Clone BO13961 Report

Search the DGRC for BO13961

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:139
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptGV1-RB
Protein status:BO13961.pep: Imported from assembly
Sequenced Size:574

Clone Sequence Records

BO13961.5prime Sequence

572 bp (571 high quality bases) assembled on 2006-05-08

> BO13961.5prime
GAAGTTATCAGTCGACATGCTCACTCCTTGCCTGCTGCTAGTCGCCACAG
TCGCCAGTTTCAGCCTCCACGCGCAGGCCATCCGGGTGGACTGGGGCACC
AACACAGGACCCATAGCACCACCTCCGCCGCGCACCACTCCGCAGCCGCC
GAGGAAACCATACCGGGATCCAGCGCCCGTCTGGGAGGACCAGAGCGATG
ACGTACCCAACCCCAATCCCTATGTCTACGTGTTGCCACCGCCTTCGAGA
CCAAGGACCTGGGCGATTCCCGCCGGACCATATGCTCCGCCCAACTACAA
CAACCTGCCGCCCAAGGGCAACAACTACGGCCAGCTGGCCAGCAATTCCT
ACAGCGGAGGAGTGACCTCCGTGCCGGGACTGGCCGCCCAGTATGTGCCC
GGAGTGGGCATCAAGTATACGGCAATTGTGTCTGATAAGCTGCAGGGCAA
ATACAATGCGAAGACCAAGAAGTACAAGGCCTATGAGAAGGCCAAGTACG
CTTACCCCTGGAACTATGTAAGGCAATACGAGAATCGAAAGCGATATCTG
CGCTATGCAAGCTTTCTAAACC

BO13961.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12023-PB 543 GV1-RB 1..540 17..556 2700 100 Plus
CG12023-PA 1065 GV1-RA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
GV1-RB 801 CG12023-RB 186..725 17..556 2700 100 Plus
GV1-RA 1196 CG12023-RA 186..686 17..517 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1821807..1822137 226..556 1655 100 Plus
3L 28110227 3L 1821213..1821426 19..232 1040 99.1 Plus
Blast to na_te.dros performed on 2015-02-11 09:55:00 has no hits.

BO13961.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:11 Download gff for BO13961.5prime
Subject Subject Range Query Range Percent Splice Strand
GV1-PB 1..543 17..559 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:19 Download gff for BO13961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12023-PB 1..543 17..559 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:08:28 Download gff for BO13961.5prime
Subject Subject Range Query Range Percent Splice Strand
GV1-RB 180..729 9..560 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:05 Download gff for BO13961.5prime
Subject Subject Range Query Range Percent Splice Strand
GV1-RB 180..729 9..560 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:05 Download gff for BO13961.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1821209..1821419 12..225 98 -> Plus
3L 1821807..1822141 226..560 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:08:28 Download gff for BO13961.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1821209..1821419 12..225 98 -> Plus
arm_3L 1821807..1822141 226..560 99   Plus

BO13961.complete Sequence

574 bp assembled on 2008-08-15

GenBank Submission: FJ632984

> BO13961.complete
GAAGTTATCAGTCGACATGCTCACTCCTTGCCTGCTGCTAGTCGCCACAG
TCGCCAGTTTCAGCCTCCACGCGCAGGCCATCCGGGTGGACTGGGGCACC
AACACAGGACCCATAGCACCACCTCCGCCGCGCACCACTCCGCAGCCGCC
GAGGAAACCATACCGGGATCCAGCGCCCGTCTGGGAGGACCAGAGCGATG
ACGTACCCAACCCCAATCCCTATGTCTACGTGTTGCCACCGCCTTCGAGA
CCAAGGACCTGGGCGATTCCCGCCGGACCATATGCTCCGCCCAACTACAA
CAACCTGCCGCCCAAGGGCAACAACTACGGCCAGCTGGCCAGCAATTCCT
ACAGCGGAGGAGTGACCTCCGTGCCGGGACTGGCCGCCCAGTATGTGCCC
GGAGTGGGCATCAAGTATACGGCAATTGTGTCTGATAAGCTGCAGGGCAA
ATACAATGCGAAGACCAAGAAGTACAAGGCCTATGAGAAGGCCAAGTACG
CTTACCCCTGGAACTATGTAAGGCAATACGAGAATCGAAAGCGATATCTG
CGCTATGCAAGCTTTCTAGACCAT

BO13961.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
GV1-RB 543 CG12023-PB 1..540 17..556 2700 100 Plus
GV1-RA 882 CG12023-PA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
GV1-RB 801 CG12023-RB 186..725 17..556 2700 100 Plus
GV1-RA 1196 CG12023-RA 186..686 17..517 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1821807..1822137 226..556 1655 100 Plus
3L 28110227 3L 1821213..1821426 19..232 1040 99.1 Plus
Blast to na_te.dros performed on 2014-11-27 15:06:08 has no hits.

BO13961.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:54 Download gff for BO13961.complete
Subject Subject Range Query Range Percent Splice Strand
GV1-RB 179..728 9..560 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:17 Download gff for BO13961.complete
Subject Subject Range Query Range Percent Splice Strand
GV1-RB 186..725 17..558 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:48 Download gff for BO13961.complete
Subject Subject Range Query Range Percent Splice Strand
GV1-RB 185..724 17..558 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:00 Download gff for BO13961.complete
Subject Subject Range Query Range Percent Splice Strand
GV1-RB 186..725 17..558 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:00 Download gff for BO13961.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1821807..1822137 226..558 99   Plus
3L 1821212..1821419 17..225 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:17 Download gff for BO13961.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1821212..1821419 17..225 99 -> Plus
arm_3L 1821807..1822137 226..558 99   Plus

BO13961.pep Sequence

Translation from 16 to 574

> BO13961.pep
MLTPCLLLVATVASFSLHAQAIRVDWGTNTGPIAPPPPRTTPQPPRKPYR
DPAPVWEDQSDDVPNPNPYVYVLPPPSRPRTWAIPAGPYAPPNYNNLPPK
GNNYGQLASNSYSGGVTSVPGLAAQYVPGVGIKYTAIVSDKLQGKYNAKT
KKYKAYEKAKYAYPWNYVRQYENRKRYLRYASFLDH

BO13961.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
GV1-PB 180 CG12023-PB 1..180 1..180 998 100 Plus
GV1-PA 293 CG12023-PA 1..185 1..185 940 91.9 Plus