Clone Sequence Records
BO13944.3prime Sequence
688 bp (618 high quality bases) assembled on 2006-05-08
> BO13944.3prime
ATGGTCTAGAAAGCTTGCTTCCTTTTCGAAGAACTCGTCGTAGGGAATGT
TGGCCCACAGACTCTGTACGATGGCACTGAAGGCCTTGGCGCAGGCCTCG
TTGATCTTCGGCTGGACATCGAGGGCCAGGGTGCTCCACTCCTGGTTCAG
CACCTTCAGCGTGCTGTCGCGCAGCTCCTTGTTGTCGTTGAACAGATTCG
ACAGGTCAAAGTGGCCACCCTTGATCTTGGTGGCCGTCTTGTAGTCGGTG
ATGTTGAGATAGGTGTGGCCATCGGAGCGCTTCACTGGCTCGGCGGTAAT
CCAAACCTTTGTGTGCACATCGTTCAACCGAATGGTCAGGTCGCCCTTGC
TGACAATGGGCAGGATGAGCAGCTTGCCGTCTACGTCGTACTTGGCCCGC
ACCTCCAGTTCCGGATTGTCCAAGAGCAGGGTCAGCTTGAGCGGCCTGGT
GAGGTCCTTGGTGAATCCCTTCAGGCTCTTGACCATCATCGAGTTGGCCA
GATTGTAGAGCTTGGCATCGCTCATGGTCAGTTTGAACTTTATCGACTCC
GAGTGGCCGCCGCTCTCGATGAACATCGTGCCCAGGGCAATGGGCTCCAG
CGCGGCCACCTGCCGCTCCGGAATGCCATTCTTGAAGGCTTGGAAAAAGG
TTTGCGCCTGAGCCAGCAAGCACGACTCATCCTGGAGC
BO13944.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2650-PA | 783 | CG2650-RA | 111..780 | 688..19 | 3350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:21:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2650-RA | 1013 | CG2650-RA | 177..846 | 688..19 | 3350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:21:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2693156..2693626 | 218..688 | 2355 | 100 | Plus |
X | 23542271 | X | 2692899..2693098 | 19..218 | 1000 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 12:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 3197..3232 | 37..2 | 117 | 80.6 | Minus |
BO13944.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:45 Download gff for
BO13944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2650-PA | 111..783 | 16..688 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:39 Download gff for
BO13944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2650-PA | 111..783 | 16..688 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:13:48 Download gff for
BO13944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2650-RA | 177..850 | 15..688 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:07:56 Download gff for
BO13944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2650-RA | 177..850 | 15..688 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:07:56 Download gff for
BO13944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2692895..2693097 | 15..217 | 99 | <- | Plus |
X | 2693156..2693626 | 218..688 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:13:48 Download gff for
BO13944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2586928..2587130 | 15..217 | 99 | <- | Plus |
arm_X | 2587189..2587659 | 218..688 | 100 | | Plus |
BO13944.5prime Sequence
717 bp (658 high quality bases) assembled on 2006-05-08
> BO13944.5prime
GAAGTTATCAGTCGACATGCAGCTAACCGGTGCCTCTATGTTCCTCGTAT
GGGTGGGTCTACTCAGCTGGGTTTCCTGCAGAGTGGACGCCTCCGAAGGA
TTTCCATCGCCGCTGAAGCGCTGCAAGCTCCAGGATGAGTCGTGCTTGCT
GGCTCAGGCGCAAACCTTTTTCCAAGCCTTCAAGAATGGCATTCCGGAGC
GGCAGGTGGCCGCGCTGGAGCCCATTGCCCTGGGCACGATGTTCATCGAG
AGCGGCGGCCACTCGGAGTCGATAAAGTTCAAACTGACCATGAGCGATGC
CAAGCTCTACAATCTGGCCAACTCGATGATGGTCAAGAGCCTGAAGGGAT
TCACCAAGGACCTCACCAGGCCGCTCAAGCTGACCCTGCTCTTGGACAAT
CCGGAACTGGAGGTGCGGGCCAAGTACGACGTAGACGGCAAGCTGCTCAT
CCTGCCCATTGTCAGCAAGGGCGACCTGACCATTCGGTTGAACGATGTGC
ACACAAAGGTTTGGATTACCGCCGAGCCAGTGAAGCGCTCCGATGGCCAC
ACCTATCTCAACATCACCGACTACAAGACGGCCACCAAGATCAAGGGTGG
CCACTTTGACCTGTCGAATCTGTTCAACGACAACAAGGAGCTGCGCGACA
GCACGCTGAAAGGGCTGAACCAGGAGTGGAGCACCCTGGCCCTCGATGTC
CAGCCGAAGATCAACGA
BO13944.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2650-PA | 783 | CG2650-RA | 1..701 | 17..717 | 3455 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:49:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2650-RA | 1013 | CG2650-RA | 67..767 | 17..717 | 3475 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2693156..2693648 | 597..105 | 2465 | 100 | Minus |
X | 23542271 | X | 2692978..2693098 | 717..597 | 575 | 98.3 | Minus |
X | 23542271 | X | 2693733..2693820 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:49:24 has no hits.
BO13944.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:46 Download gff for
BO13944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2650-PA | 1..700 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:41 Download gff for
BO13944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2650-PA | 1..700 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:48:15 Download gff for
BO13944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2650-RA | 67..766 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:24:45 Download gff for
BO13944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2650-RA | 67..766 | 17..716 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:24:45 Download gff for
BO13944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2692979..2693097 | 598..716 | 98 | <- | Minus |
X | 2693156..2693648 | 105..597 | 100 | <- | Minus |
X | 2693733..2693820 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:48:15 Download gff for
BO13944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2587012..2587130 | 598..716 | 98 | <- | Minus |
arm_X | 2587189..2587681 | 105..597 | 100 | <- | Minus |
arm_X | 2587766..2587853 | 17..104 | 100 | | Minus |
BO13944.complete Sequence
814 bp assembled on 2006-10-11
GenBank Submission: FJ632980
> BO13944.complete
GAAGTTATCAGTCGACATGCAGCTAACCGGTGCCTCTATGTTCCTCGTAT
GGGTGGGTCTACTCAGCTGGGTTTCCTGCAGAGTGGACGCCTCCGAAGGA
TTTCCATCGCCGCTGAAGCGCTGCAAGCTCCAGGATGAGTCGTGCTTGCT
GGCTCAGGCGCAAACCTTTTTCCAAGCCTTCAAGAATGGCATTCCGGAGC
GGCAGGTGGCCGCGCTGGAGCCCATTGCCCTGGGCACGATGTTCATCGAG
AGCGGCGGCCACTCGGAGTCGATAAAGTTCAAACTGACCATGAGCGATGC
CAAGCTCTACAATCTGGCCAACTCGATGATGGTCAAGAGCCTGAAGGGAT
TCACCAAGGACCTCACCAGGCCGCTCAAGCTGACCCTGCTCTTGGACAAT
CCGGAACTGGAGGTGCGGGCCAAGTACGACGTAGACGGCAAGCTGCTCAT
CCTGCCCATTGTCAGCAAGGGCGACCTGACCATTCGGTTGAACGATGTGC
ACACAAAGGTTTGGATTACCGCCGAGCCAGTGAAGCGCTCCGATGGCCAC
ACCTATCTCAACATCACCGACTACAAGACGGCCACCAAGATCAAGGGTGG
CCACTTTGACCTGTCGAATCTGTTCAACGACAACAAGGAGCTGCGCGACA
GCACGCTGAAGGTGCTGAACCAGGAGTGGAGCACCCTGGCCCTCGATGTC
CAGCCGAAGATCAACGAGGCCTGCGCCAAGGCCTTCAGTGCCATCGTACA
GAGTCTGTGGGCCAACATTCCCTACGACGAGTTCTTCGAAAAGGAAGCAA
GCTTTCTAGACCAT
BO13944.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2650-RA | 783 | CG2650-PA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2650-RA | 1013 | CG2650-RA | 67..846 | 17..796 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2693156..2693648 | 597..105 | 2465 | 100 | Minus |
X | 23542271 | X | 2692899..2693098 | 796..597 | 1000 | 100 | Minus |
X | 23542271 | X | 2693733..2693820 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 22:29:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 3197..3232 | 778..813 | 117 | 80.6 | Plus |
BO13944.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:23 Download gff for
BO13944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2650-RA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:12 Download gff for
BO13944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2650-RA | 67..850 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:54 Download gff for
BO13944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2650-RA | 67..846 | 17..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:23 Download gff for
BO13944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2650-RA | 67..850 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:41 Download gff for
BO13944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2650-RA | 67..846 | 17..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:41 Download gff for
BO13944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2692896..2693097 | 598..798 | 99 | <- | Minus |
X | 2693156..2693648 | 105..597 | 100 | <- | Minus |
X | 2693733..2693820 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:54 Download gff for
BO13944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2586929..2587130 | 598..798 | 99 | <- | Minus |
arm_X | 2587189..2587681 | 105..597 | 100 | <- | Minus |
arm_X | 2587766..2587853 | 17..104 | 100 | | Minus |
BO13944.pep Sequence
Translation from 16 to 814
> BO13944.pep
MQLTGASMFLVWVGLLSWVSCRVDASEGFPSPLKRCKLQDESCLLAQAQT
FFQAFKNGIPERQVAALEPIALGTMFIESGGHSESIKFKLTMSDAKLYNL
ANSMMVKSLKGFTKDLTRPLKLTLLLDNPELEVRAKYDVDGKLLILPIVS
KGDLTIRLNDVHTKVWITAEPVKRSDGHTYLNITDYKTATKIKGGHFDLS
NLFNDNKELRDSTLKVLNQEWSTLALDVQPKINEACAKAFSAIVQSLWAN
IPYDEFFEKEASFLDH
BO13944.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2650-PA | 260 | CG2650-PA | 1..260 | 1..260 | 1341 | 100 | Plus |
to-PB | 249 | CG11853-PB | 1..249 | 8..261 | 295 | 29.4 | Plus |
to-PA | 249 | CG11853-PA | 1..249 | 8..261 | 295 | 29.4 | Plus |
CG11854-PB | 250 | CG11854-PB | 23..248 | 29..257 | 288 | 29.1 | Plus |
CG11852-PA | 250 | CG11852-PA | 1..247 | 8..257 | 243 | 26.6 | Plus |