Clone BO13985 Report

Search the DGRC for BO13985

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:139
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG5934-RA
Protein status:BO13985.pep: validated full length
Sequenced Size:439

Clone Sequence Records

BO13985.5prime Sequence

437 bp (436 high quality bases) assembled on 2006-05-08

> BO13985.5prime
GAAGTTATCAGTCGACATGTCCCTGTTAAACAATGACGACAGCATTCCCA
ACATGGACGAGGATCCACAGGTGGTCATTCCGGACGACGAGCCACCGGCG
ACGGGACGAATGCCCAGTGGGAGGTCCATGGACTCGTTGCGTTCATCGTT
CACCAACCGCAGTTCCACGCCAGATTCATCGCACAATTCGCTGGAGGCCA
TGGAAATGGCCCAGGACGATCGGGAGGAGAAGGCCCGCCTCATCACACAG
GTCCTGGAGCTGCAGAACACCCTGGACGACCTGTCGCAACGCGTCGATTC
CGTCAAGGAGGAAAATCTGAAGCTGCGCTCCGAGAACCAGGTGCTCGGCC
AGTACATCGAGAACCTGATGTCGGCCTCATCGGTGTTCCAGTCCACCAGT
CCCAGTGCGGCCAAAAAGAAGGCAAGCTTTCTAGACC

BO13985.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5934-PA 408 CG5934-RA 1..405 17..421 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5934-RA 784 CG5934-RA 126..531 16..421 2030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27273962..27274312 71..421 1755 100 Plus
3R 32079331 3R 27273830..27273885 16..71 280 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:43:06 has no hits.

BO13985.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:41 Download gff for BO13985.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5934-PA 1..408 17..425 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:03 Download gff for BO13985.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5934-PA 1..408 17..425 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:59 Download gff for BO13985.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5934-RA 122..541 9..433 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:01:50 Download gff for BO13985.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5934-RA 122..541 9..433 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:01:50 Download gff for BO13985.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27273826..27273885 9..71 95 -> Plus
3R 27273963..27274322 72..433 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:59 Download gff for BO13985.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23099548..23099607 9..71 95 -> Plus
arm_3R 23099685..23100044 72..433 98   Plus

BO13985.complete Sequence

439 bp assembled on 2006-10-11

GenBank Submission: FJ632986

> BO13985.complete
GAAGTTATCAGTCGACATGTCCCTGTTAAACAATGACGACAGCATTCCCA
ACATGGACGAGGATCCACAGGTGGTCATTCCGGACGACGAGCCACCGGCG
ACGGGACGAATGCCCAGTGGGAGGTCCATGGACTCGTTGCGTTCATCGTT
CACCAACCGCAGTTCCACGCCAGATTCATCGCACAATTCGCTGGAGGCCA
TGGAAATGGCCCAGGACGATCGGGAGGAGAAGGCCCGCCTCATCACACAG
GTCCTGGAGCTGCAGAACACCCTGGACGACCTGTCGCAACGCGTCGATTC
CGTCAAGGAGGAAAATCTGAAGCTGCGCTCCGAGAACCAGGTGCTCGGCC
AGTACATCGAGAACCTGATGTCGGCCTCATCGGTGTTCCAGTCCACCAGT
CCCAGTGCGGCCAAAAAGAAGGCAAGCTTTCTAGACCAT

BO13985.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5934-RA 408 CG5934-PA 1..405 17..421 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5934-RA 784 CG5934-RA 126..531 16..421 2030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27273962..27274312 71..421 1755 100 Plus
3R 32079331 3R 27273830..27273885 16..71 280 100 Plus
Blast to na_te.dros performed on 2014-11-27 17:04:29 has no hits.

BO13985.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:31 Download gff for BO13985.complete
Subject Subject Range Query Range Percent Splice Strand
CG5934-RA 1..408 17..425 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:04 Download gff for BO13985.complete
Subject Subject Range Query Range Percent Splice Strand
CG5934-RA 123..542 9..433 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:50 Download gff for BO13985.complete
Subject Subject Range Query Range Percent Splice Strand
CG5934-RA 127..531 17..423 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:31 Download gff for BO13985.complete
Subject Subject Range Query Range Percent Splice Strand
CG5934-RA 123..542 9..433 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:02 Download gff for BO13985.complete
Subject Subject Range Query Range Percent Splice Strand
CG5934-RA 127..531 17..423 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:02 Download gff for BO13985.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27273831..27273885 17..71 100 -> Plus
3R 27273963..27274312 72..423 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:50 Download gff for BO13985.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23099553..23099607 17..71 100 -> Plus
arm_3R 23099685..23100034 72..423 99   Plus

BO13985.pep Sequence

Translation from 16 to 439

> BO13985.pep
MSLLNNDDSIPNMDEDPQVVIPDDEPPATGRMPSGRSMDSLRSSFTNRSS
TPDSSHNSLEAMEMAQDDREEKARLITQVLELQNTLDDLSQRVDSVKEEN
LKLRSENQVLGQYIENLMSASSVFQSTSPSAAKKKASFLDH

BO13985.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5934-PA 135 CG5934-PA 1..135 1..135 671 100 Plus