Clone BO13944 Report

Search the DGRC for BO13944

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:139
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG2650-RA
Protein status:BO13944.pep: validated full length
Sequenced Size:814

Clone Sequence Records

BO13944.3prime Sequence

688 bp (618 high quality bases) assembled on 2006-05-08

> BO13944.3prime
ATGGTCTAGAAAGCTTGCTTCCTTTTCGAAGAACTCGTCGTAGGGAATGT
TGGCCCACAGACTCTGTACGATGGCACTGAAGGCCTTGGCGCAGGCCTCG
TTGATCTTCGGCTGGACATCGAGGGCCAGGGTGCTCCACTCCTGGTTCAG
CACCTTCAGCGTGCTGTCGCGCAGCTCCTTGTTGTCGTTGAACAGATTCG
ACAGGTCAAAGTGGCCACCCTTGATCTTGGTGGCCGTCTTGTAGTCGGTG
ATGTTGAGATAGGTGTGGCCATCGGAGCGCTTCACTGGCTCGGCGGTAAT
CCAAACCTTTGTGTGCACATCGTTCAACCGAATGGTCAGGTCGCCCTTGC
TGACAATGGGCAGGATGAGCAGCTTGCCGTCTACGTCGTACTTGGCCCGC
ACCTCCAGTTCCGGATTGTCCAAGAGCAGGGTCAGCTTGAGCGGCCTGGT
GAGGTCCTTGGTGAATCCCTTCAGGCTCTTGACCATCATCGAGTTGGCCA
GATTGTAGAGCTTGGCATCGCTCATGGTCAGTTTGAACTTTATCGACTCC
GAGTGGCCGCCGCTCTCGATGAACATCGTGCCCAGGGCAATGGGCTCCAG
CGCGGCCACCTGCCGCTCCGGAATGCCATTCTTGAAGGCTTGGAAAAAGG
TTTGCGCCTGAGCCAGCAAGCACGACTCATCCTGGAGC

BO13944.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2650-PA 783 CG2650-RA 111..780 688..19 3350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG2650-RA 1013 CG2650-RA 177..846 688..19 3350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2693156..2693626 218..688 2355 100 Plus
X 23542271 X 2692899..2693098 19..218 1000 100 Plus
Blast to na_te.dros performed 2015-02-12 12:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 3197..3232 37..2 117 80.6 Minus

BO13944.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:45 Download gff for BO13944.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2650-PA 111..783 16..688 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:39 Download gff for BO13944.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2650-PA 111..783 16..688 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:13:48 Download gff for BO13944.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2650-RA 177..850 15..688 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:07:56 Download gff for BO13944.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2650-RA 177..850 15..688 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:07:56 Download gff for BO13944.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2692895..2693097 15..217 99 <- Plus
X 2693156..2693626 218..688 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:13:48 Download gff for BO13944.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2586928..2587130 15..217 99 <- Plus
arm_X 2587189..2587659 218..688 100   Plus

BO13944.5prime Sequence

717 bp (658 high quality bases) assembled on 2006-05-08

> BO13944.5prime
GAAGTTATCAGTCGACATGCAGCTAACCGGTGCCTCTATGTTCCTCGTAT
GGGTGGGTCTACTCAGCTGGGTTTCCTGCAGAGTGGACGCCTCCGAAGGA
TTTCCATCGCCGCTGAAGCGCTGCAAGCTCCAGGATGAGTCGTGCTTGCT
GGCTCAGGCGCAAACCTTTTTCCAAGCCTTCAAGAATGGCATTCCGGAGC
GGCAGGTGGCCGCGCTGGAGCCCATTGCCCTGGGCACGATGTTCATCGAG
AGCGGCGGCCACTCGGAGTCGATAAAGTTCAAACTGACCATGAGCGATGC
CAAGCTCTACAATCTGGCCAACTCGATGATGGTCAAGAGCCTGAAGGGAT
TCACCAAGGACCTCACCAGGCCGCTCAAGCTGACCCTGCTCTTGGACAAT
CCGGAACTGGAGGTGCGGGCCAAGTACGACGTAGACGGCAAGCTGCTCAT
CCTGCCCATTGTCAGCAAGGGCGACCTGACCATTCGGTTGAACGATGTGC
ACACAAAGGTTTGGATTACCGCCGAGCCAGTGAAGCGCTCCGATGGCCAC
ACCTATCTCAACATCACCGACTACAAGACGGCCACCAAGATCAAGGGTGG
CCACTTTGACCTGTCGAATCTGTTCAACGACAACAAGGAGCTGCGCGACA
GCACGCTGAAAGGGCTGAACCAGGAGTGGAGCACCCTGGCCCTCGATGTC
CAGCCGAAGATCAACGA

BO13944.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2650-PA 783 CG2650-RA 1..701 17..717 3455 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2650-RA 1013 CG2650-RA 67..767 17..717 3475 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2693156..2693648 597..105 2465 100 Minus
X 23542271 X 2692978..2693098 717..597 575 98.3 Minus
X 23542271 X 2693733..2693820 104..17 440 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:49:24 has no hits.

BO13944.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:46 Download gff for BO13944.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2650-PA 1..700 17..716 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:41 Download gff for BO13944.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2650-PA 1..700 17..716 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:48:15 Download gff for BO13944.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2650-RA 67..766 17..716 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:24:45 Download gff for BO13944.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2650-RA 67..766 17..716 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:24:45 Download gff for BO13944.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2692979..2693097 598..716 98 <- Minus
X 2693156..2693648 105..597 100 <- Minus
X 2693733..2693820 17..104 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:48:15 Download gff for BO13944.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2587012..2587130 598..716 98 <- Minus
arm_X 2587189..2587681 105..597 100 <- Minus
arm_X 2587766..2587853 17..104 100   Minus

BO13944.complete Sequence

814 bp assembled on 2006-10-11

GenBank Submission: FJ632980

> BO13944.complete
GAAGTTATCAGTCGACATGCAGCTAACCGGTGCCTCTATGTTCCTCGTAT
GGGTGGGTCTACTCAGCTGGGTTTCCTGCAGAGTGGACGCCTCCGAAGGA
TTTCCATCGCCGCTGAAGCGCTGCAAGCTCCAGGATGAGTCGTGCTTGCT
GGCTCAGGCGCAAACCTTTTTCCAAGCCTTCAAGAATGGCATTCCGGAGC
GGCAGGTGGCCGCGCTGGAGCCCATTGCCCTGGGCACGATGTTCATCGAG
AGCGGCGGCCACTCGGAGTCGATAAAGTTCAAACTGACCATGAGCGATGC
CAAGCTCTACAATCTGGCCAACTCGATGATGGTCAAGAGCCTGAAGGGAT
TCACCAAGGACCTCACCAGGCCGCTCAAGCTGACCCTGCTCTTGGACAAT
CCGGAACTGGAGGTGCGGGCCAAGTACGACGTAGACGGCAAGCTGCTCAT
CCTGCCCATTGTCAGCAAGGGCGACCTGACCATTCGGTTGAACGATGTGC
ACACAAAGGTTTGGATTACCGCCGAGCCAGTGAAGCGCTCCGATGGCCAC
ACCTATCTCAACATCACCGACTACAAGACGGCCACCAAGATCAAGGGTGG
CCACTTTGACCTGTCGAATCTGTTCAACGACAACAAGGAGCTGCGCGACA
GCACGCTGAAGGTGCTGAACCAGGAGTGGAGCACCCTGGCCCTCGATGTC
CAGCCGAAGATCAACGAGGCCTGCGCCAAGGCCTTCAGTGCCATCGTACA
GAGTCTGTGGGCCAACATTCCCTACGACGAGTTCTTCGAAAAGGAAGCAA
GCTTTCTAGACCAT

BO13944.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2650-RA 783 CG2650-PA 1..780 17..796 3900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2650-RA 1013 CG2650-RA 67..846 17..796 3900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2693156..2693648 597..105 2465 100 Minus
X 23542271 X 2692899..2693098 796..597 1000 100 Minus
X 23542271 X 2693733..2693820 104..17 440 100 Minus
Blast to na_te.dros performed 2014-11-26 22:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 3197..3232 778..813 117 80.6 Plus

BO13944.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:23 Download gff for BO13944.complete
Subject Subject Range Query Range Percent Splice Strand
CG2650-RA 1..783 17..799 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:12 Download gff for BO13944.complete
Subject Subject Range Query Range Percent Splice Strand
CG2650-RA 67..850 17..800 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:54 Download gff for BO13944.complete
Subject Subject Range Query Range Percent Splice Strand
CG2650-RA 67..846 17..798 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:23 Download gff for BO13944.complete
Subject Subject Range Query Range Percent Splice Strand
CG2650-RA 67..850 17..800 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:41 Download gff for BO13944.complete
Subject Subject Range Query Range Percent Splice Strand
CG2650-RA 67..846 17..798 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:41 Download gff for BO13944.complete
Subject Subject Range Query Range Percent Splice Strand
X 2692896..2693097 598..798 99 <- Minus
X 2693156..2693648 105..597 100 <- Minus
X 2693733..2693820 17..104 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:54 Download gff for BO13944.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2586929..2587130 598..798 99 <- Minus
arm_X 2587189..2587681 105..597 100 <- Minus
arm_X 2587766..2587853 17..104 100   Minus

BO13944.pep Sequence

Translation from 16 to 814

> BO13944.pep
MQLTGASMFLVWVGLLSWVSCRVDASEGFPSPLKRCKLQDESCLLAQAQT
FFQAFKNGIPERQVAALEPIALGTMFIESGGHSESIKFKLTMSDAKLYNL
ANSMMVKSLKGFTKDLTRPLKLTLLLDNPELEVRAKYDVDGKLLILPIVS
KGDLTIRLNDVHTKVWITAEPVKRSDGHTYLNITDYKTATKIKGGHFDLS
NLFNDNKELRDSTLKVLNQEWSTLALDVQPKINEACAKAFSAIVQSLWAN
IPYDEFFEKEASFLDH

BO13944.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2650-PA 260 CG2650-PA 1..260 1..260 1341 100 Plus
to-PB 249 CG11853-PB 1..249 8..261 295 29.4 Plus
to-PA 249 CG11853-PA 1..249 8..261 295 29.4 Plus
CG11854-PB 250 CG11854-PB 23..248 29..257 288 29.1 Plus
CG11852-PA 250 CG11852-PA 1..247 8..257 243 26.6 Plus