Clone BO13973 Report

Search the DGRC for BO13973

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:139
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG6299-RA
Protein status:BO13973.pep: validated full length
Sequenced Size:649

Clone Sequence Records

BO13973.3prime Sequence

647 bp (615 high quality bases) assembled on 2006-05-08

> BO13973.3prime
ATGGTCTAGAAAGCTTGCCACCTTTCGTGCATCGTCCAAGTTGTGCGCCT
TCAGCAGGGCGTCGATCGAGTCCAGATGGGCGCGCATACGCGGCAGGAAG
CTGGTCAGCACCTCGATGTTCTCCGCCTGGGCGACACCCTGGCCCAGCAG
TTGGCTGCGCGTGGGCACCCAACTGTAGATGATCTTGATTGTGCTCTGGA
CGATGAAGCCGTGGTAGGGCTTCAATGTGCGTTCGTACGCGTCCTGCAGA
TGCTGCTTAAGTGCCTCCTTGGCCTGGGCATCGTTGTAGATGTTCTCGAA
GAAGGTGCATATGAGCTGCAGGCCGCGCTTCAGCCAGAGCAGCGCGTTGG
CCGCAAAGTCGTCCACGTTCACGTTCAGCACGATCAGATCCTCCAGATAC
TGGTACTTGACCACATCCGCTCCGTAGGCTTTCGTCAGTTTGTTTATGTT
TCCGTTCATGTCGCTGATCACGGGTGTGAATAGTTTGCCGAAGCTCTCTA
TGACGGTTACTATCTCCTTGGAGGCGTCGAGAAAGGCCTGTGTCTCCAGC
TTATCAGCGGTATCGCCGATGGCCGGAAATCCGCGCAGCGCCTTGAACTG
AATGCGCGCCGCCGATCCCTCGCTGGCTGCCATGTCAACTGATAACT

BO13973.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6299-PB 618 CG6299-RB 1..615 633..19 3075 100 Minus
CG6299-PA 618 CG6299-RA 1..615 633..19 3075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6299-RE 838 CG6299-RE 119..733 633..19 3075 100 Minus
CG6299-RD 1003 CG6299-RD 284..898 633..19 3075 100 Minus
CG6299-RC 987 CG6299-RC 273..887 633..19 3075 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15466219..15466476 441..184 1290 100 Minus
X 23542271 X 15466541..15466707 185..19 835 100 Minus
X 23542271 X 15465858..15465993 633..498 680 100 Minus
X 23542271 X 15466067..15466124 499..442 290 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:31:36 has no hits.

BO13973.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:26 Download gff for BO13973.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6299-PA 1..618 16..633 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:42 Download gff for BO13973.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6299-PA 1..618 16..633 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:00:29 Download gff for BO13973.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6294-RA 1824..2446 19..640 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:13 Download gff for BO13973.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6299-RC 265..887 19..640 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:13 Download gff for BO13973.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15465850..15465993 498..640 97 -> Minus
X 15466069..15466124 442..497 100 -> Minus
X 15466219..15466476 184..441 100 -> Minus
X 15466543..15466707 19..183 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:00:29 Download gff for BO13973.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15359883..15360026 498..640 97 -> Minus
arm_X 15360102..15360157 442..497 100 -> Minus
arm_X 15360252..15360509 184..441 100 -> Minus
arm_X 15360576..15360740 19..183 100   Minus

BO13973.5prime Sequence

647 bp (646 high quality bases) assembled on 2006-05-08

> BO13973.5prime
GAAGTTATCAGTCGACATGGCAGCCAGCGAGGGATCGGCGGCGCGCATTC
AGTTCAAGGCGCTGCGCGGATTTCCGGCCATCGGCGATACCGCTGATAAG
CTGGAGACACAGGCCTTTCTCGACGCCTCCAAGGAGATAGTAACCGTCAT
AGAGAGCTTCGGCAAACTATTCACACCCGTGATCAGCGACATGAACGGAA
ACATAAACAAACTGACGAAAGCCTACGGAGCGGATGTGGTCAAGTACCAG
TATCTGGAGGATCTGATCGTGCTGAACGTGAACGTGGACGACTTTGCGGC
CAACGCGCTGCTCTGGCTGAAGCGCGGCCTGCAGCTCATATGCACCTTCT
TCGAGAACATCTACAACGATGCCCAGGCCAAGGAGGCACTTAAGCAGCAT
CTGCAGGACGCGTACGAACGCACATTGAAGCCCTACCACGGCTTCATCGT
CCAGAGCACAATCAAGATCATCTACAGTTGGGTGCCCACGCGCAGCCAAC
TGCTGGGCCAGGGTGTCGCCCAGGCGGAGAACATCGAGGTGCTGACCAGC
TTCCTGCCGCGTATGCGCGCCCATCTGGACTCGATCGACGCCCTGCTGAA
GGCGCACAACTTGGACGATGCACGAAAGGTGGCAAGCTTTCTAGACC

BO13973.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6299-PB 618 CG6299-RB 1..615 17..631 3075 100 Plus
CG6299-PA 618 CG6299-RA 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6299-RE 838 CG6299-RE 119..733 17..631 3075 100 Plus
CG6299-RD 1003 CG6299-RD 284..898 17..631 3075 100 Plus
CG6299-RC 987 CG6299-RC 273..887 17..631 3075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15466219..15466476 209..466 1290 100 Plus
X 23542271 X 15466541..15466707 465..631 835 100 Plus
X 23542271 X 15465858..15465993 17..152 680 100 Plus
X 23542271 X 15466067..15466124 151..208 290 100 Plus
Blast to na_te.dros performed on 2015-02-11 14:22:21 has no hits.

BO13973.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:27 Download gff for BO13973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6299-PA 1..618 17..634 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:44 Download gff for BO13973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6299-PA 1..618 17..634 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:15:38 Download gff for BO13973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6294-RA 1826..2446 9..631 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:04 Download gff for BO13973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6299-RC 267..887 9..631 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:04 Download gff for BO13973.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15465852..15465993 9..152 97 -> Plus
X 15466069..15466124 153..208 100 -> Plus
X 15466219..15466476 209..466 100 -> Plus
X 15466543..15466707 467..631 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:15:38 Download gff for BO13973.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15360102..15360157 153..208 100 -> Plus
arm_X 15359885..15360026 9..152 97 -> Plus
arm_X 15360252..15360509 209..466 100 -> Plus
arm_X 15360576..15360740 467..631 100   Plus

BO13973.complete Sequence

649 bp assembled on 2006-10-11

GenBank Submission: FJ632985

> BO13973.complete
GAAGTTATCAGTCGACATGGCAGCCAGCGAGGGATCGGCGGCGCGCATTC
AGTTCAAGGCGCTGCGCGGATTTCCGGCCATCGGCGATACCGCTGATAAG
CTGGAGACACAGGCCTTTCTCGACGCCTCCAAGGAGATAGTAACCGTCAT
AGAGAGCTTCGGCAAACTATTCACACCCGTGATCAGCGACATGAACGGAA
ACATAAACAAACTGACGAAAGCCTACGGAGCGGATGTGGTCAAGTACCAG
TATCTGGAGGATCTGATCGTGCTGAACGTGAACGTGGACGACTTTGCGGC
CAACGCGCTGCTCTGGCTGAAGCGCGGCCTGCAGCTCATATGCACCTTCT
TCGAGAACATCTACAACGATGCCCAGGCCAAGGAGGCACTTAAGCAGCAT
CTGCAGGACGCGTACGAACGCACATTGAAGCCCTACCACGGCTTCATCGT
CCAGAGCACAATCAAGATCATCTACAGTTGGGTGCCCACGCGCAGCCAAC
TGCTGGGCCAGGGTGTCGCCCAGGCGGAGAACATCGAGGTGCTGACCAGC
TTCCTGCCGCGTATGCGCGCCCATCTGGACTCGATCGACGCCCTGCTGAA
GGCGCACAACTTGGACGATGCACGAAAGGTGGCAAGCTTTCTAGACCAT

BO13973.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6299-RE 618 CG6299-PE 1..615 17..631 3075 100 Plus
CG6299-RD 618 CG6299-PD 1..615 17..631 3075 100 Plus
CG6299-RC 618 CG6299-PC 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6299-RE 838 CG6299-RE 119..733 17..631 3075 100 Plus
CG6299-RD 1003 CG6299-RD 284..898 17..631 3075 100 Plus
CG6299-RC 987 CG6299-RC 273..887 17..631 3075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15466219..15466476 209..466 1290 100 Plus
X 23542271 X 15466541..15466707 465..631 835 100 Plus
X 23542271 X 15465858..15465993 17..152 680 100 Plus
X 23542271 X 15466067..15466124 151..208 290 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:40:49 has no hits.

BO13973.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:29 Download gff for BO13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG6299-RA 1..618 17..634 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:25 Download gff for BO13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG6299-RA 288..908 9..631 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:37 Download gff for BO13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG6294-RA 1832..2446 17..633 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:30 Download gff for BO13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG6299-RA 288..908 9..631 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:07 Download gff for BO13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG6299-RC 273..887 17..633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:07 Download gff for BO13973.complete
Subject Subject Range Query Range Percent Splice Strand
X 15465858..15465993 17..152 100 -> Plus
X 15466069..15466124 153..208 100 -> Plus
X 15466219..15466476 209..466 100 -> Plus
X 15466543..15466707 467..633 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:37 Download gff for BO13973.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15359891..15360026 17..152 100 -> Plus
arm_X 15360102..15360157 153..208 100 -> Plus
arm_X 15360252..15360509 209..466 100 -> Plus
arm_X 15360576..15360740 467..633 98   Plus

BO13973.pep Sequence

Translation from 16 to 649

> BO13973.pep
MAASEGSAARIQFKALRGFPAIGDTADKLETQAFLDASKEIVTVIESFGK
LFTPVISDMNGNINKLTKAYGADVVKYQYLEDLIVLNVNVDDFAANALLW
LKRGLQLICTFFENIYNDAQAKEALKQHLQDAYERTLKPYHGFIVQSTIK
IIYSWVPTRSQLLGQGVAQAENIEVLTSFLPRMRAHLDSIDALLKAHNLD
DARKVASFLDH

BO13973.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6299-PE 205 CG6299-PE 1..205 1..205 1035 100 Plus
CG6299-PD 205 CG6299-PD 1..205 1..205 1035 100 Plus
CG6299-PC 205 CG6299-PC 1..205 1..205 1035 100 Plus
CG6299-PA 205 CG6299-PA 1..205 1..205 1035 100 Plus
CG6299-PB 205 CG6299-PB 1..205 1..205 1035 100 Plus