Clone Sequence Records
BO13967.3prime Sequence
777 bp (679 high quality bases) assembled on 2006-05-08
> BO13967.3prime
ATGGTCTAGAAAGCTTGCCCCACTCCTGTAATCGAAGGGCAGCAGCTTCT
CGGTAATCCAATTTGTAAACTTGGACACCTCCGTATATATGGCCGGAATG
CCCTCCTGCCCGCACCCAACGCCCCAGTTTACTATTCCAGCCTGCTCGTA
CACACCAGAGTTCTCCCCTCCGATTGAACAGAATAGGGCCGATCCTCCAT
CACCGGTGCAGGTATCGCGGCCTAACTCGCCTCCGGCGCAAATGATGTTC
TTGGGCAGCTCAAATTTAGCGCCCAACCTGGTCGACCTCAAGAACTTCTC
GCAAACATTTCGATTTACCACGAGCAACTGAACTTTCTTCAGGACGGTGG
AGTATCGTTGATCCTCGTATCTCATTTTTCCCCAACCGGCCACCGTGCAA
CGACGTCCTGCGAACGATTTATTTGGTGTAGGCAAACAGATAGTTCTGAT
GTGATCATTCAGTTTGAAGGGCGAATTTAGGAAAAGTAACGCCAAGTTGT
TGGCACCTGATTTGAAGTCAAATCCTTCATGGATTACTGCCCTTTCAACT
TCGCGCTGCTCAGACAAAAATATCTCTCGATCGGATTTTAAGTCCCAATC
GCCGGCCCTGACCACAAGTTCGGTTTCGATTGTAATTACCCGGTGAGCTA
CTGTTAGAACGACATTTGGTTGAATCAGGGATCCGCCAGCCAAGTACTGT
CCATTGTGAAAAATAGCAACAGCCCAGGGATATTGAGCTGGTCGTGCTTG
ATCAATGGTTATTCCTTCTACCTTTTG
BO13967.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6639-PA | 1485 | CG6639-RA | 729..1482 | 772..19 | 3770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPH93-RA | 1587 | CG6639-RA | 751..1509 | 777..19 | 3780 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17454341..17455099 | 19..777 | 3780 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:16:52 has no hits.
BO13967.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:16 Download gff for
BO13967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6639-PA | 724..1485 | 16..777 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:28 Download gff for
BO13967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6639-PA | 724..1485 | 16..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:42:45 Download gff for
BO13967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6639-RA | 751..1509 | 19..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:10 Download gff for
BO13967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPH93-RA | 751..1509 | 19..777 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:10 Download gff for
BO13967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17454341..17455099 | 19..777 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:42:45 Download gff for
BO13967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17454341..17455099 | 19..777 | 99 | | Plus |
BO13967.5prime Sequence
743 bp (634 high quality bases) assembled on 2006-05-08
> BO13967.5prime
GAAGTTATCAGTCGACATGAAGCATTGTTGGGCAATCGGAACTCTACTCT
TAGCAAGTGTCCTTATGGGCAATGCCTGTCGACATACTTGCGTTACCCGG
AATTTTTGTTTGTATGAGGAACCAACATTTGATTACCGCTCCAGTAATTG
CGGCAATACCAAAATTTGCTGTGCAGTTCTACGAAAGCCTGGAGGTACGG
TTTTAATTGAACCAAATGGCCCCGAAGATGATAAGGTTGGAGTAAACGGA
ATAAATGCACAACTATCGCCTACACGCGAACTCACTAGAGATCGCCCAAA
TACCATTGAGTCACAAGTAAAGGAAATCAACGACTTCAGTGGGCGTCCAA
CCAACAACGAAAGGAATCCAGCAACCGAACCGAACAACGGCGGGTATACA
ACACCCAACGGTGGGTATCCAGTAAACAACGGTGGGTATCCAGTAAACAA
CGGTGGGTATCCATCAAACAACGGTGGGTATCCATCAAACAACGGTGGGT
ATCCAGTAAACAACGGTGGGTATCCAGTAAACAACGGTGGGTATCCAGCA
AACAACGGTGGGTATCCAGCAAACAACGGTGGGTATCCAACAACCAACGT
TGGAAATCCAACAAACAACGGAGGGAACCCGACTACCAATTTTGGAAATC
CACAAACAACGGAGGGAACCCGACTACCAATGTTGGAAGCTCAGAGCTTT
TGTCACCAAGTTGCGGCATGAGCAACGCAAATGGCTTGCAAAT
BO13967.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6639-PA | 1485 | CG6639-RA | 1..636 | 17..652 | 3180 | 100 | Plus |
CG6639-PA | 1485 | CG6639-RA | 637..728 | 652..743 | 460 | 100 | Plus |
CG6639-PA | 1485 | CG6639-RA | 626..673 | 600..647 | 215 | 97.9 | Plus |
CG6639-PA | 1485 | CG6639-RA | 595..631 | 652..688 | 160 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPH93-RA | 1587 | CG6639-RA | 26..755 | 15..743 | 3625 | 99.9 | Plus |
SPH93-RA | 1587 | CG6639-RA | 457..700 | 383..647 | 645 | 83.4 | Plus |
SPH93-RA | 1587 | CG6639-RA | 394..658 | 446..688 | 620 | 83 | Plus |
SPH93-RA | 1587 | CG6639-RA | 478..700 | 383..605 | 605 | 84.8 | Plus |
SPH93-RA | 1587 | CG6639-RA | 394..616 | 467..688 | 595 | 84.8 | Plus |
SPH93-RA | 1587 | CG6639-RA | 394..531 | 488..625 | 450 | 88.4 | Plus |
SPH93-RA | 1587 | CG6639-RA | 499..636 | 383..520 | 450 | 88.4 | Plus |
SPH93-RA | 1587 | CG6639-RA | 394..510 | 509..625 | 360 | 87.2 | Plus |
SPH93-RA | 1587 | CG6639-RA | 520..636 | 383..499 | 360 | 87.2 | Plus |
SPH93-RA | 1587 | CG6639-RA | 394..489 | 530..625 | 270 | 85.4 | Plus |
SPH93-RA | 1587 | CG6639-RA | 541..636 | 383..478 | 270 | 85.4 | Plus |
SPH93-RA | 1587 | CG6639-RA | 562..678 | 383..499 | 180 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:28:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17455095..17455655 | 743..184 | 2755 | 99.8 | Minus |
2L | 23513712 | 2L | 17455150..17455414 | 647..383 | 875 | 88.7 | Minus |
2L | 23513712 | 2L | 17455726..17455898 | 187..15 | 865 | 100 | Minus |
2L | 23513712 | 2L | 17455192..17455456 | 688..425 | 825 | 88.3 | Minus |
2L | 23513712 | 2L | 17455177..17455393 | 599..383 | 620 | 85.7 | Minus |
2L | 23513712 | 2L | 17455277..17455456 | 625..446 | 615 | 89.4 | Minus |
2L | 23513712 | 2L | 17455150..17455372 | 605..383 | 605 | 84.8 | Minus |
2L | 23513712 | 2L | 17455234..17455456 | 688..467 | 570 | 84.8 | Minus |
2L | 23513712 | 2L | 17455214..17455351 | 520..383 | 450 | 88.4 | Minus |
2L | 23513712 | 2L | 17455319..17455456 | 625..488 | 450 | 88.4 | Minus |
2L | 23513712 | 2L | 17455214..17455330 | 499..383 | 360 | 87.2 | Minus |
2L | 23513712 | 2L | 17455340..17455456 | 625..509 | 360 | 87.2 | Minus |
2L | 23513712 | 2L | 17455214..17455309 | 478..383 | 270 | 85.4 | Minus |
2L | 23513712 | 2L | 17455361..17455456 | 625..530 | 270 | 85.4 | Minus |
2L | 23513712 | 2L | 17455172..17455288 | 499..383 | 180 | 76.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:29:00 has no hits.
BO13967.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:17 Download gff for
BO13967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6639-PA | 1..728 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:29 Download gff for
BO13967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6639-PA | 1..728 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:40:29 Download gff for
BO13967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6639-RA | 21..755 | 10..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:05 Download gff for
BO13967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPH93-RA | 21..755 | 10..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:05 Download gff for
BO13967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17455095..17455651 | 188..743 | 99 | <- | Minus |
2L | 17455726..17455903 | 10..187 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:40:29 Download gff for
BO13967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17455095..17455651 | 188..743 | 99 | <- | Minus |
arm_2L | 17455726..17455903 | 10..187 | 98 | | Minus |
BO13967.complete Sequence
1516 bp assembled on 2009-08-24
GenBank Submission: KX796204
> BO13967.complete
GAAGTTATCAGTCGACATGAAGCATTGTTGGGCAATCGGAACTCTACTCT
TAGCAAGTGTCCTTATGGGCAATGCCTGTCGACATACTTGCGTTACCCGG
AATTTTTGTTTGTATGAGGAACCAACATTTGATTACCGCTCCAGTAATTG
CGGCAATACCAAAATTTGCTGTGCAGTTCTACGAAAGCCTGGAGGTACGG
TTTTAATTGAACCAAATGGCCCCGAAGATGATAAGGTTGGAGTAAACGGA
ATAAATGCACAACTATCGCCTACACGCGAACTCACTAGAGATCGCCCAAA
TACCATTGAGTCACAAGTAAAGGAAATCAACGACTTCAGTGGGCGTCCAA
CCAACAACGAAAGGAATCCAGCAACCGAACCGAACAACGGCGGGTATACA
ACACCCAACGGTGGGTATCCAGTAAACAACGGTGGGTATCCAGTAAACAA
CGGTGGGTATCCATCAAACAACGGTGGGTATCCATCAAACAACGGTGGGT
ATCCAGTAAACAACGGTGGGTATCCAGTAAACAACGGTGGGTATCCAGCA
AACAACGGTGGGTATCCAGCAAACAACGGTGGGTATCCAACAACCAACGT
TGGAAATCCAACAAACAACGGAGGGAACCCGACTACCAATTTTGGAAATC
CAACAAACAACGGAGGGAACCCGACTACCAATGTTGGAAGCTCAGAGCTT
TTGTCACCAAGTTGCGGCATGAGCAACGCAAATGGCTTGCAAATGGTAGA
AGGAATAACCATTGATCAAGCACGACCAGCTCAATATCCCTGGGCTGTTG
CTATTTTTCACAATGGACAGTACTTGGCTGGCGGATCCCTGATTCAACCA
AATGTCGTTCTAACAGTAGCTCACCGGGTAATTACAATCGAAACCGAACT
TGTGGTCAGGGCCGGCGATTGGGACTTAAAATCCGATCGAGAGATATTTT
TGTCTGAGCAGCGCGAAGTTGAAAGGGCAGTAATCCATGAAGGATTTGAC
TTCAAATCAGGTGCCAACAACTTGGCGTTACTTTTCCTAAATTCGCCCTT
CAAACTGAATGATCACATCAGAACTATCTGTTTGCCTACACCAAATAAAT
CGTTCGCAGGACGTCGTTGCACGGTGGCCGGTTGGGGAAAAATGAGATAC
GAGGATCAACGATACTCCACCGTCCTGAAGAAAGTTCAGTTGCTCGTGGT
AAATCGAAATGTTTGCGAGAAGTTCTTGAGGTCGACCAGGTTGGGCGCTA
AATTTGAGCTGCCCAAGAACATCATTTGCGCCGGAGGCGAGTTAGGCCGC
GATACCTGCACCGGTGATGGAGGATCGGCCCTATTCTGTTCAATCGGAGG
GGAGAACTCTGGTGTGTACGAGCAGGCTGGAATAGTAAACTGGGGCGTTG
GGTGCGGGCAGGAGGGCATTCCGGCCATATATACGGAGGTGTCCAAGTTT
ACAAATTGGATTACCGAGAAGCTGCTGCCCTTCGATTACAGGAGTGGGGC
AAGCTTTCTAGACCAT
BO13967.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPH93-RA | 1485 | CG6639-PA | 1..1482 | 17..1498 | 7410 | 100 | Plus |
SPH93-RA | 1485 | CG6639-PA | 367..631 | 425..689 | 875 | 88.7 | Plus |
SPH93-RA | 1485 | CG6639-PA | 409..673 | 383..647 | 875 | 88.7 | Plus |
SPH93-RA | 1485 | CG6639-PA | 367..583 | 446..662 | 620 | 85.7 | Plus |
SPH93-RA | 1485 | CG6639-PA | 430..646 | 383..599 | 620 | 85.7 | Plus |
SPH93-RA | 1485 | CG6639-PA | 451..673 | 383..605 | 605 | 84.8 | Plus |
SPH93-RA | 1485 | CG6639-PA | 367..589 | 467..689 | 605 | 84.8 | Plus |
SPH93-RA | 1485 | CG6639-PA | 367..504 | 488..625 | 450 | 88.4 | Plus |
SPH93-RA | 1485 | CG6639-PA | 472..609 | 383..520 | 450 | 88.4 | Plus |
SPH93-RA | 1485 | CG6639-PA | 367..483 | 509..625 | 360 | 87.2 | Plus |
SPH93-RA | 1485 | CG6639-PA | 493..609 | 383..499 | 360 | 87.2 | Plus |
SPH93-RA | 1485 | CG6639-PA | 367..462 | 530..625 | 270 | 85.4 | Plus |
SPH93-RA | 1485 | CG6639-PA | 514..609 | 383..478 | 270 | 85.4 | Plus |
SPH93-RA | 1485 | CG6639-PA | 367..483 | 551..667 | 180 | 76.9 | Plus |
SPH93-RA | 1485 | CG6639-PA | 535..651 | 383..499 | 180 | 76.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPH93-RA | 1587 | CG6639-RA | 26..1509 | 15..1498 | 7420 | 100 | Plus |
SPH93-RA | 1587 | CG6639-RA | 394..658 | 425..689 | 875 | 88.7 | Plus |
SPH93-RA | 1587 | CG6639-RA | 436..700 | 383..647 | 875 | 88.7 | Plus |
SPH93-RA | 1587 | CG6639-RA | 394..610 | 446..662 | 620 | 85.7 | Plus |
SPH93-RA | 1587 | CG6639-RA | 457..673 | 383..599 | 620 | 85.7 | Plus |
SPH93-RA | 1587 | CG6639-RA | 478..700 | 383..605 | 605 | 84.8 | Plus |
SPH93-RA | 1587 | CG6639-RA | 394..616 | 467..689 | 605 | 84.8 | Plus |
SPH93-RA | 1587 | CG6639-RA | 394..531 | 488..625 | 450 | 88.4 | Plus |
SPH93-RA | 1587 | CG6639-RA | 499..636 | 383..520 | 450 | 88.4 | Plus |
SPH93-RA | 1587 | CG6639-RA | 394..510 | 509..625 | 360 | 87.2 | Plus |
SPH93-RA | 1587 | CG6639-RA | 520..636 | 383..499 | 360 | 87.2 | Plus |
SPH93-RA | 1587 | CG6639-RA | 394..489 | 530..625 | 270 | 85.4 | Plus |
SPH93-RA | 1587 | CG6639-RA | 541..636 | 383..478 | 270 | 85.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17454341..17455655 | 1498..184 | 6575 | 100 | Minus |
2L | 23513712 | 2L | 17455150..17455414 | 647..383 | 875 | 88.7 | Minus |
2L | 23513712 | 2L | 17455192..17455456 | 689..425 | 875 | 88.7 | Minus |
2L | 23513712 | 2L | 17455726..17455898 | 187..15 | 865 | 100 | Minus |
2L | 23513712 | 2L | 17455177..17455393 | 599..383 | 620 | 85.7 | Minus |
2L | 23513712 | 2L | 17455240..17455456 | 662..446 | 620 | 85.7 | Minus |
2L | 23513712 | 2L | 17455150..17455372 | 605..383 | 605 | 84.8 | Minus |
2L | 23513712 | 2L | 17455234..17455456 | 689..467 | 605 | 84.8 | Minus |
2L | 23513712 | 2L | 17455214..17455351 | 520..383 | 450 | 88.4 | Minus |
2L | 23513712 | 2L | 17455319..17455456 | 625..488 | 450 | 88.4 | Minus |
2L | 23513712 | 2L | 17455214..17455330 | 499..383 | 360 | 87.2 | Minus |
2L | 23513712 | 2L | 17455340..17455456 | 625..509 | 360 | 87.2 | Minus |
2L | 23513712 | 2L | 17455214..17455309 | 478..383 | 270 | 85.4 | Minus |
2L | 23513712 | 2L | 17455361..17455456 | 625..530 | 270 | 85.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:33:16 has no hits.
BO13967.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:00 Download gff for
BO13967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6639-RA | 22..1503 | 17..1500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:54 Download gff for
BO13967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6639-RA | 28..1509 | 17..1500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:19 Download gff for
BO13967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPH93-RA | 28..1509 | 17..1500 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:19 Download gff for
BO13967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17454338..17455651 | 188..1500 | 99 | <- | Minus |
2L | 17455726..17455896 | 17..187 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:54 Download gff for
BO13967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17454338..17455651 | 188..1500 | 99 | <- | Minus |
arm_2L | 17455726..17455896 | 17..187 | 100 | | Minus |
BO13967.pep Sequence
Translation from 16 to 1516
> BO13967.pep
MKHCWAIGTLLLASVLMGNACRHTCVTRNFCLYEEPTFDYRSSNCGNTKI
CCAVLRKPGGTVLIEPNGPEDDKVGVNGINAQLSPTRELTRDRPNTIESQ
VKEINDFSGRPTNNERNPATEPNNGGYTTPNGGYPVNNGGYPVNNGGYPS
NNGGYPSNNGGYPVNNGGYPVNNGGYPANNGGYPANNGGYPTTNVGNPTN
NGGNPTTNFGNPTNNGGNPTTNVGSSELLSPSCGMSNANGLQMVEGITID
QARPAQYPWAVAIFHNGQYLAGGSLIQPNVVLTVAHRVITIETELVVRAG
DWDLKSDREIFLSEQREVERAVIHEGFDFKSGANNLALLFLNSPFKLNDH
IRTICLPTPNKSFAGRRCTVAGWGKMRYEDQRYSTVLKKVQLLVVNRNVC
EKFLRSTRLGAKFELPKNIICAGGELGRDTCTGDGGSALFCSIGGENSGV
YEQAGIVNWGVGCGQEGIPAIYTEVSKFTNWITEKLLPFDYRSGASFLDH
BO13967.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPH93-PA | 494 | CG6639-PA | 1..494 | 1..494 | 2698 | 100 | Plus |
CG14990-PA | 322 | CG14990-PA | 23..301 | 214..486 | 703 | 50 | Plus |
CG18478-PA | 294 | CG18478-PA | 31..284 | 233..486 | 663 | 47.8 | Plus |
CG31827-PA | 294 | CG31827-PA | 31..284 | 233..486 | 663 | 47.8 | Plus |
CG3117-PB | 347 | CG3117-PB | 96..332 | 250..486 | 606 | 49.2 | Plus |