Clone BO13938 Report

Search the DGRC for BO13938

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:139
Well:38
Vector:pDNR-Dual
Associated Gene/Transcriptt-RA
Protein status:BO13938.pep: Imported from assembly
Sequenced Size:1195

Clone Sequence Records

BO13938.complete Sequence

1195 bp assembled on 2009-09-17

GenBank Submission: FJ632979

> BO13938.complete
GAAGTTATCAGTCGACATGTCCTCCGGAAAGATCCTGCCACGTCGCCAGG
CGGTGCCAGTGCTCTACACCAGGGGCACCCATTACGAAGTTGGCTTCGAT
ATGGGTCGCACATTTGGGTCCATGATCAAGAACTTTCTGATCTTATCGAA
GCCCCTCAACGAGACCTACTTGCCGCTCTACCAGTCGCCAAAAGGCAGGC
AGATCTACAACGAGACCCTGGGTTCGGTGAAGGACAGCTTCCCTCAATAT
GTGCGCGAACTGGAGGGCGTGGCCGATGGTGCGGAGGTGGAATTCCATAA
GCTATTTTTGCTGCATCTGGATGAGATTCTACCGCAGGCATTGAAGCACC
AACCACGTAGCAAAAACCAACCAACCGGCTGCTCCACCATCATTGTTAAC
CAAAAGAATTGCCGCCTTTTGGGCCACACGGAGGATGCACTGACGGAGAC
CCTGAATCACTACTACTTCGTGGTGGCACACATCATCAGTGACAAGCCGC
AGGGCAAGTACAACGTTAAGGAGGAGCACTTCATGTCCCTCTGCTACGCT
GGCCATCTGCCCGGATACACTATGAGCCATAATCATCATGGATTGGTCTT
CAGCATCAACACCATCAGTGCGGAGCTCTTGCGCAGCGGCAAGACACCGC
GACACTTCATCACCCGGGCTCTGTTGGCCACCAGCAACGTGGACGATGCC
TTCCGCGTGCTCAAGGATGCGGGAGTGGGTGCAGCGGATGCCTGTTCCAT
CAATTTCACCTTCCTGGCGGATCCCCGCCAAATGTGCTACAATGTGGAGA
TGGCACCATCGCCGGACCGCAAGAATGAGTCTCATTTGAATATCAAGGAG
GTGCCGCTGGGCGAGCACAACTACCATGTCAATCAATTCGATCGCATTCG
GCAGGATCAGGCCAACGATCTGATGATTAGCTCGAGCATCTCCAGGATGC
AAACATTTGGAGCGTACAATCCGCCGATGAGCGAGCAGGATGTGCGCCAC
ATGCTGGGCGACGTGTCCGGCGGAGTTTACTGCGTCTGGCGGGAGAACAA
CAGCTGCGACGAGGTGGTCAAGACCATTGCCGTTGGCATCTTCGATCTCA
GTGCCAGGACCATTTCCCTGTATTCCGACAATCCCAGCGAGACGGAGCCA
CACTGCCGCCTGCCGCTGCTCTACAAGGCAAGCTTTCTAGACCAT

BO13938.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
t-RB 1164 CG12120-PB 1..1161 17..1177 5805 100 Plus
t-RA 1164 CG12120-PA 1..1161 17..1177 5805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
t-RB 1632 CG12120-RB 232..1392 17..1177 5805 100 Plus
t-RA 1975 CG12120-RA 232..1392 17..1177 5805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9218238..9218529 1177..886 1460 100 Minus
X 23542271 X 9218953..9219187 647..413 1175 100 Minus
X 23542271 X 9218773..9218894 769..648 610 100 Minus
X 23542271 X 9218588..9218704 885..769 585 100 Minus
X 23542271 X 9219253..9219365 412..300 565 100 Minus
X 23542271 X 9221210..9221313 301..198 520 100 Minus
X 23542271 X 9221415..9221510 198..103 480 100 Minus
X 23542271 X 9222939..9223026 104..17 440 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:38:22 has no hits.

BO13938.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:17 Download gff for BO13938.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 1..1164 17..1178 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:19:59 Download gff for BO13938.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 232..1392 17..1179 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:27 Download gff for BO13938.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 232..1392 17..1179 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:58 Download gff for BO13938.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 232..1392 17..1179 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:21 Download gff for BO13938.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 232..1392 17..1179 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:21 Download gff for BO13938.complete
Subject Subject Range Query Range Percent Splice Strand
X 9219253..9219363 302..412 100 <- Minus
X 9221210..9221313 198..301 100 <- Minus
X 9221416..9221509 104..197 100 <- Minus
X 9222940..9223026 17..103 100   Minus
X 9218236..9218529 886..1179 99 <- Minus
X 9218588..9218704 769..885 100 <- Minus
X 9218774..9218894 648..768 100 <- Minus
X 9218953..9219187 413..647 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:27 Download gff for BO13938.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9112807..9112927 648..768 100 <- Minus
arm_X 9112621..9112737 769..885 100 <- Minus
arm_X 9112269..9112562 886..1179 99 <- Minus
arm_X 9112986..9113220 413..647 100 <- Minus
arm_X 9113286..9113396 302..412 100 <- Minus
arm_X 9115243..9115346 198..301 100 <- Minus
arm_X 9115449..9115542 104..197 100 <- Minus
arm_X 9116973..9117059 17..103 100   Minus

BO13938.3prime Sequence

765 bp (678 high quality bases) assembled on 2006-05-08

> BO13938.3prime
ATGGTCTAGAAAGCTTGCCTTGTAGAGCAGCGGCAGGCGGCAGTGTGGCT
CCGTCTCGCTGGGATTGTCGGAATACAGGGAAATGGTCCTGGCACTGAGA
TCGAAGATGCCAACGGCAATGGTCTTGACCACCTCGTCGCAGCTGTTGTT
CTCCCGCCAGACGCAGTAAACTCCGCCGGACACGTCGCCCAGCATGTGGC
GCACATCCTGCTCGCTCATCGGCGGATTGTACGCTCCAAATGTTTGCATC
CTGGAGATGCTCGAGCTAATCATCAGATCGTTGGCCTGATCCTGCCGAAT
GCGATCGAATTGATTGACATGGTAGTTGTGCTCGCCCAGCGGCACCTCCT
TGATATTCAAATGAGACTCATTCTTGCGGTCCGGCGATGGTGCCATCTCC
ACATTGTAGCACATTTGGCGGGGATCCGCCAGGAAGGTGAAATTGATGGA
ACAGGCATCCGCTGCACCCACTCCCGCATCCTTGAGCACGCGGAAGGCAT
CGTCCACGTTGCTGGTGGCCAACAGAGCCCGGGTGATGAAGTGTCGCGGT
GTCTTGCCGCTGCGCAAGAGCTCCGCACTGATGGTGTTGATGCTGAAGAC
CAATCCATGATGATTATGGCTCATAGTGTATCCGGGCAGATGGCCAGCGT
AGCAGAGGGACATGAAGTGCTCCTCCTTAACGTTGTACTTTGCCCTGCGC
TTGTCACTGATGATGTGTGCCACCACGAAGTAATAGTGATTCAGGGTCTC
CGTCAGGGCATCCTC

BO13938.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12120-PA 1164 CG12120-RA 490..1161 690..19 3360 100 Minus
CG12120-PA 1164 CG12120-RA 415..481 765..699 285 97 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
t-RB 1632 CG12120-RB 646..1392 765..19 3660 99.5 Minus
t-RA 1975 CG12120-RA 646..1392 765..19 3660 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9218238..9218529 19..310 1460 100 Plus
X 23542271 X 9218953..9219169 549..765 965 96.3 Plus
X 23542271 X 9218773..9218894 427..548 610 100 Plus
X 23542271 X 9218588..9218704 311..427 585 100 Plus
Blast to na_te.dros performed on 2015-02-03 07:04:08 has no hits.

BO13938.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:36 Download gff for BO13938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12120-PA 415..1164 18..765 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:26 Download gff for BO13938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12120-PA 415..1164 18..765 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:27:17 Download gff for BO13938.3prime
Subject Subject Range Query Range Percent Splice Strand
t-RA 646..1392 19..765 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:42:46 Download gff for BO13938.3prime
Subject Subject Range Query Range Percent Splice Strand
t-RA 646..1392 19..765 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:42:46 Download gff for BO13938.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9218238..9218529 19..310 100 <- Plus
X 9218588..9218704 311..427 100 <- Plus
X 9218774..9218894 428..548 100 <- Plus
X 9218953..9219169 549..765 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:27:17 Download gff for BO13938.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9112271..9112562 19..310 100 <- Plus
arm_X 9112621..9112737 311..427 100 <- Plus
arm_X 9112807..9112927 428..548 100 <- Plus
arm_X 9112986..9113202 549..765 98   Plus

BO13938.5prime Sequence

789 bp (788 high quality bases) assembled on 2006-05-08

> BO13938.5prime
GAAGTTATCAGTCGACATGTCCTCCGGAAAGATCCTGCCACGTCGCCAGG
CGGTGCCAGTGCTCTACACCAGGGGCACCCATTACGAAGTTGGCTTCGAT
ATGGGTCGCACATTTGGGTCCATGATCAAGAACTTTCTGATCTTATCGAA
GCCCCTCAACGAGACCTACTTGCCGCTCTACCAGTCGCCAAAAGGCAGGC
AGATCTACAACGAGACCCTGGGTTCGGTGAAGGACAGCTTCCCTCAATAT
GTGCGCGAACTGGAGGGCGTGGCCGATGGTGCGGAGGTGGAATTCCATAA
GCTATTTTTGCTGCATCTGGATGAGATTCTACCGCAGGCATTGAAGCACC
AACCACGTAGCAAAAACCAACCAACCGGCTGCTCCACCATCATTGTTAAC
CAAAAGAATTGCCGCCTTTTGGGCCACACGGAGGATGCACTGACGGAGAC
CCTGAATCACTACTACTTCGTGGTGGCACACATCATCAGTGACAAGCCGC
AGGGCAAGTACAACGTTAAGGAGGAGCACTTCATGTCCCTCTGCTACGCT
GGCCATCTGCCCGGATACACTATGAGCCATAATCATCATGGATTGGTCTT
CAGCATCAACACCATCAGTGCGGAGCTCTTGCGCAGCGGCAAGACACCGC
GACACTTCATCACCCGGGCTCTGTTGGCCACCAGCAACGTGGACGATGCC
TTCCGCGTGCTCAAGGATGCGGGAGTGGGTGCAGCGGATGCCTGTTCCAT
CAATTTCACCTTCCTGGCGGATCCCCGCCAAATGTGCTA

BO13938.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12120-PA 1164 CG12120-RA 1..773 17..789 3865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
t-RB 1632 CG12120-RB 232..1004 17..789 3865 100 Plus
t-RA 1975 CG12120-RA 232..1004 17..789 3865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9218953..9219187 647..413 1175 100 Minus
X 23542271 X 9218773..9218894 769..648 610 100 Minus
X 23542271 X 9219253..9219365 412..300 565 100 Minus
X 23542271 X 9221210..9221313 301..198 520 100 Minus
X 23542271 X 9221415..9221510 198..103 480 100 Minus
X 23542271 X 9222939..9223026 104..17 440 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:02:51 has no hits.

BO13938.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:37 Download gff for BO13938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12120-PA 1..772 17..788 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:27 Download gff for BO13938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12120-PA 1..772 17..788 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:07:03 Download gff for BO13938.5prime
Subject Subject Range Query Range Percent Splice Strand
t-RA 232..1003 17..788 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:35:15 Download gff for BO13938.5prime
Subject Subject Range Query Range Percent Splice Strand
t-RA 232..1003 17..788 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:35:15 Download gff for BO13938.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9218953..9219187 413..647 100 <- Minus
X 9219253..9219363 302..412 100 <- Minus
X 9221210..9221313 198..301 100 <- Minus
X 9221416..9221509 104..197 100 <- Minus
X 9222940..9223026 17..103 100   Minus
X 9218685..9218704 769..788 100 <- Minus
X 9218774..9218894 648..768 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:07:03 Download gff for BO13938.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9112718..9112737 769..788 100 <- Minus
arm_X 9112807..9112927 648..768 100 <- Minus
arm_X 9112986..9113220 413..647 100 <- Minus
arm_X 9113286..9113396 302..412 100 <- Minus
arm_X 9115243..9115346 198..301 100 <- Minus
arm_X 9115449..9115542 104..197 100 <- Minus
arm_X 9116973..9117059 17..103 100   Minus

BO13938.pep Sequence

Translation from 16 to 1195

> BO13938.pep
MSSGKILPRRQAVPVLYTRGTHYEVGFDMGRTFGSMIKNFLILSKPLNET
YLPLYQSPKGRQIYNETLGSVKDSFPQYVRELEGVADGAEVEFHKLFLLH
LDEILPQALKHQPRSKNQPTGCSTIIVNQKNCRLLGHTEDALTETLNHYY
FVVAHIISDKPQGKYNVKEEHFMSLCYAGHLPGYTMSHNHHGLVFSINTI
SAELLRSGKTPRHFITRALLATSNVDDAFRVLKDAGVGAADACSINFTFL
ADPRQMCYNVEMAPSPDRKNESHLNIKEVPLGEHNYHVNQFDRIRQDQAN
DLMISSSISRMQTFGAYNPPMSEQDVRHMLGDVSGGVYCVWRENNSCDEV
VKTIAVGIFDLSARTISLYSDNPSETEPHCRLPLLYKASFLDH

BO13938.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
t-PB 387 CG12120-PB 1..387 1..387 2052 100 Plus
t-PA 387 CG12120-PA 1..387 1..387 2052 100 Plus