Clone Sequence Records
BO13948.3prime Sequence
747 bp (716 high quality bases) assembled on 2006-05-08
> BO13948.3prime
ATGGTCTAGAAAGCTTGCCTTGACAGTCCTATGAACACATACGCCAGCGA
TCCAGGTGGATAGCACCCGGAGCTGGTCGTCCAGGAGAACGAAGTCCGCG
TCCGAGCCAAAGTCCAGGGTGCCCTTCTGCTTTTCGATCTTCAGGCACTG
TGCTGGATGCAAGGTGGCCGCCTCGATGGCATAGACCACGGAGCAGTCGG
TCGCCTTCTGGAAGATCCGCACGCACTCGTCCATCGGGGCGATGCTGCCG
CACAGCGTCTCTGTGCCTGCGATGAACGCCTTGCCCTGCTTAACCTGCAG
CGGCAGCTGTCCGATGTGGTGGACACCCTCCTCGAGGCCCAGCGCCGATA
TGGCGTCCGTCACCAGGATCAGGCCCTGCGGATGCGTGCGGTAGGCGATC
CTCAGTGCCGCCGGATGAGTGTGCACTCCGTCCGAGATGATGCCGAAGTA
CACGGTCCTACCGTGCGGCACTGCGTCCGAGGCCAGCAGTCCCACCAGGC
CGGGATCGCGGTGATGGAACGGCAGCATGGCGTTGAACAGATGCGTGATC
AGCGTGGCGCCCTGCTGCACGGCCCTCTCTCCGTCGCTTAGCGAGGCCAT
CGAGTGGCCCAGGGCCACGGTGATGCCACGCTCCACCAGCTGGCCAATCA
CCTCCGGGTCGGTGACCTTCTCCGGCGCCAGGGTGATGATTTTAATGCGT
TCCAGCGAGCCGTACGTCTCCTTCAGCGTGCTGAGTCCCTTATCAAT
BO13948.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17065-PA | 1254 | CG17065-RA | 523..1251 | 747..19 | 3645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17065-RD | 1624 | CG17065-RD | 685..1413 | 747..19 | 3645 | 100 | Minus |
CG17065-RA | 1556 | CG17065-RA | 617..1345 | 747..19 | 3645 | 100 | Minus |
CG17065-RB | 1598 | CG17065-RB | 665..1387 | 741..19 | 3615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20255132..20255675 | 198..741 | 2720 | 100 | Plus |
X | 23542271 | X | 20254903..20255082 | 19..198 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:30:55 has no hits.
BO13948.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:52 Download gff for
BO13948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-PA | 523..1254 | 18..747 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:51 Download gff for
BO13948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-PA | 523..1254 | 18..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:00:25 Download gff for
BO13948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-RA | 617..1349 | 13..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:07 Download gff for
BO13948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-RA | 617..1349 | 13..747 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:07 Download gff for
BO13948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20254899..20255081 | 13..197 | 98 | <- | Plus |
X | 20255132..20255678 | 198..747 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:00:25 Download gff for
BO13948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20125925..20126107 | 13..197 | 98 | <- | Plus |
arm_X | 20126158..20126704 | 198..747 | 99 | | Plus |
BO13948.5prime Sequence
553 bp (545 high quality bases) assembled on 2006-05-08
> BO13948.5prime
GAAGTTATCAGTCGACATGGACGTTCGGATTAAGTGCAACAGCGAGGAGC
CAGAGTCTCCGGAGCAGAAGATCCTGGCGAGCAGCCAGCGCCTGCTGCAG
TTCACCAACTGCCGCCTTGTACGCGACCACCGGATCATCCACGACGATCT
GTGGGTTCGCGACGGTCGGATCGTGAACCCAGAGCCTGTGTTCTTCGACG
AGCGGACCAAGGCCCACTGTCGCATCGACTGCGGGGGCGCCATCATCGCG
CCCGGCTACATCGACCTCCAGATCAATGGTGGCTATGGCGTGGACTTCTC
GTACGACACGGAGACCATCGAGGAGGGCGTGGCCACGGTGGCACGCGGCC
TGGTCAAGAGCGGAGTCACCTCCTTCTGTCCCACGCTGGTGACCTCGCCC
AGCGACAGCTACCACACCATCCTGCCGCGCATTCCCGCAGAGGTTCCCAA
GGGCGCCGGCATACTGGGCATCCATGGCGGAGGGTCCGTTTATCAATCCG
CAGAAAAAGGGCGCGCATCCGGAGCACTGCATCCAGACCATTGATAAAGG
ACT
BO13948.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17065-PA | 1254 | CG17065-RA | 1..460 | 17..476 | 2300 | 100 | Plus |
CG17065-PA | 1254 | CG17065-RA | 460..536 | 477..553 | 360 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:06:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17065-RD | 1624 | CG17065-RD | 163..698 | 17..553 | 2645 | 99.6 | Plus |
CG17065-RA | 1556 | CG17065-RA | 95..630 | 17..553 | 2645 | 99.6 | Plus |
CG17065-RB | 1598 | CG17065-RB | 95..624 | 17..547 | 2630 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:06:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20256773..20257037 | 281..17 | 1325 | 100 | Minus |
X | 23542271 | X | 20255765..20256033 | 547..278 | 1300 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:06:51 has no hits.
BO13948.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:15:53 Download gff for
BO13948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-PA | 1..536 | 17..553 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:06:52 Download gff for
BO13948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-PA | 1..536 | 17..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:52:54 Download gff for
BO13948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-RA | 90..630 | 9..553 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:12:08 Download gff for
BO13948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-RA | 90..630 | 9..553 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:12:08 Download gff for
BO13948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20255762..20256032 | 279..553 | 98 | <- | Minus |
X | 20256776..20257042 | 9..278 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:52:54 Download gff for
BO13948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20126788..20127058 | 279..553 | 98 | <- | Minus |
arm_X | 20127802..20128068 | 9..278 | 98 | | Minus |
BO13948.complete Sequence
1285 bp assembled on 2008-11-10
GenBank Submission: KX797237
> BO13948.complete
GAAGTTATCAGTCGACATGGACGTTCGGATTAAGTGCAACAGCGAGGAGC
CAGAGTCTCCGGAGCAGAAGATCCTGGCGAGCAGCCAGCGCCTGCTGCAG
TTCACCAACTGCCGCCTTGTACGCGACCACCGGATCATCCACGACGATCT
GTGGGTTCGCGACGGTCGGATCGTGAACCCAGAGCCTGTGTTCTTCGACG
AGCGGACCAAGGCCCACTGTCGCATCGACTGCGGGGGCGCCATCATCGCG
CCCGGCTACATCGACCTCCAGATCAATGGTGGCTATGGCGTGGACTTCTC
GTACGACACGGAGACCATCGAGGAGGGCGTGGCCACGGTGGCACGCGGCC
TGGTCAAGAGCGGAGTCACCTCCTTCTGTCCCACGCTGGTGACCTCGCCC
AGCGACAGCTACCACACCATCCTGCCGCGCATTCCCGCAGAGGTTCCCAA
GGGCGCCGGCATACTGGGCATCCATGCGGAGGGTCCGTTTATCAATCCGC
AGAAAAAGGGCGCGCATCCGGAGCACTGCATCCAGACCATTGATAAGGGA
CTCAGCACGCTGAAGGAGACGTACGGCTCGCTGGAACGCATTAAAATCAT
CACCCTGGCGCCGGAGAAGGTCACCGACCCGGAGGTGATTGGCCAGCTGG
TGGAGCGTGGCATCACCGTGGCCCTGGGCCACTCGATGGCCTCGCTAAGC
GACGGAGAGAGGGCCGTGCAGCAGGGCGCCACGCTGATCACGCATCTGTT
CAACGCCATGCTGCCGTTCCATCACCGCGATCCCGGCCTGGTGGGACTGC
TGGCCTCGGACGCAGTGCCGCACGGTAGGACCGTGTACTTCGGCATCATC
TCGGACGGAGTGCACACTCATCCGGCGGCACTGAGGATCGCCTACCGCAC
GCATCCGCAGGGCCTGATCCTGGTGACGGACGCCATATCGGCGCTGGGCC
TCGAGGAGGGTGTCCACCACATCGGACAGCTGCCGCTGCAGGTTAAGCAG
GGCAAGGCGTTCATCGCAGGCACAGAGACGCTGTGCGGCAGCATCGCCCC
GATGGACGAGTGCGTGCGGATCTTCCAGAAGGCGACCGACTGCTCCGTGG
TCTATGCCATCGAGGCGGCCACCTTGCATCCAGCACAGTGCCTGAAGATC
GAAAAGCAGAAGGGCACCCTGGACTTTGGCTCGGACGCGGACTTCGTTCT
CCTGGACGACCAGCTCCGGGTGCTATCCACCTGGATCGCTGGCGTATGTG
TTCATAGGACTGTCAAGGCAAGCTTTCTAGACCAT
BO13948.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17065-RD | 1254 | CG17065-PD | 1..1251 | 17..1267 | 6255 | 100 | Plus |
CG17065-RA | 1254 | CG17065-PA | 1..1251 | 17..1267 | 6255 | 100 | Plus |
CG17065-RB | 1296 | CG17065-PB | 571..1293 | 545..1267 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17065-RD | 1624 | CG17065-RD | 163..1413 | 17..1267 | 6255 | 100 | Plus |
CG17065-RA | 1556 | CG17065-RA | 95..1345 | 17..1267 | 6255 | 100 | Plus |
CG17065-RB | 1598 | CG17065-RB | 665..1387 | 545..1267 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20255132..20255675 | 1088..545 | 2720 | 100 | Minus |
X | 23542271 | X | 20255763..20256033 | 548..278 | 1355 | 100 | Minus |
X | 23542271 | X | 20256773..20257037 | 281..17 | 1325 | 100 | Minus |
X | 23542271 | X | 20254903..20255082 | 1267..1088 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:55:20 has no hits.
BO13948.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:19 Download gff for
BO13948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-RA | 90..1349 | 9..1273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:37 Download gff for
BO13948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-RA | 95..1345 | 17..1269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:33 Download gff for
BO13948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-RA | 95..1345 | 17..1269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:07 Download gff for
BO13948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-RA | 95..1345 | 17..1269 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:07 Download gff for
BO13948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20254899..20255081 | 1089..1269 | 98 | <- | Minus |
X | 20255132..20255672 | 548..1088 | 100 | <- | Minus |
X | 20255764..20256032 | 279..547 | 100 | <- | Minus |
X | 20256776..20257037 | 17..278 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:37 Download gff for
BO13948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20125925..20126107 | 1089..1269 | 98 | <- | Minus |
arm_X | 20126158..20126698 | 548..1088 | 100 | <- | Minus |
arm_X | 20126790..20127058 | 279..547 | 100 | <- | Minus |
arm_X | 20127802..20128063 | 17..278 | 100 | | Minus |
BO13948.pep Sequence
Translation from 16 to 1285
> BO13948.pep
MDVRIKCNSEEPESPEQKILASSQRLLQFTNCRLVRDHRIIHDDLWVRDG
RIVNPEPVFFDERTKAHCRIDCGGAIIAPGYIDLQINGGYGVDFSYDTET
IEEGVATVARGLVKSGVTSFCPTLVTSPSDSYHTILPRIPAEVPKGAGIL
GIHAEGPFINPQKKGAHPEHCIQTIDKGLSTLKETYGSLERIKIITLAPE
KVTDPEVIGQLVERGITVALGHSMASLSDGERAVQQGATLITHLFNAMLP
FHHRDPGLVGLLASDAVPHGRTVYFGIISDGVHTHPAALRIAYRTHPQGL
ILVTDAISALGLEEGVHHIGQLPLQVKQGKAFIAGTETLCGSIAPMDECV
RIFQKATDCSVVYAIEAATLHPAQCLKIEKQKGTLDFGSDADFVLLDDQL
RVLSTWIAGVCVHRTVKASFLDH
BO13948.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17065-PD | 417 | CG17065-PD | 1..417 | 1..417 | 2180 | 100 | Plus |
CG17065-PA | 417 | CG17065-PA | 1..417 | 1..417 | 2180 | 100 | Plus |
CG17065-PB | 431 | CG17065-PB | 1..431 | 1..417 | 2155 | 96.8 | Plus |