Clone Sequence Records
BO13973.3prime Sequence
647 bp (615 high quality bases) assembled on 2006-05-08
> BO13973.3prime
ATGGTCTAGAAAGCTTGCCACCTTTCGTGCATCGTCCAAGTTGTGCGCCT
TCAGCAGGGCGTCGATCGAGTCCAGATGGGCGCGCATACGCGGCAGGAAG
CTGGTCAGCACCTCGATGTTCTCCGCCTGGGCGACACCCTGGCCCAGCAG
TTGGCTGCGCGTGGGCACCCAACTGTAGATGATCTTGATTGTGCTCTGGA
CGATGAAGCCGTGGTAGGGCTTCAATGTGCGTTCGTACGCGTCCTGCAGA
TGCTGCTTAAGTGCCTCCTTGGCCTGGGCATCGTTGTAGATGTTCTCGAA
GAAGGTGCATATGAGCTGCAGGCCGCGCTTCAGCCAGAGCAGCGCGTTGG
CCGCAAAGTCGTCCACGTTCACGTTCAGCACGATCAGATCCTCCAGATAC
TGGTACTTGACCACATCCGCTCCGTAGGCTTTCGTCAGTTTGTTTATGTT
TCCGTTCATGTCGCTGATCACGGGTGTGAATAGTTTGCCGAAGCTCTCTA
TGACGGTTACTATCTCCTTGGAGGCGTCGAGAAAGGCCTGTGTCTCCAGC
TTATCAGCGGTATCGCCGATGGCCGGAAATCCGCGCAGCGCCTTGAACTG
AATGCGCGCCGCCGATCCCTCGCTGGCTGCCATGTCAACTGATAACT
BO13973.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6299-PB | 618 | CG6299-RB | 1..615 | 633..19 | 3075 | 100 | Minus |
CG6299-PA | 618 | CG6299-RA | 1..615 | 633..19 | 3075 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6299-RE | 838 | CG6299-RE | 119..733 | 633..19 | 3075 | 100 | Minus |
CG6299-RD | 1003 | CG6299-RD | 284..898 | 633..19 | 3075 | 100 | Minus |
CG6299-RC | 987 | CG6299-RC | 273..887 | 633..19 | 3075 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15466219..15466476 | 441..184 | 1290 | 100 | Minus |
X | 23542271 | X | 15466541..15466707 | 185..19 | 835 | 100 | Minus |
X | 23542271 | X | 15465858..15465993 | 633..498 | 680 | 100 | Minus |
X | 23542271 | X | 15466067..15466124 | 499..442 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:31:36 has no hits.
BO13973.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:26 Download gff for
BO13973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-PA | 1..618 | 16..633 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:42 Download gff for
BO13973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-PA | 1..618 | 16..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:00:29 Download gff for
BO13973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6294-RA | 1824..2446 | 19..640 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:13 Download gff for
BO13973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-RC | 265..887 | 19..640 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:13 Download gff for
BO13973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15465850..15465993 | 498..640 | 97 | -> | Minus |
X | 15466069..15466124 | 442..497 | 100 | -> | Minus |
X | 15466219..15466476 | 184..441 | 100 | -> | Minus |
X | 15466543..15466707 | 19..183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:00:29 Download gff for
BO13973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15359883..15360026 | 498..640 | 97 | -> | Minus |
arm_X | 15360102..15360157 | 442..497 | 100 | -> | Minus |
arm_X | 15360252..15360509 | 184..441 | 100 | -> | Minus |
arm_X | 15360576..15360740 | 19..183 | 100 | | Minus |
BO13973.5prime Sequence
647 bp (646 high quality bases) assembled on 2006-05-08
> BO13973.5prime
GAAGTTATCAGTCGACATGGCAGCCAGCGAGGGATCGGCGGCGCGCATTC
AGTTCAAGGCGCTGCGCGGATTTCCGGCCATCGGCGATACCGCTGATAAG
CTGGAGACACAGGCCTTTCTCGACGCCTCCAAGGAGATAGTAACCGTCAT
AGAGAGCTTCGGCAAACTATTCACACCCGTGATCAGCGACATGAACGGAA
ACATAAACAAACTGACGAAAGCCTACGGAGCGGATGTGGTCAAGTACCAG
TATCTGGAGGATCTGATCGTGCTGAACGTGAACGTGGACGACTTTGCGGC
CAACGCGCTGCTCTGGCTGAAGCGCGGCCTGCAGCTCATATGCACCTTCT
TCGAGAACATCTACAACGATGCCCAGGCCAAGGAGGCACTTAAGCAGCAT
CTGCAGGACGCGTACGAACGCACATTGAAGCCCTACCACGGCTTCATCGT
CCAGAGCACAATCAAGATCATCTACAGTTGGGTGCCCACGCGCAGCCAAC
TGCTGGGCCAGGGTGTCGCCCAGGCGGAGAACATCGAGGTGCTGACCAGC
TTCCTGCCGCGTATGCGCGCCCATCTGGACTCGATCGACGCCCTGCTGAA
GGCGCACAACTTGGACGATGCACGAAAGGTGGCAAGCTTTCTAGACC
BO13973.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6299-PB | 618 | CG6299-RB | 1..615 | 17..631 | 3075 | 100 | Plus |
CG6299-PA | 618 | CG6299-RA | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6299-RE | 838 | CG6299-RE | 119..733 | 17..631 | 3075 | 100 | Plus |
CG6299-RD | 1003 | CG6299-RD | 284..898 | 17..631 | 3075 | 100 | Plus |
CG6299-RC | 987 | CG6299-RC | 273..887 | 17..631 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:22:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15466219..15466476 | 209..466 | 1290 | 100 | Plus |
X | 23542271 | X | 15466541..15466707 | 465..631 | 835 | 100 | Plus |
X | 23542271 | X | 15465858..15465993 | 17..152 | 680 | 100 | Plus |
X | 23542271 | X | 15466067..15466124 | 151..208 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:22:21 has no hits.
BO13973.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:27 Download gff for
BO13973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-PA | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:44 Download gff for
BO13973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-PA | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:15:38 Download gff for
BO13973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6294-RA | 1826..2446 | 9..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:04 Download gff for
BO13973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-RC | 267..887 | 9..631 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:04 Download gff for
BO13973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15465852..15465993 | 9..152 | 97 | -> | Plus |
X | 15466069..15466124 | 153..208 | 100 | -> | Plus |
X | 15466219..15466476 | 209..466 | 100 | -> | Plus |
X | 15466543..15466707 | 467..631 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:15:38 Download gff for
BO13973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15360102..15360157 | 153..208 | 100 | -> | Plus |
arm_X | 15359885..15360026 | 9..152 | 97 | -> | Plus |
arm_X | 15360252..15360509 | 209..466 | 100 | -> | Plus |
arm_X | 15360576..15360740 | 467..631 | 100 | | Plus |
BO13973.complete Sequence
649 bp assembled on 2006-10-11
GenBank Submission: FJ632985
> BO13973.complete
GAAGTTATCAGTCGACATGGCAGCCAGCGAGGGATCGGCGGCGCGCATTC
AGTTCAAGGCGCTGCGCGGATTTCCGGCCATCGGCGATACCGCTGATAAG
CTGGAGACACAGGCCTTTCTCGACGCCTCCAAGGAGATAGTAACCGTCAT
AGAGAGCTTCGGCAAACTATTCACACCCGTGATCAGCGACATGAACGGAA
ACATAAACAAACTGACGAAAGCCTACGGAGCGGATGTGGTCAAGTACCAG
TATCTGGAGGATCTGATCGTGCTGAACGTGAACGTGGACGACTTTGCGGC
CAACGCGCTGCTCTGGCTGAAGCGCGGCCTGCAGCTCATATGCACCTTCT
TCGAGAACATCTACAACGATGCCCAGGCCAAGGAGGCACTTAAGCAGCAT
CTGCAGGACGCGTACGAACGCACATTGAAGCCCTACCACGGCTTCATCGT
CCAGAGCACAATCAAGATCATCTACAGTTGGGTGCCCACGCGCAGCCAAC
TGCTGGGCCAGGGTGTCGCCCAGGCGGAGAACATCGAGGTGCTGACCAGC
TTCCTGCCGCGTATGCGCGCCCATCTGGACTCGATCGACGCCCTGCTGAA
GGCGCACAACTTGGACGATGCACGAAAGGTGGCAAGCTTTCTAGACCAT
BO13973.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6299-RE | 618 | CG6299-PE | 1..615 | 17..631 | 3075 | 100 | Plus |
CG6299-RD | 618 | CG6299-PD | 1..615 | 17..631 | 3075 | 100 | Plus |
CG6299-RC | 618 | CG6299-PC | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6299-RE | 838 | CG6299-RE | 119..733 | 17..631 | 3075 | 100 | Plus |
CG6299-RD | 1003 | CG6299-RD | 284..898 | 17..631 | 3075 | 100 | Plus |
CG6299-RC | 987 | CG6299-RC | 273..887 | 17..631 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15466219..15466476 | 209..466 | 1290 | 100 | Plus |
X | 23542271 | X | 15466541..15466707 | 465..631 | 835 | 100 | Plus |
X | 23542271 | X | 15465858..15465993 | 17..152 | 680 | 100 | Plus |
X | 23542271 | X | 15466067..15466124 | 151..208 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:40:49 has no hits.
BO13973.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:29 Download gff for
BO13973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-RA | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:25 Download gff for
BO13973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-RA | 288..908 | 9..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:37 Download gff for
BO13973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6294-RA | 1832..2446 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:30 Download gff for
BO13973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-RA | 288..908 | 9..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:07 Download gff for
BO13973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-RC | 273..887 | 17..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:07 Download gff for
BO13973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15465858..15465993 | 17..152 | 100 | -> | Plus |
X | 15466069..15466124 | 153..208 | 100 | -> | Plus |
X | 15466219..15466476 | 209..466 | 100 | -> | Plus |
X | 15466543..15466707 | 467..633 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:37 Download gff for
BO13973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15359891..15360026 | 17..152 | 100 | -> | Plus |
arm_X | 15360102..15360157 | 153..208 | 100 | -> | Plus |
arm_X | 15360252..15360509 | 209..466 | 100 | -> | Plus |
arm_X | 15360576..15360740 | 467..633 | 98 | | Plus |
BO13973.pep Sequence
Translation from 16 to 649
> BO13973.pep
MAASEGSAARIQFKALRGFPAIGDTADKLETQAFLDASKEIVTVIESFGK
LFTPVISDMNGNINKLTKAYGADVVKYQYLEDLIVLNVNVDDFAANALLW
LKRGLQLICTFFENIYNDAQAKEALKQHLQDAYERTLKPYHGFIVQSTIK
IIYSWVPTRSQLLGQGVAQAENIEVLTSFLPRMRAHLDSIDALLKAHNLD
DARKVASFLDH
BO13973.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6299-PE | 205 | CG6299-PE | 1..205 | 1..205 | 1035 | 100 | Plus |
CG6299-PD | 205 | CG6299-PD | 1..205 | 1..205 | 1035 | 100 | Plus |
CG6299-PC | 205 | CG6299-PC | 1..205 | 1..205 | 1035 | 100 | Plus |
CG6299-PA | 205 | CG6299-PA | 1..205 | 1..205 | 1035 | 100 | Plus |
CG6299-PB | 205 | CG6299-PB | 1..205 | 1..205 | 1035 | 100 | Plus |