Clone Sequence Records
BO13988.5prime Sequence
465 bp (411 high quality bases) assembled on 2006-05-08
> BO13988.5prime
GAAGTTATCAGTCGACATGAAGGGCCAGCAGGAGGAGCAGCTGGTGCCGC
CGCCGGCCTACAAGCCCACAGTTGTCGCCAAGGACACGACAAAGGACTCC
CACGCGAAGGAGAAGCCCCTCGGCGAGGGTCGACTGGCTGTGCTGCGACA
GGAACTGATGGTCTTCCTGGGCAACAGCGGCGTTCTCGGCTCCGGAATGG
TGGTCAGCATGCCGGCAGTTACTCTCAATCAGCTGCACGACGAAACACAG
CCATTTTGGCTCAACAAGGACGAGTCGAGTTGGTTTGCCTCCATCCAGAA
CATGGCGTGTCCTTTGGGTGGACTTCTGGTCAGCTACTTCCTGGAAAGGA
TTGGCCGCAAACACACCATCCTGCTGACCAATTTGAAAGGACTGATTGGG
TGGATCCTGCTGGTTAACCATTTCATGCACTCCGATCGCGACATGATCTA
ACATCAAATGCTGTT
BO13988.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4607-PA | 1578 | CG4607-RA | 1..398 | 17..414 | 1915 | 99.2 | Plus |
CG4607-PB | 1578 | CG4607-RB | 1..398 | 17..414 | 1915 | 99.2 | Plus |
CG4607-PA | 1578 | CG4607-RA | 405..449 | 421..465 | 175 | 95.5 | Plus |
CG4607-PB | 1578 | CG4607-RB | 405..449 | 421..465 | 175 | 95.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4607-RB | 2080 | CG4607-RB | 18..466 | 17..465 | 2125 | 98.4 | Plus |
CG4607-RA | 2603 | CG4607-RA | 541..989 | 17..465 | 2125 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7069953..7070223 | 17..287 | 1355 | 100 | Plus |
X | 23542271 | X | 7070429..7070607 | 287..465 | 760 | 95 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:41:32 has no hits.
BO13988.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:42 Download gff for
BO13988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4607-PA | 1..449 | 17..465 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:05 Download gff for
BO13988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4607-PB | 1..449 | 17..465 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:48 Download gff for
BO13988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4607-RA | 532..989 | 8..465 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:55:46 Download gff for
BO13988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4607-RA | 532..989 | 8..465 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:55:46 Download gff for
BO13988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7069944..7070223 | 8..287 | 98 | -> | Plus |
X | 7070430..7070607 | 288..465 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:48 Download gff for
BO13988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6963977..6964256 | 8..287 | 98 | -> | Plus |
arm_X | 6964463..6964640 | 288..465 | 96 | | Plus |
BO13988.complete Sequence
1609 bp assembled on 2010-06-24
GenBank Submission: KX798310
> BO13988.complete
GAAGTTATCAGTCGACATGAAGGGCCAGCAGGAGGAGCAGCTGGTGCCGC
CGCCGGCCTACAAGCCCACAGTTGTCGCCAAGGACACGACAAAGGACTCC
CACGCGAAGGAGAAGCCCCTCGGCGAGGGTCGACTGGCTGTGCTGCGACA
GGAACTGATGGTCTTCCTGGGCAACAGCGGCGTTCTCGGCTCCGGAATGG
TGGTCAGCATGCCGGCAGTTACTCTCAATCAGCTGCACGACGAAACACAG
CCATTTTGGCTCAACAAGGACGAGTCGAGTTGGTTTGCCTCCATCCAGAA
CATGGCGTGTCCTTTGGGTGGACTTCTGGTCAGCTACTTCCTGGACAGGA
TTGGCCGCAAACACACCATCCTGCTGACCAATTTGATAGGACTGATTGGC
TGGATCCTGCTGGTAACCAGTTTCATGCACTCCGATCGCGACATGATCTA
CTATCAAATGCTGTTGGGTCGTTGTTTTGGCGGTATCATGATCGGCATGT
TCGTATCGCCAGTGGGTGTCTACTCCGCCGAGATTAGTTTACCCAAGATA
CGCGGTCGCCTGATCCTGGGCACCTCGCTGGGCTTGGCCAGCGGCATTCT
GTTGATGTACTGCCTCGGCTACTTCATTCGTCACAACATCCAGCTGATCT
TCGGCATCAGTTGCTGCTACCAACTGGCGGCCACACTGCTCGTCTTTCCC
ATGCCGGAATCGCCCAGCTGGCTGCTCACCCGAGGAAAGGAGGAGCGGGC
CAGGAAATCCCTCAGATACTTCCGCGGACTGCCGAAAAAAGAGGTGGACT
ACGTACCGGAATTCGAGGCGGAACTGGCGCACATGAAGGAGTTGGCAGAT
GCGAGCAACACCACCGCCGCCGGCGAATCCCTCAGCCAGATGATCCATCG
TCCGGAGGTCTACAAGCCCGTCCTGATGATGACCACGTTCTTTGGATTCC
AACAGGCGTGCGGTGTGGTGGTGATCATTGTCTATGCCGTCCAAATTGCC
CAACAGGCGGGAGTTACCATCGATCCCGTGCTGGTGGCCGTAATGCTCGG
CGTGGCAAGGATAATCACTACGCTATTCATGAGCGGCATCTTTGAGAAGT
GGGGCCGCAAGCCGTCTGGAATCTTCTCGGCCACCGGAATGGGCGCCTGC
ATGCTGCTCCTGGCTGGTGGTAACTGGTTTCCGGACACACTGGGCACCTT
GCACTGGCTACCGGTGGCCTGCATTGTCGCCCACATAGTATTCTCCACGA
TGGGCATGCTGACGCTGCCCTTTTTCATGATCTCCGAGGTTTTCCCGCAG
CGGGCGAGAGGCAGTGCCTCCGGGATAGCCATCTTCTTTGGCATGATTCT
GGCCTTCATAATGCTGAAGATATACCCGAATATGGAGGCCGCTTTGGGCA
CAGCCAATCTATTTGCCTTCTATGCGGGAATATCCTTCCTTGCGGCCGCC
TTCATCGGCGTCTTTGTCCCGGAGACGAGGGGCAGGACTCTCGAGGAACT
GGAGGAGCGCTGGCAGACTGGCAAGTTCTCACGCCGCCTCACAATTGTCA
ATCTGAAGGATGTGGAGCTGCACGAAGTGTTCCTAAAGAAAGCAAGCTTT
CTAGACCAT
BO13988.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4607-RB | 1578 | CG4607-PB | 1..1575 | 17..1591 | 7860 | 99.9 | Plus |
CG4607-RA | 1578 | CG4607-PA | 1..1575 | 17..1591 | 7860 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4607-RB | 2080 | CG4607-RB | 18..1592 | 17..1591 | 7860 | 99.9 | Plus |
CG4607-RA | 2603 | CG4607-RA | 541..2115 | 17..1591 | 7860 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7071400..7072201 | 790..1591 | 3995 | 99.9 | Plus |
X | 23542271 | X | 7070429..7070933 | 287..791 | 2525 | 100 | Plus |
X | 23542271 | X | 7069953..7070223 | 17..287 | 1355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:43:50 has no hits.
BO13988.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 14:15:31 Download gff for
BO13988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4607-RB | 18..1592 | 17..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:44 Download gff for
BO13988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4607-RA | 541..2115 | 17..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:02:39 Download gff for
BO13988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4607-RA | 541..2115 | 17..1593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:02:39 Download gff for
BO13988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7069953..7070223 | 17..287 | 100 | -> | Plus |
X | 7070430..7070933 | 288..791 | 100 | -> | Plus |
X | 7071402..7072201 | 792..1593 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:44 Download gff for
BO13988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6963986..6964256 | 17..287 | 100 | -> | Plus |
arm_X | 6964463..6964966 | 288..791 | 100 | -> | Plus |
arm_X | 6965435..6966234 | 792..1593 | 99 | | Plus |
BO13988.pep Sequence
Translation from 16 to 1609
> BO13988.pep
MKGQQEEQLVPPPAYKPTVVAKDTTKDSHAKEKPLGEGRLAVLRQELMVF
LGNSGVLGSGMVVSMPAVTLNQLHDETQPFWLNKDESSWFASIQNMACPL
GGLLVSYFLDRIGRKHTILLTNLIGLIGWILLVTSFMHSDRDMIYYQMLL
GRCFGGIMIGMFVSPVGVYSAEISLPKIRGRLILGTSLGLASGILLMYCL
GYFIRHNIQLIFGISCCYQLAATLLVFPMPESPSWLLTRGKEERARKSLR
YFRGLPKKEVDYVPEFEAELAHMKELADASNTTAAGESLSQMIHRPEVYK
PVLMMTTFFGFQQACGVVVIIVYAVQIAQQAGVTIDPVLVAVMLGVARII
TTLFMSGIFEKWGRKPSGIFSATGMGACMLLLAGGNWFPDTLGTLHWLPV
ACIVAHIVFSTMGMLTLPFFMISEVFPQRARGSASGIAIFFGMILAFIML
KIYPNMEAALGTANLFAFYAGISFLAAAFIGVFVPETRGRTLEELEERWQ
TGKFSRRLTIVNLKDVELHEVFLKKASFLDH
BO13988.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4607-PB | 525 | CG4607-PB | 1..525 | 1..525 | 2705 | 100 | Plus |
CG4607-PA | 525 | CG4607-PA | 1..525 | 1..525 | 2705 | 100 | Plus |
CG8249-PC | 521 | CG8249-PC | 27..518 | 27..525 | 1109 | 44.9 | Plus |
CG8249-PB | 521 | CG8249-PB | 27..518 | 27..525 | 1109 | 44.9 | Plus |
CG8249-PA | 521 | CG8249-PA | 27..518 | 27..525 | 1109 | 44.9 | Plus |