Clone BO13967 Report

Search the DGRC for BO13967

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:139
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG6639-RA
Protein status:BO13967.pep: Imported from assembly
Sequenced Size:1516

Clone Sequence Records

BO13967.3prime Sequence

777 bp (679 high quality bases) assembled on 2006-05-08

> BO13967.3prime
ATGGTCTAGAAAGCTTGCCCCACTCCTGTAATCGAAGGGCAGCAGCTTCT
CGGTAATCCAATTTGTAAACTTGGACACCTCCGTATATATGGCCGGAATG
CCCTCCTGCCCGCACCCAACGCCCCAGTTTACTATTCCAGCCTGCTCGTA
CACACCAGAGTTCTCCCCTCCGATTGAACAGAATAGGGCCGATCCTCCAT
CACCGGTGCAGGTATCGCGGCCTAACTCGCCTCCGGCGCAAATGATGTTC
TTGGGCAGCTCAAATTTAGCGCCCAACCTGGTCGACCTCAAGAACTTCTC
GCAAACATTTCGATTTACCACGAGCAACTGAACTTTCTTCAGGACGGTGG
AGTATCGTTGATCCTCGTATCTCATTTTTCCCCAACCGGCCACCGTGCAA
CGACGTCCTGCGAACGATTTATTTGGTGTAGGCAAACAGATAGTTCTGAT
GTGATCATTCAGTTTGAAGGGCGAATTTAGGAAAAGTAACGCCAAGTTGT
TGGCACCTGATTTGAAGTCAAATCCTTCATGGATTACTGCCCTTTCAACT
TCGCGCTGCTCAGACAAAAATATCTCTCGATCGGATTTTAAGTCCCAATC
GCCGGCCCTGACCACAAGTTCGGTTTCGATTGTAATTACCCGGTGAGCTA
CTGTTAGAACGACATTTGGTTGAATCAGGGATCCGCCAGCCAAGTACTGT
CCATTGTGAAAAATAGCAACAGCCCAGGGATATTGAGCTGGTCGTGCTTG
ATCAATGGTTATTCCTTCTACCTTTTG

BO13967.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6639-PA 1485 CG6639-RA 729..1482 772..19 3770 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
SPH93-RA 1587 CG6639-RA 751..1509 777..19 3780 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17454341..17455099 19..777 3780 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 04:16:52 has no hits.

BO13967.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:16 Download gff for BO13967.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6639-PA 724..1485 16..777 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:28 Download gff for BO13967.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6639-PA 724..1485 16..777 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:42:45 Download gff for BO13967.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6639-RA 751..1509 19..777 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:10 Download gff for BO13967.3prime
Subject Subject Range Query Range Percent Splice Strand
SPH93-RA 751..1509 19..777 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:10 Download gff for BO13967.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17454341..17455099 19..777 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:42:45 Download gff for BO13967.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17454341..17455099 19..777 99   Plus

BO13967.5prime Sequence

743 bp (634 high quality bases) assembled on 2006-05-08

> BO13967.5prime
GAAGTTATCAGTCGACATGAAGCATTGTTGGGCAATCGGAACTCTACTCT
TAGCAAGTGTCCTTATGGGCAATGCCTGTCGACATACTTGCGTTACCCGG
AATTTTTGTTTGTATGAGGAACCAACATTTGATTACCGCTCCAGTAATTG
CGGCAATACCAAAATTTGCTGTGCAGTTCTACGAAAGCCTGGAGGTACGG
TTTTAATTGAACCAAATGGCCCCGAAGATGATAAGGTTGGAGTAAACGGA
ATAAATGCACAACTATCGCCTACACGCGAACTCACTAGAGATCGCCCAAA
TACCATTGAGTCACAAGTAAAGGAAATCAACGACTTCAGTGGGCGTCCAA
CCAACAACGAAAGGAATCCAGCAACCGAACCGAACAACGGCGGGTATACA
ACACCCAACGGTGGGTATCCAGTAAACAACGGTGGGTATCCAGTAAACAA
CGGTGGGTATCCATCAAACAACGGTGGGTATCCATCAAACAACGGTGGGT
ATCCAGTAAACAACGGTGGGTATCCAGTAAACAACGGTGGGTATCCAGCA
AACAACGGTGGGTATCCAGCAAACAACGGTGGGTATCCAACAACCAACGT
TGGAAATCCAACAAACAACGGAGGGAACCCGACTACCAATTTTGGAAATC
CACAAACAACGGAGGGAACCCGACTACCAATGTTGGAAGCTCAGAGCTTT
TGTCACCAAGTTGCGGCATGAGCAACGCAAATGGCTTGCAAAT

BO13967.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6639-PA 1485 CG6639-RA 1..636 17..652 3180 100 Plus
CG6639-PA 1485 CG6639-RA 637..728 652..743 460 100 Plus
CG6639-PA 1485 CG6639-RA 626..673 600..647 215 97.9 Plus
CG6639-PA 1485 CG6639-RA 595..631 652..688 160 97.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
SPH93-RA 1587 CG6639-RA 26..755 15..743 3625 99.9 Plus
SPH93-RA 1587 CG6639-RA 457..700 383..647 645 83.4 Plus
SPH93-RA 1587 CG6639-RA 394..658 446..688 620 83 Plus
SPH93-RA 1587 CG6639-RA 478..700 383..605 605 84.8 Plus
SPH93-RA 1587 CG6639-RA 394..616 467..688 595 84.8 Plus
SPH93-RA 1587 CG6639-RA 394..531 488..625 450 88.4 Plus
SPH93-RA 1587 CG6639-RA 499..636 383..520 450 88.4 Plus
SPH93-RA 1587 CG6639-RA 394..510 509..625 360 87.2 Plus
SPH93-RA 1587 CG6639-RA 520..636 383..499 360 87.2 Plus
SPH93-RA 1587 CG6639-RA 394..489 530..625 270 85.4 Plus
SPH93-RA 1587 CG6639-RA 541..636 383..478 270 85.4 Plus
SPH93-RA 1587 CG6639-RA 562..678 383..499 180 76.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17455095..17455655 743..184 2755 99.8 Minus
2L 23513712 2L 17455150..17455414 647..383 875 88.7 Minus
2L 23513712 2L 17455726..17455898 187..15 865 100 Minus
2L 23513712 2L 17455192..17455456 688..425 825 88.3 Minus
2L 23513712 2L 17455177..17455393 599..383 620 85.7 Minus
2L 23513712 2L 17455277..17455456 625..446 615 89.4 Minus
2L 23513712 2L 17455150..17455372 605..383 605 84.8 Minus
2L 23513712 2L 17455234..17455456 688..467 570 84.8 Minus
2L 23513712 2L 17455214..17455351 520..383 450 88.4 Minus
2L 23513712 2L 17455319..17455456 625..488 450 88.4 Minus
2L 23513712 2L 17455214..17455330 499..383 360 87.2 Minus
2L 23513712 2L 17455340..17455456 625..509 360 87.2 Minus
2L 23513712 2L 17455214..17455309 478..383 270 85.4 Minus
2L 23513712 2L 17455361..17455456 625..530 270 85.4 Minus
2L 23513712 2L 17455172..17455288 499..383 180 76.9 Minus
Blast to na_te.dros performed on 2015-02-10 20:29:00 has no hits.

BO13967.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:17 Download gff for BO13967.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6639-PA 1..728 17..743 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:29 Download gff for BO13967.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6639-PA 1..728 17..743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:40:29 Download gff for BO13967.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6639-RA 21..755 10..743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:05 Download gff for BO13967.5prime
Subject Subject Range Query Range Percent Splice Strand
SPH93-RA 21..755 10..743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:05 Download gff for BO13967.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17455095..17455651 188..743 99 <- Minus
2L 17455726..17455903 10..187 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:40:29 Download gff for BO13967.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17455095..17455651 188..743 99 <- Minus
arm_2L 17455726..17455903 10..187 98   Minus

BO13967.complete Sequence

1516 bp assembled on 2009-08-24

GenBank Submission: KX796204

> BO13967.complete
GAAGTTATCAGTCGACATGAAGCATTGTTGGGCAATCGGAACTCTACTCT
TAGCAAGTGTCCTTATGGGCAATGCCTGTCGACATACTTGCGTTACCCGG
AATTTTTGTTTGTATGAGGAACCAACATTTGATTACCGCTCCAGTAATTG
CGGCAATACCAAAATTTGCTGTGCAGTTCTACGAAAGCCTGGAGGTACGG
TTTTAATTGAACCAAATGGCCCCGAAGATGATAAGGTTGGAGTAAACGGA
ATAAATGCACAACTATCGCCTACACGCGAACTCACTAGAGATCGCCCAAA
TACCATTGAGTCACAAGTAAAGGAAATCAACGACTTCAGTGGGCGTCCAA
CCAACAACGAAAGGAATCCAGCAACCGAACCGAACAACGGCGGGTATACA
ACACCCAACGGTGGGTATCCAGTAAACAACGGTGGGTATCCAGTAAACAA
CGGTGGGTATCCATCAAACAACGGTGGGTATCCATCAAACAACGGTGGGT
ATCCAGTAAACAACGGTGGGTATCCAGTAAACAACGGTGGGTATCCAGCA
AACAACGGTGGGTATCCAGCAAACAACGGTGGGTATCCAACAACCAACGT
TGGAAATCCAACAAACAACGGAGGGAACCCGACTACCAATTTTGGAAATC
CAACAAACAACGGAGGGAACCCGACTACCAATGTTGGAAGCTCAGAGCTT
TTGTCACCAAGTTGCGGCATGAGCAACGCAAATGGCTTGCAAATGGTAGA
AGGAATAACCATTGATCAAGCACGACCAGCTCAATATCCCTGGGCTGTTG
CTATTTTTCACAATGGACAGTACTTGGCTGGCGGATCCCTGATTCAACCA
AATGTCGTTCTAACAGTAGCTCACCGGGTAATTACAATCGAAACCGAACT
TGTGGTCAGGGCCGGCGATTGGGACTTAAAATCCGATCGAGAGATATTTT
TGTCTGAGCAGCGCGAAGTTGAAAGGGCAGTAATCCATGAAGGATTTGAC
TTCAAATCAGGTGCCAACAACTTGGCGTTACTTTTCCTAAATTCGCCCTT
CAAACTGAATGATCACATCAGAACTATCTGTTTGCCTACACCAAATAAAT
CGTTCGCAGGACGTCGTTGCACGGTGGCCGGTTGGGGAAAAATGAGATAC
GAGGATCAACGATACTCCACCGTCCTGAAGAAAGTTCAGTTGCTCGTGGT
AAATCGAAATGTTTGCGAGAAGTTCTTGAGGTCGACCAGGTTGGGCGCTA
AATTTGAGCTGCCCAAGAACATCATTTGCGCCGGAGGCGAGTTAGGCCGC
GATACCTGCACCGGTGATGGAGGATCGGCCCTATTCTGTTCAATCGGAGG
GGAGAACTCTGGTGTGTACGAGCAGGCTGGAATAGTAAACTGGGGCGTTG
GGTGCGGGCAGGAGGGCATTCCGGCCATATATACGGAGGTGTCCAAGTTT
ACAAATTGGATTACCGAGAAGCTGCTGCCCTTCGATTACAGGAGTGGGGC
AAGCTTTCTAGACCAT

BO13967.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
SPH93-RA 1485 CG6639-PA 1..1482 17..1498 7410 100 Plus
SPH93-RA 1485 CG6639-PA 367..631 425..689 875 88.7 Plus
SPH93-RA 1485 CG6639-PA 409..673 383..647 875 88.7 Plus
SPH93-RA 1485 CG6639-PA 367..583 446..662 620 85.7 Plus
SPH93-RA 1485 CG6639-PA 430..646 383..599 620 85.7 Plus
SPH93-RA 1485 CG6639-PA 451..673 383..605 605 84.8 Plus
SPH93-RA 1485 CG6639-PA 367..589 467..689 605 84.8 Plus
SPH93-RA 1485 CG6639-PA 367..504 488..625 450 88.4 Plus
SPH93-RA 1485 CG6639-PA 472..609 383..520 450 88.4 Plus
SPH93-RA 1485 CG6639-PA 367..483 509..625 360 87.2 Plus
SPH93-RA 1485 CG6639-PA 493..609 383..499 360 87.2 Plus
SPH93-RA 1485 CG6639-PA 367..462 530..625 270 85.4 Plus
SPH93-RA 1485 CG6639-PA 514..609 383..478 270 85.4 Plus
SPH93-RA 1485 CG6639-PA 367..483 551..667 180 76.9 Plus
SPH93-RA 1485 CG6639-PA 535..651 383..499 180 76.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
SPH93-RA 1587 CG6639-RA 26..1509 15..1498 7420 100 Plus
SPH93-RA 1587 CG6639-RA 394..658 425..689 875 88.7 Plus
SPH93-RA 1587 CG6639-RA 436..700 383..647 875 88.7 Plus
SPH93-RA 1587 CG6639-RA 394..610 446..662 620 85.7 Plus
SPH93-RA 1587 CG6639-RA 457..673 383..599 620 85.7 Plus
SPH93-RA 1587 CG6639-RA 478..700 383..605 605 84.8 Plus
SPH93-RA 1587 CG6639-RA 394..616 467..689 605 84.8 Plus
SPH93-RA 1587 CG6639-RA 394..531 488..625 450 88.4 Plus
SPH93-RA 1587 CG6639-RA 499..636 383..520 450 88.4 Plus
SPH93-RA 1587 CG6639-RA 394..510 509..625 360 87.2 Plus
SPH93-RA 1587 CG6639-RA 520..636 383..499 360 87.2 Plus
SPH93-RA 1587 CG6639-RA 394..489 530..625 270 85.4 Plus
SPH93-RA 1587 CG6639-RA 541..636 383..478 270 85.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17454341..17455655 1498..184 6575 100 Minus
2L 23513712 2L 17455150..17455414 647..383 875 88.7 Minus
2L 23513712 2L 17455192..17455456 689..425 875 88.7 Minus
2L 23513712 2L 17455726..17455898 187..15 865 100 Minus
2L 23513712 2L 17455177..17455393 599..383 620 85.7 Minus
2L 23513712 2L 17455240..17455456 662..446 620 85.7 Minus
2L 23513712 2L 17455150..17455372 605..383 605 84.8 Minus
2L 23513712 2L 17455234..17455456 689..467 605 84.8 Minus
2L 23513712 2L 17455214..17455351 520..383 450 88.4 Minus
2L 23513712 2L 17455319..17455456 625..488 450 88.4 Minus
2L 23513712 2L 17455214..17455330 499..383 360 87.2 Minus
2L 23513712 2L 17455340..17455456 625..509 360 87.2 Minus
2L 23513712 2L 17455214..17455309 478..383 270 85.4 Minus
2L 23513712 2L 17455361..17455456 625..530 270 85.4 Minus
Blast to na_te.dros performed on 2014-11-28 01:33:16 has no hits.

BO13967.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:00 Download gff for BO13967.complete
Subject Subject Range Query Range Percent Splice Strand
CG6639-RA 22..1503 17..1500 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:54 Download gff for BO13967.complete
Subject Subject Range Query Range Percent Splice Strand
CG6639-RA 28..1509 17..1500 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:19 Download gff for BO13967.complete
Subject Subject Range Query Range Percent Splice Strand
SPH93-RA 28..1509 17..1500 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:19 Download gff for BO13967.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17454338..17455651 188..1500 99 <- Minus
2L 17455726..17455896 17..187 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:54 Download gff for BO13967.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17454338..17455651 188..1500 99 <- Minus
arm_2L 17455726..17455896 17..187 100   Minus

BO13967.pep Sequence

Translation from 16 to 1516

> BO13967.pep
MKHCWAIGTLLLASVLMGNACRHTCVTRNFCLYEEPTFDYRSSNCGNTKI
CCAVLRKPGGTVLIEPNGPEDDKVGVNGINAQLSPTRELTRDRPNTIESQ
VKEINDFSGRPTNNERNPATEPNNGGYTTPNGGYPVNNGGYPVNNGGYPS
NNGGYPSNNGGYPVNNGGYPVNNGGYPANNGGYPANNGGYPTTNVGNPTN
NGGNPTTNFGNPTNNGGNPTTNVGSSELLSPSCGMSNANGLQMVEGITID
QARPAQYPWAVAIFHNGQYLAGGSLIQPNVVLTVAHRVITIETELVVRAG
DWDLKSDREIFLSEQREVERAVIHEGFDFKSGANNLALLFLNSPFKLNDH
IRTICLPTPNKSFAGRRCTVAGWGKMRYEDQRYSTVLKKVQLLVVNRNVC
EKFLRSTRLGAKFELPKNIICAGGELGRDTCTGDGGSALFCSIGGENSGV
YEQAGIVNWGVGCGQEGIPAIYTEVSKFTNWITEKLLPFDYRSGASFLDH

BO13967.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
SPH93-PA 494 CG6639-PA 1..494 1..494 2698 100 Plus
CG14990-PA 322 CG14990-PA 23..301 214..486 703 50 Plus
CG18478-PA 294 CG18478-PA 31..284 233..486 663 47.8 Plus
CG31827-PA 294 CG31827-PA 31..284 233..486 663 47.8 Plus
CG3117-PB 347 CG3117-PB 96..332 250..486 606 49.2 Plus