Clone Sequence Records
BO13975.complete Sequence
586 bp assembled on 2008-09-03
GenBank Submission: KX795339
> BO13975.complete
GAAGTTATCAGTCGACATGTCGATCTCCGATTTCCGCAAAAAGAAGCTGC
TTTTTCTGTTCAATGTGTTCTTTGATGTGAACCAAAGCGGCGAAATCGAC
GTTAAGGACTTCGAGCTGGCCATCGAGCGCGTTTGCCAACTGCGCGGCTG
GCAGAAGGACACGCCGAAGAACAAGGAGACCTACGACCTGATGATGGAAA
TCTGGACTGGCCTGCGCTCCAAGGCCGACAAGGACAACGATGGACAGGTC
AGCGTGGACGAGTGGTGCAACATGTGGGACGCCTATGCCAAGGATCCCAG
CAGCGTGATGGACTGGCAGAATGCCTACATGAACTTCATGTTCGACCTGG
AGGATGCCTCGCACGATGGAGGCATCGATGTGACCGAATTCACGCTGGTC
TGCTCCAGCTATGGCCTGGAGAAGACCGAGTGTGAGGAAGCCTTTGCGAA
GATGTCTCAGGGGCAGAGCGAGGTCACCCGGGAGCAGTTCGCCGCCTTGT
GGAAGGAGTACTTCGCCGCCGAGGATGTGAATGCGCCTGGCAACTACATT
TTTGGAAAGACCAGTTTCGCAAGCTTTCTAGACCAT
BO13975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scp2-RA | 555 | CG14904-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scp2-RA | 1283 | CG14904-RA | 201..752 | 17..568 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16575074..16575397 | 568..245 | 1620 | 100 | Minus |
3R | 32079331 | 3R | 16576921..16577044 | 249..126 | 620 | 100 | Minus |
3R | 32079331 | 3R | 16578990..16579047 | 74..17 | 290 | 100 | Minus |
3R | 32079331 | 3R | 16577321..16577374 | 127..74 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:31:21 has no hits.
BO13975.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:43 Download gff for
BO13975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp2-RA | 193..753 | 9..573 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:52 Download gff for
BO13975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp2-RA | 201..752 | 17..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:20 Download gff for
BO13975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp2-RA | 198..749 | 17..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:54 Download gff for
BO13975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp2-RA | 201..752 | 17..570 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:54 Download gff for
BO13975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16578990..16579047 | 17..74 | 100 | | Minus |
3R | 16575072..16575394 | 248..570 | 99 | <- | Minus |
3R | 16576923..16577042 | 128..247 | 100 | <- | Minus |
3R | 16577321..16577373 | 75..127 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:52 Download gff for
BO13975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12400794..12401116 | 248..570 | 99 | <- | Minus |
arm_3R | 12402645..12402764 | 128..247 | 100 | <- | Minus |
arm_3R | 12403043..12403095 | 75..127 | 100 | <- | Minus |
arm_3R | 12404712..12404769 | 17..74 | 100 | | Minus |
BO13975.5prime Sequence
512 bp (471 high quality bases) assembled on 2006-05-08
> BO13975.5prime
GAAGTTATCAGTCGACATGTCGATCTCCGATTTCCGCAAAAAGAAGCTGC
TTTTTCTGTTCAATGTGTTCTTTGATGTGAACCAAAGCGGCGAAATCGAC
GTTAAGGACTTCGAGCTGGCCATCGAGCGCGTTTGCCAACTGCGCGGCTG
GCAGAAGGACACGCCGAAGAACAAGGAGACCTACGACCTGATGATGGAAA
TCTGGACTGGCCTGCGCTCCAAGGCCGACAAGGACAACGATGGACAGGTC
AGCGTGGACGAGTGGTGCAACATGTGGGACGCCTATGCCAAGGATCCCAG
CAGCGTGATGGACTGGCAGAATGCCTACATGAACTTCATGTTCGACCTGG
AGGATGCCTCGCACGATGGAGGCATCGATGTGACCGAATTCACGCTGGTC
TGCTCCAGCTATGGCCTGGAGAAGACCGAGTGTGAGGAAGCCTTTGCGAA
GATGTCTCAGGGGCAGAGCGAGGTCACCCGGGAGCAGTTCGCCGCCTTGG
GGAAGGAGTACT
BO13975.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14904-PA | 555 | Scp2-RA | 1..496 | 17..512 | 2455 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scp2-RA | 1283 | CG14904-RA | 201..696 | 17..512 | 2465 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16575130..16575397 | 512..245 | 1325 | 99.6 | Minus |
3R | 32079331 | 3R | 16576921..16577044 | 249..126 | 620 | 100 | Minus |
3R | 32079331 | 3R | 16578990..16579047 | 74..17 | 290 | 100 | Minus |
3R | 32079331 | 3R | 16577321..16577374 | 127..74 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:02:00 has no hits.
BO13975.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:28 Download gff for
BO13975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp2-PA | 1..496 | 17..512 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:45 Download gff for
BO13975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14904-PA | 1..496 | 17..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:35:04 Download gff for
BO13975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp2-RA | 196..696 | 9..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:05:10 Download gff for
BO13975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp2-RA | 196..696 | 9..512 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:05:10 Download gff for
BO13975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16575130..16575394 | 248..512 | 99 | <- | Minus |
3R | 16576923..16577042 | 128..247 | 100 | <- | Minus |
3R | 16577321..16577373 | 75..127 | 100 | <- | Minus |
3R | 16578990..16579052 | 9..74 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:35:04 Download gff for
BO13975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12400852..12401116 | 248..512 | 99 | <- | Minus |
arm_3R | 12402645..12402764 | 128..247 | 100 | <- | Minus |
arm_3R | 12403043..12403095 | 75..127 | 100 | <- | Minus |
arm_3R | 12404712..12404774 | 9..74 | 93 | | Minus |
BO13975.pep Sequence
Translation from 16 to 586
> BO13975.pep
MSISDFRKKKLLFLFNVFFDVNQSGEIDVKDFELAIERVCQLRGWQKDTP
KNKETYDLMMEIWTGLRSKADKDNDGQVSVDEWCNMWDAYAKDPSSVMDW
QNAYMNFMFDLEDASHDGGIDVTEFTLVCSSYGLEKTECEEAFAKMSQGQ
SEVTREQFAALWKEYFAAEDVNAPGNYIFGKTSFASFLDH
BO13975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scp2-PA | 184 | CG14904-PA | 1..184 | 1..184 | 990 | 100 | Plus |