Clone BO13988 Report

Search the DGRC for BO13988

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:139
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG4607-RA
Protein status:BO13988.pep: Imported from assembly
Sequenced Size:1609

Clone Sequence Records

BO13988.5prime Sequence

465 bp (411 high quality bases) assembled on 2006-05-08

> BO13988.5prime
GAAGTTATCAGTCGACATGAAGGGCCAGCAGGAGGAGCAGCTGGTGCCGC
CGCCGGCCTACAAGCCCACAGTTGTCGCCAAGGACACGACAAAGGACTCC
CACGCGAAGGAGAAGCCCCTCGGCGAGGGTCGACTGGCTGTGCTGCGACA
GGAACTGATGGTCTTCCTGGGCAACAGCGGCGTTCTCGGCTCCGGAATGG
TGGTCAGCATGCCGGCAGTTACTCTCAATCAGCTGCACGACGAAACACAG
CCATTTTGGCTCAACAAGGACGAGTCGAGTTGGTTTGCCTCCATCCAGAA
CATGGCGTGTCCTTTGGGTGGACTTCTGGTCAGCTACTTCCTGGAAAGGA
TTGGCCGCAAACACACCATCCTGCTGACCAATTTGAAAGGACTGATTGGG
TGGATCCTGCTGGTTAACCATTTCATGCACTCCGATCGCGACATGATCTA
ACATCAAATGCTGTT

BO13988.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4607-PA 1578 CG4607-RA 1..398 17..414 1915 99.2 Plus
CG4607-PB 1578 CG4607-RB 1..398 17..414 1915 99.2 Plus
CG4607-PA 1578 CG4607-RA 405..449 421..465 175 95.5 Plus
CG4607-PB 1578 CG4607-RB 405..449 421..465 175 95.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4607-RB 2080 CG4607-RB 18..466 17..465 2125 98.4 Plus
CG4607-RA 2603 CG4607-RA 541..989 17..465 2125 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7069953..7070223 17..287 1355 100 Plus
X 23542271 X 7070429..7070607 287..465 760 95 Plus
Blast to na_te.dros performed on 2015-02-11 11:41:32 has no hits.

BO13988.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:42 Download gff for BO13988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4607-PA 1..449 17..465 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:05 Download gff for BO13988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4607-PB 1..449 17..465 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:48 Download gff for BO13988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4607-RA 532..989 8..465 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:55:46 Download gff for BO13988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4607-RA 532..989 8..465 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:55:46 Download gff for BO13988.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7069944..7070223 8..287 98 -> Plus
X 7070430..7070607 288..465 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:48 Download gff for BO13988.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6963977..6964256 8..287 98 -> Plus
arm_X 6964463..6964640 288..465 96   Plus

BO13988.complete Sequence

1609 bp assembled on 2010-06-24

GenBank Submission: KX798310

> BO13988.complete
GAAGTTATCAGTCGACATGAAGGGCCAGCAGGAGGAGCAGCTGGTGCCGC
CGCCGGCCTACAAGCCCACAGTTGTCGCCAAGGACACGACAAAGGACTCC
CACGCGAAGGAGAAGCCCCTCGGCGAGGGTCGACTGGCTGTGCTGCGACA
GGAACTGATGGTCTTCCTGGGCAACAGCGGCGTTCTCGGCTCCGGAATGG
TGGTCAGCATGCCGGCAGTTACTCTCAATCAGCTGCACGACGAAACACAG
CCATTTTGGCTCAACAAGGACGAGTCGAGTTGGTTTGCCTCCATCCAGAA
CATGGCGTGTCCTTTGGGTGGACTTCTGGTCAGCTACTTCCTGGACAGGA
TTGGCCGCAAACACACCATCCTGCTGACCAATTTGATAGGACTGATTGGC
TGGATCCTGCTGGTAACCAGTTTCATGCACTCCGATCGCGACATGATCTA
CTATCAAATGCTGTTGGGTCGTTGTTTTGGCGGTATCATGATCGGCATGT
TCGTATCGCCAGTGGGTGTCTACTCCGCCGAGATTAGTTTACCCAAGATA
CGCGGTCGCCTGATCCTGGGCACCTCGCTGGGCTTGGCCAGCGGCATTCT
GTTGATGTACTGCCTCGGCTACTTCATTCGTCACAACATCCAGCTGATCT
TCGGCATCAGTTGCTGCTACCAACTGGCGGCCACACTGCTCGTCTTTCCC
ATGCCGGAATCGCCCAGCTGGCTGCTCACCCGAGGAAAGGAGGAGCGGGC
CAGGAAATCCCTCAGATACTTCCGCGGACTGCCGAAAAAAGAGGTGGACT
ACGTACCGGAATTCGAGGCGGAACTGGCGCACATGAAGGAGTTGGCAGAT
GCGAGCAACACCACCGCCGCCGGCGAATCCCTCAGCCAGATGATCCATCG
TCCGGAGGTCTACAAGCCCGTCCTGATGATGACCACGTTCTTTGGATTCC
AACAGGCGTGCGGTGTGGTGGTGATCATTGTCTATGCCGTCCAAATTGCC
CAACAGGCGGGAGTTACCATCGATCCCGTGCTGGTGGCCGTAATGCTCGG
CGTGGCAAGGATAATCACTACGCTATTCATGAGCGGCATCTTTGAGAAGT
GGGGCCGCAAGCCGTCTGGAATCTTCTCGGCCACCGGAATGGGCGCCTGC
ATGCTGCTCCTGGCTGGTGGTAACTGGTTTCCGGACACACTGGGCACCTT
GCACTGGCTACCGGTGGCCTGCATTGTCGCCCACATAGTATTCTCCACGA
TGGGCATGCTGACGCTGCCCTTTTTCATGATCTCCGAGGTTTTCCCGCAG
CGGGCGAGAGGCAGTGCCTCCGGGATAGCCATCTTCTTTGGCATGATTCT
GGCCTTCATAATGCTGAAGATATACCCGAATATGGAGGCCGCTTTGGGCA
CAGCCAATCTATTTGCCTTCTATGCGGGAATATCCTTCCTTGCGGCCGCC
TTCATCGGCGTCTTTGTCCCGGAGACGAGGGGCAGGACTCTCGAGGAACT
GGAGGAGCGCTGGCAGACTGGCAAGTTCTCACGCCGCCTCACAATTGTCA
ATCTGAAGGATGTGGAGCTGCACGAAGTGTTCCTAAAGAAAGCAAGCTTT
CTAGACCAT

BO13988.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4607-RB 1578 CG4607-PB 1..1575 17..1591 7860 99.9 Plus
CG4607-RA 1578 CG4607-PA 1..1575 17..1591 7860 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4607-RB 2080 CG4607-RB 18..1592 17..1591 7860 99.9 Plus
CG4607-RA 2603 CG4607-RA 541..2115 17..1591 7860 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7071400..7072201 790..1591 3995 99.9 Plus
X 23542271 X 7070429..7070933 287..791 2525 100 Plus
X 23542271 X 7069953..7070223 17..287 1355 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:43:50 has no hits.

BO13988.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 14:15:31 Download gff for BO13988.complete
Subject Subject Range Query Range Percent Splice Strand
CG4607-RB 18..1592 17..1593 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:44 Download gff for BO13988.complete
Subject Subject Range Query Range Percent Splice Strand
CG4607-RA 541..2115 17..1593 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:02:39 Download gff for BO13988.complete
Subject Subject Range Query Range Percent Splice Strand
CG4607-RA 541..2115 17..1593 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:02:39 Download gff for BO13988.complete
Subject Subject Range Query Range Percent Splice Strand
X 7069953..7070223 17..287 100 -> Plus
X 7070430..7070933 288..791 100 -> Plus
X 7071402..7072201 792..1593 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:44 Download gff for BO13988.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6963986..6964256 17..287 100 -> Plus
arm_X 6964463..6964966 288..791 100 -> Plus
arm_X 6965435..6966234 792..1593 99   Plus

BO13988.pep Sequence

Translation from 16 to 1609

> BO13988.pep
MKGQQEEQLVPPPAYKPTVVAKDTTKDSHAKEKPLGEGRLAVLRQELMVF
LGNSGVLGSGMVVSMPAVTLNQLHDETQPFWLNKDESSWFASIQNMACPL
GGLLVSYFLDRIGRKHTILLTNLIGLIGWILLVTSFMHSDRDMIYYQMLL
GRCFGGIMIGMFVSPVGVYSAEISLPKIRGRLILGTSLGLASGILLMYCL
GYFIRHNIQLIFGISCCYQLAATLLVFPMPESPSWLLTRGKEERARKSLR
YFRGLPKKEVDYVPEFEAELAHMKELADASNTTAAGESLSQMIHRPEVYK
PVLMMTTFFGFQQACGVVVIIVYAVQIAQQAGVTIDPVLVAVMLGVARII
TTLFMSGIFEKWGRKPSGIFSATGMGACMLLLAGGNWFPDTLGTLHWLPV
ACIVAHIVFSTMGMLTLPFFMISEVFPQRARGSASGIAIFFGMILAFIML
KIYPNMEAALGTANLFAFYAGISFLAAAFIGVFVPETRGRTLEELEERWQ
TGKFSRRLTIVNLKDVELHEVFLKKASFLDH

BO13988.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4607-PB 525 CG4607-PB 1..525 1..525 2705 100 Plus
CG4607-PA 525 CG4607-PA 1..525 1..525 2705 100 Plus
CG8249-PC 521 CG8249-PC 27..518 27..525 1109 44.9 Plus
CG8249-PB 521 CG8249-PB 27..518 27..525 1109 44.9 Plus
CG8249-PA 521 CG8249-PA 27..518 27..525 1109 44.9 Plus