAGCCAGCTCGCAAGCTTTCTAGAC
CAT

BO13926.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG15522-RB 522 CG15522-PB 1..519 17..535 2595 100 Plus
CG15522-RA 522 CG15522-PA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15522-RB 1381 CG15522-RB 669..1187 17..535 2595 100 Plus
CG15522-RA 1101 CG15522-RA 389..907 17..535 2595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29928178..29928572 141..535 1975 100 Plus
3R 32079331 3R 29927995..29928122 17..144 640 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:17:50 has no hits.

BO13926.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:21 Download gff for BO13926.complete
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 1..522 17..536 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:08 Download gff for BO13926.complete
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 386..921 7..548 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:22 Download gff for BO13926.complete
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 389..907 17..537 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:21 Download gff for BO13926.complete
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 386..921 7..548 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:08 Download gff for BO13926.complete
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 389..907 17..537 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:08 Download gff for BO13926.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29927995..29928121 17..143 100 -> Plus
3R 29928181..29928572 144..537 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:22 Download gff for BO13926.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25753717..25753843 17..143 100 -> Plus
arm_3R 25753903..25754294 144..537 99   Plus

BO13926.pep Sequence

Translation from 16 to 553

> BO13926.pep
MHQVLSYETAVRANSSREFREYVSKRTCASLVLTIGFFMLITGYLLGNFV
AERKYHIRQMTKDGGRSVKLSSAEYASLQELQSYQKAKDQLLLAAQELDK
LQQQDESERYLATSLNTEIFNRYISCTQDIPPNTNIAASQFTEQLIDNTV
ARQRHCLMIIQRVIDNHLANSQLASFLDH

BO13926.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15522-PB 173 CG15522-PB 1..173 1..173 868 100 Plus
CG15522-PA 173 CG15522-PA 1..173 1..173 868 100 Plus