Clone Sequence Records
BO13935.3prime Sequence
383 bp (382 high quality bases) assembled on 2006-05-08
> BO13935.3prime
ATGGTCTAGAAAGCTTGCCTTAAACTTTAGGGTTATCCAGAGGATTAAGA
ACACGACGAGGATGAAGAGGAACATGTAGCACATTTGGCGAGCACCACCG
CCCTGTTTGGCCAGTCGCACCACCCGCGTCATCGCGTTGCCCAGAAATCC
ACTCGTCCGGTCCATGTCGTCGTCGATGCCGCGCAGCAGCTTGTCCTGGT
AGCGCACCTCATTGCCTATATCGATGGTGAGGGACTTCAGGGCCCCGATC
TTCTGCTTCAACTCCTCCGCCGCCTGCTCGTTTTCCGCCTCCAAGGCGTC
GTGGCTCGCAGGATGGGGCCCTGAAGGGTGCTGGTTTAGGGGCTGGTACG
GGTAGTTGTTGCGGCGCATGTCGACTGATAACT
BO13935.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14084-PA | 354 | CG14084-RA | 1..351 | 369..19 | 1755 | 100 | Minus |
| CG14084-PB | 354 | CG14084-RB | 1..351 | 369..19 | 1755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bet1-RB | 987 | CG14084-RB | 300..650 | 369..19 | 1755 | 100 | Minus |
| Bet1-RA | 656 | CG14084-RA | 252..602 | 369..19 | 1755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19261750..19262100 | 369..19 | 1755 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:16:44 has no hits.
BO13935.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:34 Download gff for
BO13935.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14084-PB | 1..354 | 18..369 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:23 Download gff for
BO13935.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14084-PB | 1..354 | 18..369 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:20:22 Download gff for
BO13935.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bet1-RA | 248..607 | 11..377 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:57 Download gff for
BO13935.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bet1-RA | 248..607 | 11..377 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:57 Download gff for
BO13935.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19261746..19262105 | 11..377 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:20:22 Download gff for
BO13935.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19254846..19255205 | 11..377 | 97 | | Minus |
BO13935.5prime Sequence
383 bp (382 high quality bases) assembled on 2006-05-08
> BO13935.5prime
GAAGTTATCAGTCGACATGCGCCGCAACAACTACCCGTACCAGCCCCTAA
ACCAGCACCCTTCAGGGCCCCATCCTGCGAGCCACGACGCCTTGGAGGCG
GAAAACGAGCAGGCGGCGGAGGAGTTGAAGCAGAAGATCGGGGCCCTGAA
GTCCCTCACCATCGATATAGGCAATGAGGTGCGCTACCAGGACAAGCTGC
TGCGCGGCATCGACGACGACATGGACCGGACGAGTGGATTTCTGGGCAAC
GCGATGACGCGGGTGGTGCGACTGGCCAAACAGGGCGGTGGTGCTCGCCA
AATGTGCTACATGTTCCTCTTCATCCTCGTCGTGTTCTTAATCCTCTGGA
TAACCCTAAAGTTTAAGGCAAGCTTTCTAGACC
BO13935.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14084-PA | 354 | CG14084-RA | 1..351 | 17..367 | 1755 | 100 | Plus |
| CG14084-PB | 354 | CG14084-RB | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:44:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bet1-RB | 987 | CG14084-RB | 300..650 | 17..367 | 1755 | 100 | Plus |
| Bet1-RA | 656 | CG14084-RA | 252..602 | 17..367 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:44:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19261750..19262100 | 17..367 | 1755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 08:44:09 has no hits.
BO13935.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:35 Download gff for
BO13935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14084-PB | 1..354 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:25 Download gff for
BO13935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14084-PB | 1..354 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:12:47 Download gff for
BO13935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bet1-RA | 248..607 | 9..375 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:51 Download gff for
BO13935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bet1-RA | 248..607 | 9..375 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:51 Download gff for
BO13935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19261746..19262105 | 9..375 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:12:47 Download gff for
BO13935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19254846..19255205 | 9..375 | 97 | | Plus |
BO13935.complete Sequence
385 bp assembled on 2006-10-11
GenBank Submission: FJ632978
> BO13935.complete
GAAGTTATCAGTCGACATGCGCCGCAACAACTACCCGTACCAGCCCCTAA
ACCAGCACCCTTCAGGGCCCCATCCTGCGAGCCACGACGCCTTGGAGGCG
GAAAACGAGCAGGCGGCGGAGGAGTTGAAGCAGAAGATCGGGGCCCTGAA
GTCCCTCACCATCGATATAGGCAATGAGGTGCGCTACCAGGACAAGCTGC
TGCGCGGCATCGACGACGACATGGACCGGACGAGTGGATTTCTGGGCAAC
GCGATGACGCGGGTGGTGCGACTGGCCAAACAGGGCGGTGGTGCTCGCCA
AATGTGCTACATGTTCCTCTTCATCCTCGTCGTGTTCTTAATCCTCTGGA
TAACCCTAAAGTTTAAGGCAAGCTTTCTAGACCAT
BO13935.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bet1-RB | 354 | CG14084-PB | 1..351 | 17..367 | 1755 | 100 | Plus |
| Bet1-RA | 354 | CG14084-PA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bet1-RB | 987 | CG14084-RB | 300..650 | 17..367 | 1755 | 100 | Plus |
| Bet1-RA | 656 | CG14084-RA | 252..602 | 17..367 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19261750..19262100 | 17..367 | 1755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:00:39 has no hits.
BO13935.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:22 Download gff for
BO13935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14084-RB | 1..354 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:10 Download gff for
BO13935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14084-RB | 273..632 | 9..375 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:00 Download gff for
BO13935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bet1-RA | 252..602 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:22 Download gff for
BO13935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14084-RB | 273..632 | 9..375 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:52 Download gff for
BO13935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bet1-RA | 252..602 | 17..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:52 Download gff for
BO13935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19261750..19262100 | 17..369 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:00 Download gff for
BO13935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19254850..19255200 | 17..369 | 99 | | Plus |
BO13935.pep Sequence
Translation from 16 to 385
> BO13935.pep
MRRNNYPYQPLNQHPSGPHPASHDALEAENEQAAEELKQKIGALKSLTID
IGNEVRYQDKLLRGIDDDMDRTSGFLGNAMTRVVRLAKQGGGARQMCYMF
LFILVVFLILWITLKFKASFLDH
BO13935.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bet1-PB | 117 | CG14084-PB | 1..117 | 1..117 | 610 | 100 | Plus |
| Bet1-PA | 117 | CG14084-PA | 1..117 | 1..117 | 610 | 100 | Plus |
