Clone Sequence Records
BO13938.complete Sequence
1195 bp assembled on 2009-09-17
GenBank Submission: FJ632979
> BO13938.complete
GAAGTTATCAGTCGACATGTCCTCCGGAAAGATCCTGCCACGTCGCCAGG
CGGTGCCAGTGCTCTACACCAGGGGCACCCATTACGAAGTTGGCTTCGAT
ATGGGTCGCACATTTGGGTCCATGATCAAGAACTTTCTGATCTTATCGAA
GCCCCTCAACGAGACCTACTTGCCGCTCTACCAGTCGCCAAAAGGCAGGC
AGATCTACAACGAGACCCTGGGTTCGGTGAAGGACAGCTTCCCTCAATAT
GTGCGCGAACTGGAGGGCGTGGCCGATGGTGCGGAGGTGGAATTCCATAA
GCTATTTTTGCTGCATCTGGATGAGATTCTACCGCAGGCATTGAAGCACC
AACCACGTAGCAAAAACCAACCAACCGGCTGCTCCACCATCATTGTTAAC
CAAAAGAATTGCCGCCTTTTGGGCCACACGGAGGATGCACTGACGGAGAC
CCTGAATCACTACTACTTCGTGGTGGCACACATCATCAGTGACAAGCCGC
AGGGCAAGTACAACGTTAAGGAGGAGCACTTCATGTCCCTCTGCTACGCT
GGCCATCTGCCCGGATACACTATGAGCCATAATCATCATGGATTGGTCTT
CAGCATCAACACCATCAGTGCGGAGCTCTTGCGCAGCGGCAAGACACCGC
GACACTTCATCACCCGGGCTCTGTTGGCCACCAGCAACGTGGACGATGCC
TTCCGCGTGCTCAAGGATGCGGGAGTGGGTGCAGCGGATGCCTGTTCCAT
CAATTTCACCTTCCTGGCGGATCCCCGCCAAATGTGCTACAATGTGGAGA
TGGCACCATCGCCGGACCGCAAGAATGAGTCTCATTTGAATATCAAGGAG
GTGCCGCTGGGCGAGCACAACTACCATGTCAATCAATTCGATCGCATTCG
GCAGGATCAGGCCAACGATCTGATGATTAGCTCGAGCATCTCCAGGATGC
AAACATTTGGAGCGTACAATCCGCCGATGAGCGAGCAGGATGTGCGCCAC
ATGCTGGGCGACGTGTCCGGCGGAGTTTACTGCGTCTGGCGGGAGAACAA
CAGCTGCGACGAGGTGGTCAAGACCATTGCCGTTGGCATCTTCGATCTCA
GTGCCAGGACCATTTCCCTGTATTCCGACAATCCCAGCGAGACGGAGCCA
CACTGCCGCCTGCCGCTGCTCTACAAGGCAAGCTTTCTAGACCAT
BO13938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
t-RB | 1164 | CG12120-PB | 1..1161 | 17..1177 | 5805 | 100 | Plus |
t-RA | 1164 | CG12120-PA | 1..1161 | 17..1177 | 5805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
t-RB | 1632 | CG12120-RB | 232..1392 | 17..1177 | 5805 | 100 | Plus |
t-RA | 1975 | CG12120-RA | 232..1392 | 17..1177 | 5805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9218238..9218529 | 1177..886 | 1460 | 100 | Minus |
X | 23542271 | X | 9218953..9219187 | 647..413 | 1175 | 100 | Minus |
X | 23542271 | X | 9218773..9218894 | 769..648 | 610 | 100 | Minus |
X | 23542271 | X | 9218588..9218704 | 885..769 | 585 | 100 | Minus |
X | 23542271 | X | 9219253..9219365 | 412..300 | 565 | 100 | Minus |
X | 23542271 | X | 9221210..9221313 | 301..198 | 520 | 100 | Minus |
X | 23542271 | X | 9221415..9221510 | 198..103 | 480 | 100 | Minus |
X | 23542271 | X | 9222939..9223026 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:38:22 has no hits.
BO13938.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:17 Download gff for
BO13938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 1..1164 | 17..1178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:19:59 Download gff for
BO13938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 232..1392 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:27 Download gff for
BO13938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 232..1392 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:58 Download gff for
BO13938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 232..1392 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:21 Download gff for
BO13938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 232..1392 | 17..1179 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:21 Download gff for
BO13938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9219253..9219363 | 302..412 | 100 | <- | Minus |
X | 9221210..9221313 | 198..301 | 100 | <- | Minus |
X | 9221416..9221509 | 104..197 | 100 | <- | Minus |
X | 9222940..9223026 | 17..103 | 100 | | Minus |
X | 9218236..9218529 | 886..1179 | 99 | <- | Minus |
X | 9218588..9218704 | 769..885 | 100 | <- | Minus |
X | 9218774..9218894 | 648..768 | 100 | <- | Minus |
X | 9218953..9219187 | 413..647 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:27 Download gff for
BO13938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9112807..9112927 | 648..768 | 100 | <- | Minus |
arm_X | 9112621..9112737 | 769..885 | 100 | <- | Minus |
arm_X | 9112269..9112562 | 886..1179 | 99 | <- | Minus |
arm_X | 9112986..9113220 | 413..647 | 100 | <- | Minus |
arm_X | 9113286..9113396 | 302..412 | 100 | <- | Minus |
arm_X | 9115243..9115346 | 198..301 | 100 | <- | Minus |
arm_X | 9115449..9115542 | 104..197 | 100 | <- | Minus |
arm_X | 9116973..9117059 | 17..103 | 100 | | Minus |
BO13938.3prime Sequence
765 bp (678 high quality bases) assembled on 2006-05-08
> BO13938.3prime
ATGGTCTAGAAAGCTTGCCTTGTAGAGCAGCGGCAGGCGGCAGTGTGGCT
CCGTCTCGCTGGGATTGTCGGAATACAGGGAAATGGTCCTGGCACTGAGA
TCGAAGATGCCAACGGCAATGGTCTTGACCACCTCGTCGCAGCTGTTGTT
CTCCCGCCAGACGCAGTAAACTCCGCCGGACACGTCGCCCAGCATGTGGC
GCACATCCTGCTCGCTCATCGGCGGATTGTACGCTCCAAATGTTTGCATC
CTGGAGATGCTCGAGCTAATCATCAGATCGTTGGCCTGATCCTGCCGAAT
GCGATCGAATTGATTGACATGGTAGTTGTGCTCGCCCAGCGGCACCTCCT
TGATATTCAAATGAGACTCATTCTTGCGGTCCGGCGATGGTGCCATCTCC
ACATTGTAGCACATTTGGCGGGGATCCGCCAGGAAGGTGAAATTGATGGA
ACAGGCATCCGCTGCACCCACTCCCGCATCCTTGAGCACGCGGAAGGCAT
CGTCCACGTTGCTGGTGGCCAACAGAGCCCGGGTGATGAAGTGTCGCGGT
GTCTTGCCGCTGCGCAAGAGCTCCGCACTGATGGTGTTGATGCTGAAGAC
CAATCCATGATGATTATGGCTCATAGTGTATCCGGGCAGATGGCCAGCGT
AGCAGAGGGACATGAAGTGCTCCTCCTTAACGTTGTACTTTGCCCTGCGC
TTGTCACTGATGATGTGTGCCACCACGAAGTAATAGTGATTCAGGGTCTC
CGTCAGGGCATCCTC
BO13938.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12120-PA | 1164 | CG12120-RA | 490..1161 | 690..19 | 3360 | 100 | Minus |
CG12120-PA | 1164 | CG12120-RA | 415..481 | 765..699 | 285 | 97 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
t-RB | 1632 | CG12120-RB | 646..1392 | 765..19 | 3660 | 99.5 | Minus |
t-RA | 1975 | CG12120-RA | 646..1392 | 765..19 | 3660 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9218238..9218529 | 19..310 | 1460 | 100 | Plus |
X | 23542271 | X | 9218953..9219169 | 549..765 | 965 | 96.3 | Plus |
X | 23542271 | X | 9218773..9218894 | 427..548 | 610 | 100 | Plus |
X | 23542271 | X | 9218588..9218704 | 311..427 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:04:08 has no hits.
BO13938.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:36 Download gff for
BO13938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12120-PA | 415..1164 | 18..765 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:26 Download gff for
BO13938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12120-PA | 415..1164 | 18..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:27:17 Download gff for
BO13938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 646..1392 | 19..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:42:46 Download gff for
BO13938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 646..1392 | 19..765 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:42:46 Download gff for
BO13938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9218238..9218529 | 19..310 | 100 | <- | Plus |
X | 9218588..9218704 | 311..427 | 100 | <- | Plus |
X | 9218774..9218894 | 428..548 | 100 | <- | Plus |
X | 9218953..9219169 | 549..765 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:27:17 Download gff for
BO13938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9112271..9112562 | 19..310 | 100 | <- | Plus |
arm_X | 9112621..9112737 | 311..427 | 100 | <- | Plus |
arm_X | 9112807..9112927 | 428..548 | 100 | <- | Plus |
arm_X | 9112986..9113202 | 549..765 | 98 | | Plus |
BO13938.5prime Sequence
789 bp (788 high quality bases) assembled on 2006-05-08
> BO13938.5prime
GAAGTTATCAGTCGACATGTCCTCCGGAAAGATCCTGCCACGTCGCCAGG
CGGTGCCAGTGCTCTACACCAGGGGCACCCATTACGAAGTTGGCTTCGAT
ATGGGTCGCACATTTGGGTCCATGATCAAGAACTTTCTGATCTTATCGAA
GCCCCTCAACGAGACCTACTTGCCGCTCTACCAGTCGCCAAAAGGCAGGC
AGATCTACAACGAGACCCTGGGTTCGGTGAAGGACAGCTTCCCTCAATAT
GTGCGCGAACTGGAGGGCGTGGCCGATGGTGCGGAGGTGGAATTCCATAA
GCTATTTTTGCTGCATCTGGATGAGATTCTACCGCAGGCATTGAAGCACC
AACCACGTAGCAAAAACCAACCAACCGGCTGCTCCACCATCATTGTTAAC
CAAAAGAATTGCCGCCTTTTGGGCCACACGGAGGATGCACTGACGGAGAC
CCTGAATCACTACTACTTCGTGGTGGCACACATCATCAGTGACAAGCCGC
AGGGCAAGTACAACGTTAAGGAGGAGCACTTCATGTCCCTCTGCTACGCT
GGCCATCTGCCCGGATACACTATGAGCCATAATCATCATGGATTGGTCTT
CAGCATCAACACCATCAGTGCGGAGCTCTTGCGCAGCGGCAAGACACCGC
GACACTTCATCACCCGGGCTCTGTTGGCCACCAGCAACGTGGACGATGCC
TTCCGCGTGCTCAAGGATGCGGGAGTGGGTGCAGCGGATGCCTGTTCCAT
CAATTTCACCTTCCTGGCGGATCCCCGCCAAATGTGCTA
BO13938.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12120-PA | 1164 | CG12120-RA | 1..773 | 17..789 | 3865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
t-RB | 1632 | CG12120-RB | 232..1004 | 17..789 | 3865 | 100 | Plus |
t-RA | 1975 | CG12120-RA | 232..1004 | 17..789 | 3865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:02:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9218953..9219187 | 647..413 | 1175 | 100 | Minus |
X | 23542271 | X | 9218773..9218894 | 769..648 | 610 | 100 | Minus |
X | 23542271 | X | 9219253..9219365 | 412..300 | 565 | 100 | Minus |
X | 23542271 | X | 9221210..9221313 | 301..198 | 520 | 100 | Minus |
X | 23542271 | X | 9221415..9221510 | 198..103 | 480 | 100 | Minus |
X | 23542271 | X | 9222939..9223026 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:02:51 has no hits.
BO13938.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:37 Download gff for
BO13938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12120-PA | 1..772 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:27 Download gff for
BO13938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12120-PA | 1..772 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:07:03 Download gff for
BO13938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 232..1003 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:35:15 Download gff for
BO13938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 232..1003 | 17..788 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:35:15 Download gff for
BO13938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9218953..9219187 | 413..647 | 100 | <- | Minus |
X | 9219253..9219363 | 302..412 | 100 | <- | Minus |
X | 9221210..9221313 | 198..301 | 100 | <- | Minus |
X | 9221416..9221509 | 104..197 | 100 | <- | Minus |
X | 9222940..9223026 | 17..103 | 100 | | Minus |
X | 9218685..9218704 | 769..788 | 100 | <- | Minus |
X | 9218774..9218894 | 648..768 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:07:03 Download gff for
BO13938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9112718..9112737 | 769..788 | 100 | <- | Minus |
arm_X | 9112807..9112927 | 648..768 | 100 | <- | Minus |
arm_X | 9112986..9113220 | 413..647 | 100 | <- | Minus |
arm_X | 9113286..9113396 | 302..412 | 100 | <- | Minus |
arm_X | 9115243..9115346 | 198..301 | 100 | <- | Minus |
arm_X | 9115449..9115542 | 104..197 | 100 | <- | Minus |
arm_X | 9116973..9117059 | 17..103 | 100 | | Minus |
BO13938.pep Sequence
Translation from 16 to 1195
> BO13938.pep
MSSGKILPRRQAVPVLYTRGTHYEVGFDMGRTFGSMIKNFLILSKPLNET
YLPLYQSPKGRQIYNETLGSVKDSFPQYVRELEGVADGAEVEFHKLFLLH
LDEILPQALKHQPRSKNQPTGCSTIIVNQKNCRLLGHTEDALTETLNHYY
FVVAHIISDKPQGKYNVKEEHFMSLCYAGHLPGYTMSHNHHGLVFSINTI
SAELLRSGKTPRHFITRALLATSNVDDAFRVLKDAGVGAADACSINFTFL
ADPRQMCYNVEMAPSPDRKNESHLNIKEVPLGEHNYHVNQFDRIRQDQAN
DLMISSSISRMQTFGAYNPPMSEQDVRHMLGDVSGGVYCVWRENNSCDEV
VKTIAVGIFDLSARTISLYSDNPSETEPHCRLPLLYKASFLDH
BO13938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:00:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
t-PB | 387 | CG12120-PB | 1..387 | 1..387 | 2052 | 100 | Plus |
t-PA | 387 | CG12120-PA | 1..387 | 1..387 | 2052 | 100 | Plus |