Clone Sequence Records
BO13985.5prime Sequence
437 bp (436 high quality bases) assembled on 2006-05-08
> BO13985.5prime
GAAGTTATCAGTCGACATGTCCCTGTTAAACAATGACGACAGCATTCCCA
ACATGGACGAGGATCCACAGGTGGTCATTCCGGACGACGAGCCACCGGCG
ACGGGACGAATGCCCAGTGGGAGGTCCATGGACTCGTTGCGTTCATCGTT
CACCAACCGCAGTTCCACGCCAGATTCATCGCACAATTCGCTGGAGGCCA
TGGAAATGGCCCAGGACGATCGGGAGGAGAAGGCCCGCCTCATCACACAG
GTCCTGGAGCTGCAGAACACCCTGGACGACCTGTCGCAACGCGTCGATTC
CGTCAAGGAGGAAAATCTGAAGCTGCGCTCCGAGAACCAGGTGCTCGGCC
AGTACATCGAGAACCTGATGTCGGCCTCATCGGTGTTCCAGTCCACCAGT
CCCAGTGCGGCCAAAAAGAAGGCAAGCTTTCTAGACC
BO13985.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5934-PA | 408 | CG5934-RA | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5934-RA | 784 | CG5934-RA | 126..531 | 16..421 | 2030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:43:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27273962..27274312 | 71..421 | 1755 | 100 | Plus |
3R | 32079331 | 3R | 27273830..27273885 | 16..71 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:43:06 has no hits.
BO13985.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:41 Download gff for
BO13985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-PA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:03 Download gff for
BO13985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-PA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:59 Download gff for
BO13985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-RA | 122..541 | 9..433 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:01:50 Download gff for
BO13985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-RA | 122..541 | 9..433 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:01:50 Download gff for
BO13985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27273826..27273885 | 9..71 | 95 | -> | Plus |
3R | 27273963..27274322 | 72..433 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:59 Download gff for
BO13985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23099548..23099607 | 9..71 | 95 | -> | Plus |
arm_3R | 23099685..23100044 | 72..433 | 98 | | Plus |
BO13985.complete Sequence
439 bp assembled on 2006-10-11
GenBank Submission: FJ632986
> BO13985.complete
GAAGTTATCAGTCGACATGTCCCTGTTAAACAATGACGACAGCATTCCCA
ACATGGACGAGGATCCACAGGTGGTCATTCCGGACGACGAGCCACCGGCG
ACGGGACGAATGCCCAGTGGGAGGTCCATGGACTCGTTGCGTTCATCGTT
CACCAACCGCAGTTCCACGCCAGATTCATCGCACAATTCGCTGGAGGCCA
TGGAAATGGCCCAGGACGATCGGGAGGAGAAGGCCCGCCTCATCACACAG
GTCCTGGAGCTGCAGAACACCCTGGACGACCTGTCGCAACGCGTCGATTC
CGTCAAGGAGGAAAATCTGAAGCTGCGCTCCGAGAACCAGGTGCTCGGCC
AGTACATCGAGAACCTGATGTCGGCCTCATCGGTGTTCCAGTCCACCAGT
CCCAGTGCGGCCAAAAAGAAGGCAAGCTTTCTAGACCAT
BO13985.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5934-RA | 408 | CG5934-PA | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5934-RA | 784 | CG5934-RA | 126..531 | 16..421 | 2030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27273962..27274312 | 71..421 | 1755 | 100 | Plus |
3R | 32079331 | 3R | 27273830..27273885 | 16..71 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:04:29 has no hits.
BO13985.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:31 Download gff for
BO13985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-RA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:04 Download gff for
BO13985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-RA | 123..542 | 9..433 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:50 Download gff for
BO13985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-RA | 127..531 | 17..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:31 Download gff for
BO13985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-RA | 123..542 | 9..433 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:02 Download gff for
BO13985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-RA | 127..531 | 17..423 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:02 Download gff for
BO13985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27273831..27273885 | 17..71 | 100 | -> | Plus |
3R | 27273963..27274312 | 72..423 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:50 Download gff for
BO13985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23099553..23099607 | 17..71 | 100 | -> | Plus |
arm_3R | 23099685..23100034 | 72..423 | 99 | | Plus |
BO13985.pep Sequence
Translation from 16 to 439
> BO13985.pep
MSLLNNDDSIPNMDEDPQVVIPDDEPPATGRMPSGRSMDSLRSSFTNRSS
TPDSSHNSLEAMEMAQDDREEKARLITQVLELQNTLDDLSQRVDSVKEEN
LKLRSENQVLGQYIENLMSASSVFQSTSPSAAKKKASFLDH
BO13985.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5934-PA | 135 | CG5934-PA | 1..135 | 1..135 | 671 | 100 | Plus |