Clone BO13960 Report

Search the DGRC for BO13960

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:139
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG30185-RA
Protein status:BO13960.pep: validated full length
Sequenced Size:571

Clone Sequence Records

BO13960.3prime Sequence

569 bp (568 high quality bases) assembled on 2006-05-08

> BO13960.3prime
ATGGTCTAGAAAGCTTGCGATGTGGGTGCCTGTGGCCCAGCCGTGCAGGT
AGATGGTGGTGAAGTTCAGCAGTGGCTCGCCCTGGTGCACATCCGCGCGA
TTCTGGAGGTGATCGAACCAGCGGGAGAGATTCAAATATACCTCCTTGTC
CACCGGCGAAAGGGATTTCACAAGATCGTAGATGGCATAGTAGACGGCCA
GGTCGGCTAGAGTGATGAAGTGGCCCACCAGGTAGGATTTGCTGGCAAAC
AGTTTGTTGAAGTCCGCCAGAAGCTGCTTGGACACGTACTTGTCCTTGGA
GCCGGGCGCCACGTAGAGCACGGAGAACTCGATCCACTGGTACACCTGGG
CTTCCACCTCCCGCGACGCCCTGCTGTTCTGGGCGGTCTCCGACTTGGAC
TCGCTGGCCAGGCTCTCCAGGATCGAGGCGAATCCGGCCACGCTCTTCTT
TTGCCCACTCGTGCGCGTTACGACCTGCTCCTCGTTCAGCTGCACCTTGC
CGGGATTAACGCCCAGGCAGTTTGCTATCTTCTGCACTGTTGCAACGTCA
CACATGTCGACTGATAACT

BO13960.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30185-PA 540 CG30185-RA 1..537 555..19 2685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG30185-RA 739 CG30185-RA 75..612 556..19 2690 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23544246..23544553 476..169 1540 100 Minus
2R 25286936 2R 23544624..23544774 169..19 755 100 Minus
2R 25286936 2R 23544098..23544181 556..473 420 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:24:46 has no hits.

BO13960.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:09 Download gff for BO13960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30185-PA 1..540 15..555 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:16 Download gff for BO13960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30185-PA 1..540 15..555 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:58:11 Download gff for BO13960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30185-RA 67..617 13..564 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:47:50 Download gff for BO13960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30185-RA 67..617 13..564 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:47:50 Download gff for BO13960.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23544090..23544179 475..564 95 -> Minus
2R 23544248..23544553 169..474 100 -> Minus
2R 23544625..23544779 13..168 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:58:11 Download gff for BO13960.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19431613..19431702 475..564 95 -> Minus
arm_2R 19431771..19432076 169..474 100 -> Minus
arm_2R 19432148..19432302 13..168 98   Minus

BO13960.5prime Sequence

569 bp (568 high quality bases) assembled on 2006-05-08

> BO13960.5prime
GAAGTTATCAGTCGACATGTGTGACGTTGCAACAGTGCAGAAGATAGCAA
ACTGCCTGGGCGTTAATCCCGGCAAGGTGCAGCTGAACGAGGAGCAGGTC
GTAACGCGCACGAGTGGGCAAAAGAAGAGCGTGGCCGGATTCGCCTCGAT
CCTGGAGAGCCTGGCCAGCGAGTCCAAGTCGGAGACCGCCCAGAACAGCA
GGGCGTCGCGGGAGGTGGAAGCCCAGGTGTACCAGTGGATCGAGTTCTCC
GTGCTCTACGTGGCGCCCGGCTCCAAGGACAAGTACGTGTCCAAGCAGCT
TCTGGCGGACTTCAACAAACTGTTTGCCAGCAAATCCTACCTGGTGGGCC
ACTTCATCACTCTAGCCGACCTGGCCGTCTACTATGCCATCTACGATCTT
GTGAAATCCCTTTCGCCGGTGGACAAGGAGGTATATTTGAATCTCTCCCG
CTGGTTCGATCACCTCCAGAATCGCGCGGATGTGCACCAGGGCGAGCCAC
TGCTGAACTTCACCACCATCTACCTGCACGGCTGGGCCACAGGCACCCAC
ATCGCAAGCTTTCTAGACC

BO13960.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG30185-PA 540 CG30185-RA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG30185-RA 739 CG30185-RA 75..612 16..553 2690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23544246..23544553 96..403 1540 100 Plus
2R 25286936 2R 23544624..23544774 403..553 755 100 Plus
2R 25286936 2R 23544098..23544181 16..99 420 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:00:18 has no hits.

BO13960.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:10 Download gff for BO13960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30185-PA 1..540 17..557 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:17 Download gff for BO13960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30185-PA 1..540 17..557 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:34:58 Download gff for BO13960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30185-RA 67..617 8..559 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:01:14 Download gff for BO13960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30185-RA 67..617 8..559 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:01:14 Download gff for BO13960.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23544090..23544179 8..97 95 -> Plus
2R 23544248..23544553 98..403 100 -> Plus
2R 23544625..23544779 404..559 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:34:58 Download gff for BO13960.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19431613..19431702 8..97 95 -> Plus
arm_2R 19431771..19432076 98..403 100 -> Plus
arm_2R 19432148..19432302 404..559 98   Plus

BO13960.complete Sequence

571 bp assembled on 2006-10-11

GenBank Submission: FJ632983

> BO13960.complete
GAAGTTATCAGTCGACATGTGTGACGTTGCAACAGTGCAGAAGATAGCAA
ACTGCCTGGGCGTTAATCCCGGCAAGGTGCAGCTGAACGAGGAGCAGGTC
GTAACGCGCACGAGTGGGCAAAAGAAGAGCGTGGCCGGATTCGCCTCGAT
CCTGGAGAGCCTGGCCAGCGAGTCCAAGTCGGAGACCGCCCAGAACAGCA
GGGCGTCGCGGGAGGTGGAAGCCCAGGTGTACCAGTGGATCGAGTTCTCC
GTGCTCTACGTGGCGCCCGGCTCCAAGGACAAGTACGTGTCCAAGCAGCT
TCTGGCGGACTTCAACAAACTGTTTGCCAGCAAATCCTACCTGGTGGGCC
ACTTCATCACTCTAGCCGACCTGGCCGTCTACTATGCCATCTACGATCTT
GTGAAATCCCTTTCGCCGGTGGACAAGGAGGTATATTTGAATCTCTCCCG
CTGGTTCGATCACCTCCAGAATCGCGCGGATGTGCACCAGGGCGAGCCAC
TGCTGAACTTCACCACCATCTACCTGCACGGCTGGGCCACAGGCACCCAC
ATCGCAAGCTTTCTAGACCAT

BO13960.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG30185-RA 540 CG30185-PA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG30185-RA 739 CG30185-RA 75..612 16..553 2690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23544246..23544553 96..403 1540 100 Plus
2R 25286936 2R 23544624..23544774 403..553 755 100 Plus
2R 25286936 2R 23544098..23544181 16..99 420 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:19:32 has no hits.

BO13960.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:28 Download gff for BO13960.complete
Subject Subject Range Query Range Percent Splice Strand
CG30185-RA 1..540 17..557 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:22 Download gff for BO13960.complete
Subject Subject Range Query Range Percent Splice Strand
CG30185-RA 50..600 8..559 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:26 Download gff for BO13960.complete
Subject Subject Range Query Range Percent Splice Strand
CG30185-RA 76..612 17..555 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:29 Download gff for BO13960.complete
Subject Subject Range Query Range Percent Splice Strand
CG30185-RA 50..600 8..559 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:21 Download gff for BO13960.complete
Subject Subject Range Query Range Percent Splice Strand
CG30185-RA 76..612 17..555 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:21 Download gff for BO13960.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23544625..23544774 404..555 98   Plus
2R 23544099..23544179 17..97 100 -> Plus
2R 23544248..23544553 98..403 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:26 Download gff for BO13960.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19431771..19432076 98..403 100 -> Plus
arm_2R 19432148..19432297 404..555 98   Plus
arm_2R 19431622..19431702 17..97 100 -> Plus

BO13960.pep Sequence

Translation from 16 to 571

> BO13960.pep
MCDVATVQKIANCLGVNPGKVQLNEEQVVTRTSGQKKSVAGFASILESLA
SESKSETAQNSRASREVEAQVYQWIEFSVLYVAPGSKDKYVSKQLLADFN
KLFASKSYLVGHFITLADLAVYYAIYDLVKSLSPVDKEVYLNLSRWFDHL
QNRADVHQGEPLLNFTTIYLHGWATGTHIASFLDH

BO13960.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG30185-PA 179 CG30185-PA 1..179 1..179 917 100 Plus