Clone BO13948 Report

Search the DGRC for BO13948

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:139
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG17065-RA
Protein status:BO13948.pep: Imported from assembly
Sequenced Size:1285

Clone Sequence Records

BO13948.3prime Sequence

747 bp (716 high quality bases) assembled on 2006-05-08

> BO13948.3prime
ATGGTCTAGAAAGCTTGCCTTGACAGTCCTATGAACACATACGCCAGCGA
TCCAGGTGGATAGCACCCGGAGCTGGTCGTCCAGGAGAACGAAGTCCGCG
TCCGAGCCAAAGTCCAGGGTGCCCTTCTGCTTTTCGATCTTCAGGCACTG
TGCTGGATGCAAGGTGGCCGCCTCGATGGCATAGACCACGGAGCAGTCGG
TCGCCTTCTGGAAGATCCGCACGCACTCGTCCATCGGGGCGATGCTGCCG
CACAGCGTCTCTGTGCCTGCGATGAACGCCTTGCCCTGCTTAACCTGCAG
CGGCAGCTGTCCGATGTGGTGGACACCCTCCTCGAGGCCCAGCGCCGATA
TGGCGTCCGTCACCAGGATCAGGCCCTGCGGATGCGTGCGGTAGGCGATC
CTCAGTGCCGCCGGATGAGTGTGCACTCCGTCCGAGATGATGCCGAAGTA
CACGGTCCTACCGTGCGGCACTGCGTCCGAGGCCAGCAGTCCCACCAGGC
CGGGATCGCGGTGATGGAACGGCAGCATGGCGTTGAACAGATGCGTGATC
AGCGTGGCGCCCTGCTGCACGGCCCTCTCTCCGTCGCTTAGCGAGGCCAT
CGAGTGGCCCAGGGCCACGGTGATGCCACGCTCCACCAGCTGGCCAATCA
CCTCCGGGTCGGTGACCTTCTCCGGCGCCAGGGTGATGATTTTAATGCGT
TCCAGCGAGCCGTACGTCTCCTTCAGCGTGCTGAGTCCCTTATCAAT

BO13948.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17065-PA 1254 CG17065-RA 523..1251 747..19 3645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17065-RD 1624 CG17065-RD 685..1413 747..19 3645 100 Minus
CG17065-RA 1556 CG17065-RA 617..1345 747..19 3645 100 Minus
CG17065-RB 1598 CG17065-RB 665..1387 741..19 3615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20255132..20255675 198..741 2720 100 Plus
X 23542271 X 20254903..20255082 19..198 900 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:30:55 has no hits.

BO13948.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:52 Download gff for BO13948.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17065-PA 523..1254 18..747 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:51 Download gff for BO13948.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17065-PA 523..1254 18..747 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:00:25 Download gff for BO13948.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 617..1349 13..747 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:07 Download gff for BO13948.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 617..1349 13..747 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:07 Download gff for BO13948.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20254899..20255081 13..197 98 <- Plus
X 20255132..20255678 198..747 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:00:25 Download gff for BO13948.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20125925..20126107 13..197 98 <- Plus
arm_X 20126158..20126704 198..747 99   Plus

BO13948.5prime Sequence

553 bp (545 high quality bases) assembled on 2006-05-08

> BO13948.5prime
GAAGTTATCAGTCGACATGGACGTTCGGATTAAGTGCAACAGCGAGGAGC
CAGAGTCTCCGGAGCAGAAGATCCTGGCGAGCAGCCAGCGCCTGCTGCAG
TTCACCAACTGCCGCCTTGTACGCGACCACCGGATCATCCACGACGATCT
GTGGGTTCGCGACGGTCGGATCGTGAACCCAGAGCCTGTGTTCTTCGACG
AGCGGACCAAGGCCCACTGTCGCATCGACTGCGGGGGCGCCATCATCGCG
CCCGGCTACATCGACCTCCAGATCAATGGTGGCTATGGCGTGGACTTCTC
GTACGACACGGAGACCATCGAGGAGGGCGTGGCCACGGTGGCACGCGGCC
TGGTCAAGAGCGGAGTCACCTCCTTCTGTCCCACGCTGGTGACCTCGCCC
AGCGACAGCTACCACACCATCCTGCCGCGCATTCCCGCAGAGGTTCCCAA
GGGCGCCGGCATACTGGGCATCCATGGCGGAGGGTCCGTTTATCAATCCG
CAGAAAAAGGGCGCGCATCCGGAGCACTGCATCCAGACCATTGATAAAGG
ACT

BO13948.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17065-PA 1254 CG17065-RA 1..460 17..476 2300 100 Plus
CG17065-PA 1254 CG17065-RA 460..536 477..553 360 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17065-RD 1624 CG17065-RD 163..698 17..553 2645 99.6 Plus
CG17065-RA 1556 CG17065-RA 95..630 17..553 2645 99.6 Plus
CG17065-RB 1598 CG17065-RB 95..624 17..547 2630 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20256773..20257037 281..17 1325 100 Minus
X 23542271 X 20255765..20256033 547..278 1300 99.6 Minus
Blast to na_te.dros performed on 2015-02-02 09:06:51 has no hits.

BO13948.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:53 Download gff for BO13948.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17065-PA 1..536 17..553 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:52 Download gff for BO13948.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17065-PA 1..536 17..553 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:52:54 Download gff for BO13948.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 90..630 9..553 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:12:08 Download gff for BO13948.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 90..630 9..553 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:12:08 Download gff for BO13948.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20255762..20256032 279..553 98 <- Minus
X 20256776..20257042 9..278 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:52:54 Download gff for BO13948.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20126788..20127058 279..553 98 <- Minus
arm_X 20127802..20128068 9..278 98   Minus

BO13948.complete Sequence

1285 bp assembled on 2008-11-10

GenBank Submission: KX797237

> BO13948.complete
GAAGTTATCAGTCGACATGGACGTTCGGATTAAGTGCAACAGCGAGGAGC
CAGAGTCTCCGGAGCAGAAGATCCTGGCGAGCAGCCAGCGCCTGCTGCAG
TTCACCAACTGCCGCCTTGTACGCGACCACCGGATCATCCACGACGATCT
GTGGGTTCGCGACGGTCGGATCGTGAACCCAGAGCCTGTGTTCTTCGACG
AGCGGACCAAGGCCCACTGTCGCATCGACTGCGGGGGCGCCATCATCGCG
CCCGGCTACATCGACCTCCAGATCAATGGTGGCTATGGCGTGGACTTCTC
GTACGACACGGAGACCATCGAGGAGGGCGTGGCCACGGTGGCACGCGGCC
TGGTCAAGAGCGGAGTCACCTCCTTCTGTCCCACGCTGGTGACCTCGCCC
AGCGACAGCTACCACACCATCCTGCCGCGCATTCCCGCAGAGGTTCCCAA
GGGCGCCGGCATACTGGGCATCCATGCGGAGGGTCCGTTTATCAATCCGC
AGAAAAAGGGCGCGCATCCGGAGCACTGCATCCAGACCATTGATAAGGGA
CTCAGCACGCTGAAGGAGACGTACGGCTCGCTGGAACGCATTAAAATCAT
CACCCTGGCGCCGGAGAAGGTCACCGACCCGGAGGTGATTGGCCAGCTGG
TGGAGCGTGGCATCACCGTGGCCCTGGGCCACTCGATGGCCTCGCTAAGC
GACGGAGAGAGGGCCGTGCAGCAGGGCGCCACGCTGATCACGCATCTGTT
CAACGCCATGCTGCCGTTCCATCACCGCGATCCCGGCCTGGTGGGACTGC
TGGCCTCGGACGCAGTGCCGCACGGTAGGACCGTGTACTTCGGCATCATC
TCGGACGGAGTGCACACTCATCCGGCGGCACTGAGGATCGCCTACCGCAC
GCATCCGCAGGGCCTGATCCTGGTGACGGACGCCATATCGGCGCTGGGCC
TCGAGGAGGGTGTCCACCACATCGGACAGCTGCCGCTGCAGGTTAAGCAG
GGCAAGGCGTTCATCGCAGGCACAGAGACGCTGTGCGGCAGCATCGCCCC
GATGGACGAGTGCGTGCGGATCTTCCAGAAGGCGACCGACTGCTCCGTGG
TCTATGCCATCGAGGCGGCCACCTTGCATCCAGCACAGTGCCTGAAGATC
GAAAAGCAGAAGGGCACCCTGGACTTTGGCTCGGACGCGGACTTCGTTCT
CCTGGACGACCAGCTCCGGGTGCTATCCACCTGGATCGCTGGCGTATGTG
TTCATAGGACTGTCAAGGCAAGCTTTCTAGACCAT

BO13948.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17065-RD 1254 CG17065-PD 1..1251 17..1267 6255 100 Plus
CG17065-RA 1254 CG17065-PA 1..1251 17..1267 6255 100 Plus
CG17065-RB 1296 CG17065-PB 571..1293 545..1267 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17065-RD 1624 CG17065-RD 163..1413 17..1267 6255 100 Plus
CG17065-RA 1556 CG17065-RA 95..1345 17..1267 6255 100 Plus
CG17065-RB 1598 CG17065-RB 665..1387 545..1267 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20255132..20255675 1088..545 2720 100 Minus
X 23542271 X 20255763..20256033 548..278 1355 100 Minus
X 23542271 X 20256773..20257037 281..17 1325 100 Minus
X 23542271 X 20254903..20255082 1267..1088 900 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:55:20 has no hits.

BO13948.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:19 Download gff for BO13948.complete
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 90..1349 9..1273 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:37 Download gff for BO13948.complete
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 95..1345 17..1269 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:33 Download gff for BO13948.complete
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 95..1345 17..1269 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:07 Download gff for BO13948.complete
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 95..1345 17..1269 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:07 Download gff for BO13948.complete
Subject Subject Range Query Range Percent Splice Strand
X 20254899..20255081 1089..1269 98 <- Minus
X 20255132..20255672 548..1088 100 <- Minus
X 20255764..20256032 279..547 100 <- Minus
X 20256776..20257037 17..278 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:37 Download gff for BO13948.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20125925..20126107 1089..1269 98 <- Minus
arm_X 20126158..20126698 548..1088 100 <- Minus
arm_X 20126790..20127058 279..547 100 <- Minus
arm_X 20127802..20128063 17..278 100   Minus

BO13948.pep Sequence

Translation from 16 to 1285

> BO13948.pep
MDVRIKCNSEEPESPEQKILASSQRLLQFTNCRLVRDHRIIHDDLWVRDG
RIVNPEPVFFDERTKAHCRIDCGGAIIAPGYIDLQINGGYGVDFSYDTET
IEEGVATVARGLVKSGVTSFCPTLVTSPSDSYHTILPRIPAEVPKGAGIL
GIHAEGPFINPQKKGAHPEHCIQTIDKGLSTLKETYGSLERIKIITLAPE
KVTDPEVIGQLVERGITVALGHSMASLSDGERAVQQGATLITHLFNAMLP
FHHRDPGLVGLLASDAVPHGRTVYFGIISDGVHTHPAALRIAYRTHPQGL
ILVTDAISALGLEEGVHHIGQLPLQVKQGKAFIAGTETLCGSIAPMDECV
RIFQKATDCSVVYAIEAATLHPAQCLKIEKQKGTLDFGSDADFVLLDDQL
RVLSTWIAGVCVHRTVKASFLDH

BO13948.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17065-PD 417 CG17065-PD 1..417 1..417 2180 100 Plus
CG17065-PA 417 CG17065-PA 1..417 1..417 2180 100 Plus
CG17065-PB 431 CG17065-PB 1..431 1..417 2155 96.8 Plus