Clone Sequence Records
BO13957.3prime Sequence
808 bp (683 high quality bases) assembled on 2006-05-08
> BO13957.3prime
ATGGTCTAGAAAGCTTGCCTTCCAGTAAAACAGGTGGGAGCTGCGCACAT
CGAAGTGGTAGAAGCGAAGCAGCATGTAATCCTGCCACTTGGTGGGCAAC
AGTCTGAGCAGCCATACACTGAGTGCGAATATTTTTGGCACATACACCAT
GCGCTCGTTCAGCAACACGCCCTTGACAATCTTCTCGGCCACATATGGTG
TGGGCAGTCCGGGATAGCTCTTGGCAATGCCCGCATCACTGAGCAGTGGA
AGATCTCCGCTGGTCCTCATCAGATAGGCATTGGCCACCGTGGTGCGAAC
GTAGTCACAGTCGGACAATCGCAGCTCAGCTCGCAGCGATTCCATGAAGC
CCTCGATTCCGTATTTGGTGGCCGTGTAGATGCCCGCTCCTGGCAGTGGA
ACTAGACCCGCTAAGGCATTTACTGCCACCAGATGACCGGACTTGCGGTT
TATCATCTTCGGCAGGAACTCCTTGGTGGTCATTATGTAGGAGCCCAGAT
TGAGCTGCAGTATTGTGTCGATTTCATCGCTCTTCAGACTGGGTGTTGAA
GTCATGGGCATGAGGGAGGCATTGTTGACCAGAATGTCCACGGGACCCAG
TTCCTTCTCCACCTTGGCGGCCATCAGTTGAAGCTCGCGAGGCGATGACA
CGTCGTTCTTGTAGGCCTTGGCAACGCAGCGTGGAATCTTGGAGAGCAGC
TCCACCGTTTCGTAACATCCCTTGGAGTTGACATCAACGACGGCCAGCTT
GCAGCCCCGCCGCGCCAGTTCCAAGCAGATCTCGCGACCCAGCCCACTGC
CTCCGCCG
BO13957.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17121-PA | 1086 | CG17121-RA | 294..1083 | 808..19 | 3950 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17121-RA | 1433 | CG17121-RA | 488..1277 | 808..19 | 3950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23045157..23045335 | 230..408 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 23045527..23045705 | 481..659 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 23045762..23045912 | 658..808 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 23044973..23045099 | 104..230 | 635 | 100 | Plus |
| 3R | 32079331 | 3R | 23044820..23044906 | 19..105 | 435 | 100 | Plus |
| 3R | 32079331 | 3R | 23045399..23045474 | 406..481 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:03:56 has no hits.
BO13957.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:03 Download gff for
BO13957.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-PA | 294..1086 | 18..808 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:08 Download gff for
BO13957.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-PA | 294..1086 | 18..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:27:15 Download gff for
BO13957.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-RA | 488..1277 | 19..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:42:44 Download gff for
BO13957.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-RA | 488..1277 | 19..808 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:42:44 Download gff for
BO13957.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23044973..23045098 | 104..229 | 100 | <- | Plus |
| 3R | 23044820..23044904 | 19..103 | 100 | <- | Plus |
| 3R | 23045157..23045334 | 230..407 | 100 | <- | Plus |
| 3R | 23045401..23045473 | 408..480 | 100 | <- | Plus |
| 3R | 23045527..23045703 | 481..657 | 100 | <- | Plus |
| 3R | 23045762..23045912 | 658..808 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:27:15 Download gff for
BO13957.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18870695..18870820 | 104..229 | 100 | <- | Plus |
| arm_3R | 18870542..18870626 | 19..103 | 100 | <- | Plus |
| arm_3R | 18870879..18871056 | 230..407 | 100 | <- | Plus |
| arm_3R | 18871123..18871195 | 408..480 | 100 | <- | Plus |
| arm_3R | 18871249..18871425 | 481..657 | 100 | <- | Plus |
| arm_3R | 18871484..18871634 | 658..808 | 100 | | Plus |
BO13957.5prime Sequence
808 bp (700 high quality bases) assembled on 2006-05-08
> BO13957.5prime
GAAGTTATCAGTCGACATGGTGGAGACGGCAACGACAACGACCATAACCC
GCACCACCACCGCCGTTCCGGCTGGTGCAGTAACGGTAACAGGACCCACT
GCCTCGGCCACGCCCACCGCGACACAGGCGGCCGCGCAGGCGCATCGCAA
CGATGAGACCACCCGGGCCATCTTCAATCTGAAAGTCATCGTCTTTCTGC
TCCTCCTGCCTCTGGTCCTGCTGGCCGTCTTTCTCAAGCACCTGTTGGAT
TACCTATTCGCGCTGGGACTCAAGGAGAAGGATGTCAGTGGCAAGGTGGC
ACTGGTGACCGGCGGAGGCAGTGGGCTGGGTCGCGAGATCTGCTTGGAAC
TGGCGCGGCGGGGCTGCAAGCTGGCCGTCGTTGATGTCAACTCCAAGGGA
TGTTACGAAACGGTGGAGCTGCTCTCCAAGATTCCACGCTGCGTTGCCAA
GGCCTACAAGAACGACGTGTCATCGCCTCGCGAGCTTCAACTGATGGCCG
CCAAGGTGGAGAAGGAACTGGGTCCCGTGGACATTCTGGTCAACAATGCC
TCCCTCATGCCCATGACTTCAACACCCAGTCTGAAGAGCGATGAAATCGA
CACAATACTGCAGCTCAATCTGGGCTCCTACATAATGACCACCAAGGAGT
TCCTGCCGAAAATGATAAACCGCAAGTCCGGTCATCTGGTGGCAGTAAAT
GCCTTAACGGGTCTAGTTCCACTGCCAGGAGCGGGCATCTACACGGCCAC
CAAATACGGAATCGAGGGCTTCATGGAATCGCTGCGAGCTGAGCTGCGAT
TGTCCCAC
BO13957.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17121-PA | 1086 | CG17121-RA | 1..789 | 17..805 | 3895 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17121-RA | 1433 | CG17121-RA | 195..983 | 17..805 | 3915 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:43:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23047729..23048020 | 308..17 | 1460 | 100 | Minus |
| 3R | 32079331 | 3R | 23045527..23045705 | 637..459 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 23045762..23045918 | 460..304 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 23045240..23045335 | 805..710 | 480 | 100 | Minus |
| 3R | 32079331 | 3R | 23045399..23045474 | 712..637 | 350 | 97.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:43:58 has no hits.
BO13957.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:04 Download gff for
BO13957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-PA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:09 Download gff for
BO13957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-PA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:18:06 Download gff for
BO13957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-RA | 191..986 | 10..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:36 Download gff for
BO13957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-RA | 191..986 | 10..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:36 Download gff for
BO13957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23045527..23045703 | 461..637 | 100 | <- | Minus |
| 3R | 23045762..23045917 | 305..460 | 100 | <- | Minus |
| 3R | 23047733..23048024 | 10..304 | 98 | | Minus |
| 3R | 23045237..23045334 | 711..808 | 98 | <- | Minus |
| 3R | 23045401..23045473 | 638..710 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:18:06 Download gff for
BO13957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18870959..18871056 | 711..808 | 98 | <- | Minus |
| arm_3R | 18871123..18871195 | 638..710 | 97 | <- | Minus |
| arm_3R | 18871249..18871425 | 461..637 | 100 | <- | Minus |
| arm_3R | 18871484..18871639 | 305..460 | 100 | <- | Minus |
| arm_3R | 18873455..18873746 | 10..304 | 98 | | Minus |
BO13957.complete Sequence
1117 bp assembled on 2006-10-11
GenBank Submission: FJ632982
> BO13957.complete
GAAGTTATCAGTCGACATGGTGGAGACGGCAACGACAACGACCATAACCC
GCACCACCACCGCCGTTCCGGCTGGTGCAGTAACGGTAACAGGACCCACT
GCCTCGGCCACGCCCACCGCGACACAGGCGGCCGCGCAGGCGCATCGCAA
CGATGAGACCACCCGGGCCATCTTCAATCTGAAAGTCATCGTCTTTCTGC
TCCTCCTGCCTCTGGTCCTGCTGGCCGTCTTTCTCAAGCACCTGTTGGAT
TACCTATTCGCGCTGGGACTCAAGGAGAAGGATGTCAGTGGCAAGGTGGC
ACTGGTGACCGGCGGAGGCAGTGGGCTGGGTCGCGAGATCTGCTTGGAAC
TGGCGCGGCGGGGCTGCAAGCTGGCCGTCGTTGATGTCAACTCCAAGGGA
TGTTACGAAACGGTGGAGCTGCTCTCCAAGATTCCACGCTGCGTTGCCAA
GGCCTACAAGAACGACGTGTCATCGCCTCGCGAGCTTCAACTGATGGCCG
CCAAGGTGGAGAAGGAACTGGGTCCCGTGGACATTCTGGTCAACAATGCC
TCCCTCATGCCCATGACTTCAACACCCAGTCTGAAGAGCGATGAAATCGA
CACAATACTGCAGCTCAATCTGGGCTCCTACATAATGACCACCAAGGAGT
TCCTGCCGAAGATGATAAACCGCAAGTCCGGTCATCTGGTGGCAGTAAAT
GCCTTAGCGGGTCTAGTTCCACTGCCAGGAGCGGGCATCTACACGGCCAC
CAAATACGGAATCGAGGGCTTCATGGAATCGCTGCGAGCTGAGCTGCGAT
TGTCCGACTGTGACTACGTTCGCACCACGGTGGCCAATGCCTATCTGATG
AGGACCAGCGGAGATCTTCCACTGCTCAGTGATGCGGGCATTGCCAAGAG
CTATCCCGGACTGCCCACACCATATGTGGCCGAGAAGATTGTCAAGGGCG
TGTTGCTGAACGAGCGCATGGTGTATGTGCCAAAAATATTCGCACTCAGT
GTATGGCTGCTCAGACTGTTGCCCACCAAGTGGCAGGATTACATGCTGCT
TCGCTTCTACCACTTCGATGTGCGCAGCTCCCACCTGTTTTACTGGAAGG
CAAGCTTTCTAGACCAT
BO13957.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17121-RA | 1086 | CG17121-PA | 1..1083 | 17..1099 | 5415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17121-RA | 1433 | CG17121-RA | 195..1277 | 17..1099 | 5415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23047729..23048020 | 308..17 | 1460 | 100 | Minus |
| 3R | 32079331 | 3R | 23045157..23045335 | 888..710 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 23045527..23045705 | 637..459 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 23045762..23045918 | 460..304 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 23044973..23045099 | 1014..888 | 635 | 100 | Minus |
| 3R | 32079331 | 3R | 23044820..23044906 | 1099..1013 | 435 | 100 | Minus |
| 3R | 32079331 | 3R | 23045399..23045474 | 712..637 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:28:16 has no hits.
BO13957.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:27 Download gff for
BO13957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-RA | 1..1086 | 17..1100 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:19 Download gff for
BO13957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-RA | 165..1251 | 10..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:50 Download gff for
BO13957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-RA | 195..1277 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:27 Download gff for
BO13957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-RA | 165..1251 | 10..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:02 Download gff for
BO13957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-RA | 195..1277 | 17..1101 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:02 Download gff for
BO13957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23044818..23044904 | 1015..1101 | 97 | <- | Minus |
| 3R | 23044973..23045098 | 889..1014 | 100 | <- | Minus |
| 3R | 23045157..23045334 | 711..888 | 100 | <- | Minus |
| 3R | 23045401..23045473 | 638..710 | 100 | <- | Minus |
| 3R | 23045527..23045703 | 461..637 | 100 | <- | Minus |
| 3R | 23045762..23045917 | 305..460 | 100 | <- | Minus |
| 3R | 23047733..23048020 | 17..304 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:50 Download gff for
BO13957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18870540..18870626 | 1015..1101 | 97 | <- | Minus |
| arm_3R | 18870695..18870820 | 889..1014 | 100 | <- | Minus |
| arm_3R | 18870879..18871056 | 711..888 | 100 | <- | Minus |
| arm_3R | 18871123..18871195 | 638..710 | 100 | <- | Minus |
| arm_3R | 18871249..18871425 | 461..637 | 100 | <- | Minus |
| arm_3R | 18871484..18871639 | 305..460 | 100 | <- | Minus |
| arm_3R | 18873455..18873742 | 17..304 | 100 | | Minus |
BO13957.pep Sequence
Translation from 16 to 1117
> BO13957.pep
MVETATTTTITRTTTAVPAGAVTVTGPTASATPTATQAAAQAHRNDETTR
AIFNLKVIVFLLLLPLVLLAVFLKHLLDYLFALGLKEKDVSGKVALVTGG
GSGLGREICLELARRGCKLAVVDVNSKGCYETVELLSKIPRCVAKAYKND
VSSPRELQLMAAKVEKELGPVDILVNNASLMPMTSTPSLKSDEIDTILQL
NLGSYIMTTKEFLPKMINRKSGHLVAVNALAGLVPLPGAGIYTATKYGIE
GFMESLRAELRLSDCDYVRTTVANAYLMRTSGDLPLLSDAGIAKSYPGLP
TPYVAEKIVKGVLLNERMVYVPKIFALSVWLLRLLPTKWQDYMLLRFYHF
DVRSSHLFYWKASFLDH
BO13957.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17121-PA | 361 | CG17121-PA | 1..361 | 1..361 | 1825 | 100 | Plus |
| CG13833-PA | 321 | CG13833-PA | 9..308 | 52..347 | 455 | 35.9 | Plus |
| CG15629-PA | 325 | CG15629-PA | 11..297 | 46..338 | 374 | 33.9 | Plus |
| CG14946-PE | 318 | CG14946-PE | 23..298 | 57..336 | 339 | 31.7 | Plus |
| CG14946-PC | 318 | CG14946-PC | 23..298 | 57..336 | 339 | 31.7 | Plus |
