Clone Sequence Records
BO13960.3prime Sequence
569 bp (568 high quality bases) assembled on 2006-05-08
> BO13960.3prime
ATGGTCTAGAAAGCTTGCGATGTGGGTGCCTGTGGCCCAGCCGTGCAGGT
AGATGGTGGTGAAGTTCAGCAGTGGCTCGCCCTGGTGCACATCCGCGCGA
TTCTGGAGGTGATCGAACCAGCGGGAGAGATTCAAATATACCTCCTTGTC
CACCGGCGAAAGGGATTTCACAAGATCGTAGATGGCATAGTAGACGGCCA
GGTCGGCTAGAGTGATGAAGTGGCCCACCAGGTAGGATTTGCTGGCAAAC
AGTTTGTTGAAGTCCGCCAGAAGCTGCTTGGACACGTACTTGTCCTTGGA
GCCGGGCGCCACGTAGAGCACGGAGAACTCGATCCACTGGTACACCTGGG
CTTCCACCTCCCGCGACGCCCTGCTGTTCTGGGCGGTCTCCGACTTGGAC
TCGCTGGCCAGGCTCTCCAGGATCGAGGCGAATCCGGCCACGCTCTTCTT
TTGCCCACTCGTGCGCGTTACGACCTGCTCCTCGTTCAGCTGCACCTTGC
CGGGATTAACGCCCAGGCAGTTTGCTATCTTCTGCACTGTTGCAACGTCA
CACATGTCGACTGATAACT
BO13960.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30185-PA | 540 | CG30185-RA | 1..537 | 555..19 | 2685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30185-RA | 739 | CG30185-RA | 75..612 | 556..19 | 2690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23544246..23544553 | 476..169 | 1540 | 100 | Minus |
2R | 25286936 | 2R | 23544624..23544774 | 169..19 | 755 | 100 | Minus |
2R | 25286936 | 2R | 23544098..23544181 | 556..473 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:24:46 has no hits.
BO13960.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:09 Download gff for
BO13960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30185-PA | 1..540 | 15..555 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:16 Download gff for
BO13960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30185-PA | 1..540 | 15..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:58:11 Download gff for
BO13960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30185-RA | 67..617 | 13..564 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:47:50 Download gff for
BO13960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30185-RA | 67..617 | 13..564 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:47:50 Download gff for
BO13960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23544090..23544179 | 475..564 | 95 | -> | Minus |
2R | 23544248..23544553 | 169..474 | 100 | -> | Minus |
2R | 23544625..23544779 | 13..168 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:58:11 Download gff for
BO13960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19431613..19431702 | 475..564 | 95 | -> | Minus |
arm_2R | 19431771..19432076 | 169..474 | 100 | -> | Minus |
arm_2R | 19432148..19432302 | 13..168 | 98 | | Minus |
BO13960.5prime Sequence
569 bp (568 high quality bases) assembled on 2006-05-08
> BO13960.5prime
GAAGTTATCAGTCGACATGTGTGACGTTGCAACAGTGCAGAAGATAGCAA
ACTGCCTGGGCGTTAATCCCGGCAAGGTGCAGCTGAACGAGGAGCAGGTC
GTAACGCGCACGAGTGGGCAAAAGAAGAGCGTGGCCGGATTCGCCTCGAT
CCTGGAGAGCCTGGCCAGCGAGTCCAAGTCGGAGACCGCCCAGAACAGCA
GGGCGTCGCGGGAGGTGGAAGCCCAGGTGTACCAGTGGATCGAGTTCTCC
GTGCTCTACGTGGCGCCCGGCTCCAAGGACAAGTACGTGTCCAAGCAGCT
TCTGGCGGACTTCAACAAACTGTTTGCCAGCAAATCCTACCTGGTGGGCC
ACTTCATCACTCTAGCCGACCTGGCCGTCTACTATGCCATCTACGATCTT
GTGAAATCCCTTTCGCCGGTGGACAAGGAGGTATATTTGAATCTCTCCCG
CTGGTTCGATCACCTCCAGAATCGCGCGGATGTGCACCAGGGCGAGCCAC
TGCTGAACTTCACCACCATCTACCTGCACGGCTGGGCCACAGGCACCCAC
ATCGCAAGCTTTCTAGACC
BO13960.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30185-PA | 540 | CG30185-RA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30185-RA | 739 | CG30185-RA | 75..612 | 16..553 | 2690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23544246..23544553 | 96..403 | 1540 | 100 | Plus |
2R | 25286936 | 2R | 23544624..23544774 | 403..553 | 755 | 100 | Plus |
2R | 25286936 | 2R | 23544098..23544181 | 16..99 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:00:18 has no hits.
BO13960.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:10 Download gff for
BO13960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30185-PA | 1..540 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:17 Download gff for
BO13960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30185-PA | 1..540 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:34:58 Download gff for
BO13960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30185-RA | 67..617 | 8..559 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:01:14 Download gff for
BO13960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30185-RA | 67..617 | 8..559 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:01:14 Download gff for
BO13960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23544090..23544179 | 8..97 | 95 | -> | Plus |
2R | 23544248..23544553 | 98..403 | 100 | -> | Plus |
2R | 23544625..23544779 | 404..559 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:34:58 Download gff for
BO13960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19431613..19431702 | 8..97 | 95 | -> | Plus |
arm_2R | 19431771..19432076 | 98..403 | 100 | -> | Plus |
arm_2R | 19432148..19432302 | 404..559 | 98 | | Plus |
BO13960.complete Sequence
571 bp assembled on 2006-10-11
GenBank Submission: FJ632983
> BO13960.complete
GAAGTTATCAGTCGACATGTGTGACGTTGCAACAGTGCAGAAGATAGCAA
ACTGCCTGGGCGTTAATCCCGGCAAGGTGCAGCTGAACGAGGAGCAGGTC
GTAACGCGCACGAGTGGGCAAAAGAAGAGCGTGGCCGGATTCGCCTCGAT
CCTGGAGAGCCTGGCCAGCGAGTCCAAGTCGGAGACCGCCCAGAACAGCA
GGGCGTCGCGGGAGGTGGAAGCCCAGGTGTACCAGTGGATCGAGTTCTCC
GTGCTCTACGTGGCGCCCGGCTCCAAGGACAAGTACGTGTCCAAGCAGCT
TCTGGCGGACTTCAACAAACTGTTTGCCAGCAAATCCTACCTGGTGGGCC
ACTTCATCACTCTAGCCGACCTGGCCGTCTACTATGCCATCTACGATCTT
GTGAAATCCCTTTCGCCGGTGGACAAGGAGGTATATTTGAATCTCTCCCG
CTGGTTCGATCACCTCCAGAATCGCGCGGATGTGCACCAGGGCGAGCCAC
TGCTGAACTTCACCACCATCTACCTGCACGGCTGGGCCACAGGCACCCAC
ATCGCAAGCTTTCTAGACCAT
BO13960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:19:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30185-RA | 540 | CG30185-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30185-RA | 739 | CG30185-RA | 75..612 | 16..553 | 2690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23544246..23544553 | 96..403 | 1540 | 100 | Plus |
2R | 25286936 | 2R | 23544624..23544774 | 403..553 | 755 | 100 | Plus |
2R | 25286936 | 2R | 23544098..23544181 | 16..99 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:19:32 has no hits.
BO13960.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:28 Download gff for
BO13960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30185-RA | 1..540 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:22 Download gff for
BO13960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30185-RA | 50..600 | 8..559 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:26 Download gff for
BO13960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30185-RA | 76..612 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:29 Download gff for
BO13960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30185-RA | 50..600 | 8..559 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:21 Download gff for
BO13960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30185-RA | 76..612 | 17..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:21 Download gff for
BO13960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23544625..23544774 | 404..555 | 98 | | Plus |
2R | 23544099..23544179 | 17..97 | 100 | -> | Plus |
2R | 23544248..23544553 | 98..403 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:26 Download gff for
BO13960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19431771..19432076 | 98..403 | 100 | -> | Plus |
arm_2R | 19432148..19432297 | 404..555 | 98 | | Plus |
arm_2R | 19431622..19431702 | 17..97 | 100 | -> | Plus |
BO13960.pep Sequence
Translation from 16 to 571
> BO13960.pep
MCDVATVQKIANCLGVNPGKVQLNEEQVVTRTSGQKKSVAGFASILESLA
SESKSETAQNSRASREVEAQVYQWIEFSVLYVAPGSKDKYVSKQLLADFN
KLFASKSYLVGHFITLADLAVYYAIYDLVKSLSPVDKEVYLNLSRWFDHL
QNRADVHQGEPLLNFTTIYLHGWATGTHIASFLDH
BO13960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30185-PA | 179 | CG30185-PA | 1..179 | 1..179 | 917 | 100 | Plus |