Clone BO13975 Report

Search the DGRC for BO13975

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:139
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptScp2-RA
Protein status:BO13975.pep: Inserted from web
Sequenced Size:586

Clone Sequence Records

BO13975.complete Sequence

586 bp assembled on 2008-09-03

GenBank Submission: KX795339

> BO13975.complete
GAAGTTATCAGTCGACATGTCGATCTCCGATTTCCGCAAAAAGAAGCTGC
TTTTTCTGTTCAATGTGTTCTTTGATGTGAACCAAAGCGGCGAAATCGAC
GTTAAGGACTTCGAGCTGGCCATCGAGCGCGTTTGCCAACTGCGCGGCTG
GCAGAAGGACACGCCGAAGAACAAGGAGACCTACGACCTGATGATGGAAA
TCTGGACTGGCCTGCGCTCCAAGGCCGACAAGGACAACGATGGACAGGTC
AGCGTGGACGAGTGGTGCAACATGTGGGACGCCTATGCCAAGGATCCCAG
CAGCGTGATGGACTGGCAGAATGCCTACATGAACTTCATGTTCGACCTGG
AGGATGCCTCGCACGATGGAGGCATCGATGTGACCGAATTCACGCTGGTC
TGCTCCAGCTATGGCCTGGAGAAGACCGAGTGTGAGGAAGCCTTTGCGAA
GATGTCTCAGGGGCAGAGCGAGGTCACCCGGGAGCAGTTCGCCGCCTTGT
GGAAGGAGTACTTCGCCGCCGAGGATGTGAATGCGCCTGGCAACTACATT
TTTGGAAAGACCAGTTTCGCAAGCTTTCTAGACCAT

BO13975.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
Scp2-RA 555 CG14904-PA 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Scp2-RA 1283 CG14904-RA 201..752 17..568 2760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16575074..16575397 568..245 1620 100 Minus
3R 32079331 3R 16576921..16577044 249..126 620 100 Minus
3R 32079331 3R 16578990..16579047 74..17 290 100 Minus
3R 32079331 3R 16577321..16577374 127..74 270 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:31:21 has no hits.

BO13975.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:43 Download gff for BO13975.complete
Subject Subject Range Query Range Percent Splice Strand
Scp2-RA 193..753 9..573 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:52 Download gff for BO13975.complete
Subject Subject Range Query Range Percent Splice Strand
Scp2-RA 201..752 17..570 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:20 Download gff for BO13975.complete
Subject Subject Range Query Range Percent Splice Strand
Scp2-RA 198..749 17..570 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:54 Download gff for BO13975.complete
Subject Subject Range Query Range Percent Splice Strand
Scp2-RA 201..752 17..570 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:54 Download gff for BO13975.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16578990..16579047 17..74 100   Minus
3R 16575072..16575394 248..570 99 <- Minus
3R 16576923..16577042 128..247 100 <- Minus
3R 16577321..16577373 75..127 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:52 Download gff for BO13975.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12400794..12401116 248..570 99 <- Minus
arm_3R 12402645..12402764 128..247 100 <- Minus
arm_3R 12403043..12403095 75..127 100 <- Minus
arm_3R 12404712..12404769 17..74 100   Minus

BO13975.5prime Sequence

512 bp (471 high quality bases) assembled on 2006-05-08

> BO13975.5prime
GAAGTTATCAGTCGACATGTCGATCTCCGATTTCCGCAAAAAGAAGCTGC
TTTTTCTGTTCAATGTGTTCTTTGATGTGAACCAAAGCGGCGAAATCGAC
GTTAAGGACTTCGAGCTGGCCATCGAGCGCGTTTGCCAACTGCGCGGCTG
GCAGAAGGACACGCCGAAGAACAAGGAGACCTACGACCTGATGATGGAAA
TCTGGACTGGCCTGCGCTCCAAGGCCGACAAGGACAACGATGGACAGGTC
AGCGTGGACGAGTGGTGCAACATGTGGGACGCCTATGCCAAGGATCCCAG
CAGCGTGATGGACTGGCAGAATGCCTACATGAACTTCATGTTCGACCTGG
AGGATGCCTCGCACGATGGAGGCATCGATGTGACCGAATTCACGCTGGTC
TGCTCCAGCTATGGCCTGGAGAAGACCGAGTGTGAGGAAGCCTTTGCGAA
GATGTCTCAGGGGCAGAGCGAGGTCACCCGGGAGCAGTTCGCCGCCTTGG
GGAAGGAGTACT

BO13975.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14904-PA 555 Scp2-RA 1..496 17..512 2455 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
Scp2-RA 1283 CG14904-RA 201..696 17..512 2465 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16575130..16575397 512..245 1325 99.6 Minus
3R 32079331 3R 16576921..16577044 249..126 620 100 Minus
3R 32079331 3R 16578990..16579047 74..17 290 100 Minus
3R 32079331 3R 16577321..16577374 127..74 270 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:02:00 has no hits.

BO13975.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:28 Download gff for BO13975.5prime
Subject Subject Range Query Range Percent Splice Strand
Scp2-PA 1..496 17..512 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:07:45 Download gff for BO13975.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14904-PA 1..496 17..512 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:35:04 Download gff for BO13975.5prime
Subject Subject Range Query Range Percent Splice Strand
Scp2-RA 196..696 9..512 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:05:10 Download gff for BO13975.5prime
Subject Subject Range Query Range Percent Splice Strand
Scp2-RA 196..696 9..512 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:05:10 Download gff for BO13975.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16575130..16575394 248..512 99 <- Minus
3R 16576923..16577042 128..247 100 <- Minus
3R 16577321..16577373 75..127 100 <- Minus
3R 16578990..16579052 9..74 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:35:04 Download gff for BO13975.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12400852..12401116 248..512 99 <- Minus
arm_3R 12402645..12402764 128..247 100 <- Minus
arm_3R 12403043..12403095 75..127 100 <- Minus
arm_3R 12404712..12404774 9..74 93   Minus

BO13975.pep Sequence

Translation from 16 to 586

> BO13975.pep
MSISDFRKKKLLFLFNVFFDVNQSGEIDVKDFELAIERVCQLRGWQKDTP
KNKETYDLMMEIWTGLRSKADKDNDGQVSVDEWCNMWDAYAKDPSSVMDW
QNAYMNFMFDLEDASHDGGIDVTEFTLVCSSYGLEKTECEEAFAKMSQGQ
SEVTREQFAALWKEYFAAEDVNAPGNYIFGKTSFASFLDH

BO13975.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
Scp2-PA 184 CG14904-PA 1..184 1..184 990 100 Plus