Clone Sequence Records
BO13961.5prime Sequence
572 bp (571 high quality bases) assembled on 2006-05-08
> BO13961.5prime
GAAGTTATCAGTCGACATGCTCACTCCTTGCCTGCTGCTAGTCGCCACAG
TCGCCAGTTTCAGCCTCCACGCGCAGGCCATCCGGGTGGACTGGGGCACC
AACACAGGACCCATAGCACCACCTCCGCCGCGCACCACTCCGCAGCCGCC
GAGGAAACCATACCGGGATCCAGCGCCCGTCTGGGAGGACCAGAGCGATG
ACGTACCCAACCCCAATCCCTATGTCTACGTGTTGCCACCGCCTTCGAGA
CCAAGGACCTGGGCGATTCCCGCCGGACCATATGCTCCGCCCAACTACAA
CAACCTGCCGCCCAAGGGCAACAACTACGGCCAGCTGGCCAGCAATTCCT
ACAGCGGAGGAGTGACCTCCGTGCCGGGACTGGCCGCCCAGTATGTGCCC
GGAGTGGGCATCAAGTATACGGCAATTGTGTCTGATAAGCTGCAGGGCAA
ATACAATGCGAAGACCAAGAAGTACAAGGCCTATGAGAAGGCCAAGTACG
CTTACCCCTGGAACTATGTAAGGCAATACGAGAATCGAAAGCGATATCTG
CGCTATGCAAGCTTTCTAAACC
BO13961.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12023-PB | 543 | GV1-RB | 1..540 | 17..556 | 2700 | 100 | Plus |
CG12023-PA | 1065 | GV1-RA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:55:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GV1-RB | 801 | CG12023-RB | 186..725 | 17..556 | 2700 | 100 | Plus |
GV1-RA | 1196 | CG12023-RA | 186..686 | 17..517 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:54:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1821807..1822137 | 226..556 | 1655 | 100 | Plus |
3L | 28110227 | 3L | 1821213..1821426 | 19..232 | 1040 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:55:00 has no hits.
BO13961.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:11 Download gff for
BO13961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GV1-PB | 1..543 | 17..559 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:19 Download gff for
BO13961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12023-PB | 1..543 | 17..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:08:28 Download gff for
BO13961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GV1-RB | 180..729 | 9..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:05 Download gff for
BO13961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GV1-RB | 180..729 | 9..560 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:05 Download gff for
BO13961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1821209..1821419 | 12..225 | 98 | -> | Plus |
3L | 1821807..1822141 | 226..560 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:08:28 Download gff for
BO13961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1821209..1821419 | 12..225 | 98 | -> | Plus |
arm_3L | 1821807..1822141 | 226..560 | 99 | | Plus |
BO13961.complete Sequence
574 bp assembled on 2008-08-15
GenBank Submission: FJ632984
> BO13961.complete
GAAGTTATCAGTCGACATGCTCACTCCTTGCCTGCTGCTAGTCGCCACAG
TCGCCAGTTTCAGCCTCCACGCGCAGGCCATCCGGGTGGACTGGGGCACC
AACACAGGACCCATAGCACCACCTCCGCCGCGCACCACTCCGCAGCCGCC
GAGGAAACCATACCGGGATCCAGCGCCCGTCTGGGAGGACCAGAGCGATG
ACGTACCCAACCCCAATCCCTATGTCTACGTGTTGCCACCGCCTTCGAGA
CCAAGGACCTGGGCGATTCCCGCCGGACCATATGCTCCGCCCAACTACAA
CAACCTGCCGCCCAAGGGCAACAACTACGGCCAGCTGGCCAGCAATTCCT
ACAGCGGAGGAGTGACCTCCGTGCCGGGACTGGCCGCCCAGTATGTGCCC
GGAGTGGGCATCAAGTATACGGCAATTGTGTCTGATAAGCTGCAGGGCAA
ATACAATGCGAAGACCAAGAAGTACAAGGCCTATGAGAAGGCCAAGTACG
CTTACCCCTGGAACTATGTAAGGCAATACGAGAATCGAAAGCGATATCTG
CGCTATGCAAGCTTTCTAGACCAT
BO13961.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:06:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GV1-RB | 543 | CG12023-PB | 1..540 | 17..556 | 2700 | 100 | Plus |
GV1-RA | 882 | CG12023-PA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GV1-RB | 801 | CG12023-RB | 186..725 | 17..556 | 2700 | 100 | Plus |
GV1-RA | 1196 | CG12023-RA | 186..686 | 17..517 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1821807..1822137 | 226..556 | 1655 | 100 | Plus |
3L | 28110227 | 3L | 1821213..1821426 | 19..232 | 1040 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:06:08 has no hits.
BO13961.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:54 Download gff for
BO13961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GV1-RB | 179..728 | 9..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:17 Download gff for
BO13961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GV1-RB | 186..725 | 17..558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:48 Download gff for
BO13961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GV1-RB | 185..724 | 17..558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:00 Download gff for
BO13961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GV1-RB | 186..725 | 17..558 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:00 Download gff for
BO13961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1821807..1822137 | 226..558 | 99 | | Plus |
3L | 1821212..1821419 | 17..225 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:17 Download gff for
BO13961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1821212..1821419 | 17..225 | 99 | -> | Plus |
arm_3L | 1821807..1822137 | 226..558 | 99 | | Plus |
BO13961.pep Sequence
Translation from 16 to 574
> BO13961.pep
MLTPCLLLVATVASFSLHAQAIRVDWGTNTGPIAPPPPRTTPQPPRKPYR
DPAPVWEDQSDDVPNPNPYVYVLPPPSRPRTWAIPAGPYAPPNYNNLPPK
GNNYGQLASNSYSGGVTSVPGLAAQYVPGVGIKYTAIVSDKLQGKYNAKT
KKYKAYEKAKYAYPWNYVRQYENRKRYLRYASFLDH
BO13961.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GV1-PB | 180 | CG12023-PB | 1..180 | 1..180 | 998 | 100 | Plus |
GV1-PA | 293 | CG12023-PA | 1..185 | 1..185 | 940 | 91.9 | Plus |