Clone BO14001 Report

Search the DGRC for BO14001

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptAcp65Aa-RA
Protein status:BO14001.pep: validated full length
Sequenced Size:349

Clone Sequence Records

BO14001.5prime Sequence

347 bp (346 high quality bases) assembled on 2006-05-29

> BO14001.5prime
GAAGTTATCAGTCGACATGATGAAATTGATGCTAGTCGTTGGCTCGATAG
CCCTTCTCCTGGCCCTGGCCAGTGCCCGGCCGCAAAATGATGTGGAAGTT
CTTGAGTACGAATCGGAGAACACCGGCCTCGGCGGCTACAAGTTCAGCTA
CAAACTGAGCGATGGCACCAGTCGAACAGAGGAGGGCGTGGTCAACAACG
CGGGCACCGACAACGAATCCATATCCATTCGGGGATCCGTCACCTGGGTG
GCTCCCGATGGCCAAACCTACACCATTAACTTTGTGGCCGACGAGAACGG
TTTTCAGCCGGAGGGTGCCCATCTGCCCAAGGCAAGCTTTCTAGACC

BO14001.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10297-PA 318 Acp65Aa-RA 1..315 17..331 1575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
Acp65Aa-RA 615 CG10297-RA 65..381 15..331 1585 100 Plus
Cpr65Av-RA 642 CG32405-RA 348..440 236..328 195 80.6 Plus
Lcp65Ac-RA 505 CG6956-RA 330..403 257..330 190 83.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6152284..6152587 331..28 1520 100 Minus
3L 28110227 3L 6139425..6139517 328..236 195 80.6 Minus
3L 28110227 3L 6143799..6143872 256..329 190 83.8 Plus
3L 28110227 3L 6145218..6145291 257..330 190 83.8 Plus
Blast to na_te.dros performed on 2015-02-12 19:59:00 has no hits.

BO14001.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:49 Download gff for BO14001.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10297-PA 1..318 17..332 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:14 Download gff for BO14001.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10297-PA 1..318 17..332 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:12:27 Download gff for BO14001.5prime
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 62..381 12..331 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:23:57 Download gff for BO14001.5prime
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 62..381 12..331 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:23:57 Download gff for BO14001.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6152284..6152586 29..331 100 <- Minus
3L 6152668..6152684 12..28 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:12:27 Download gff for BO14001.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6145384..6145686 29..331 100 <- Minus
arm_3L 6145768..6145784 12..28 94   Minus

BO14001.3prime Sequence

347 bp (346 high quality bases) assembled on 2006-05-29

> BO14001.3prime
ATGGTCTAGAAAGCTTGCCTTGGGCAGATGGGCACCCTCCGGCTGAAAAC
CGTTCTCGTCGGCCACAAAGTTAATGGTGTAGGTTTGGCCATCGGGAGCC
ACCCAGGTGACGGATCCCCGAATGGATATGGATTCGTTGTCGGTGCCCGC
GTTGTTGACCACGCCCTCCTCTGTTCGACTGGTGCCATCGCTCAGTTTGT
AGCTGAACTTGTAGCCGCCGAGGCCGGTGTTCTCCGATTCGTACTCAAGA
ACTTCCACATCATTTTGCGGCCGGGCACTGGCCAGGGCCAGGAGAAGGGC
TATCGAGCCAACGACTAGCATCAATTTCATCATGTCGACTGATAACT

BO14001.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10297-PA 318 Acp65Aa-RA 1..315 333..19 1575 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
Acp65Aa-RA 615 CG10297-RA 65..381 335..19 1585 100 Minus
Cpr65Av-RA 642 CG32405-RA 348..440 114..22 195 80.6 Minus
Lcp65Ac-RA 505 CG6956-RA 330..403 93..20 190 83.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6152284..6152587 19..322 1520 100 Plus
3L 28110227 3L 6139425..6139517 22..114 195 80.6 Plus
3L 28110227 3L 6145218..6145291 93..20 190 83.8 Minus
3L 28110227 3L 6143799..6143872 94..21 190 83.8 Minus
Blast to na_te.dros performed on 2015-02-08 13:26:42 has no hits.

BO14001.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:48 Download gff for BO14001.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10297-PA 1..318 18..333 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:12 Download gff for BO14001.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10297-PA 1..318 18..333 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:52:36 Download gff for BO14001.3prime
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 62..381 19..338 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:55:46 Download gff for BO14001.3prime
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 62..381 19..338 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:55:46 Download gff for BO14001.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6152284..6152586 19..321 100 <- Plus
3L 6152668..6152684 322..338 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:52:36 Download gff for BO14001.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6145384..6145686 19..321 100 <- Plus
arm_3L 6145768..6145784 322..338 94   Plus

BO14001.complete Sequence

349 bp assembled on 2006-10-11

GenBank Submission: FJ632987

> BO14001.complete
GAAGTTATCAGTCGACATGATGAAATTGATGCTAGTCGTTGGCTCGATAG
CCCTTCTCCTGGCCCTGGCCAGTGCCCGGCCGCAAAATGATGTGGAAGTT
CTTGAGTACGAATCGGAGAACACCGGCCTCGGCGGCTACAAGTTCAGCTA
CAAACTGAGCGATGGCACCAGTCGAACAGAGGAGGGCGTGGTCAACAACG
CGGGCACCGACAACGAATCCATATCCATTCGGGGATCCGTCACCTGGGTG
GCTCCCGATGGCCAAACCTACACCATTAACTTTGTGGCCGACGAGAACGG
TTTTCAGCCGGAGGGTGCCCATCTGCCCAAGGCAAGCTTTCTAGACCAT

BO14001.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Acp65Aa-RA 318 CG10297-PA 1..315 17..331 1575 100 Plus
Cpr65Av-RA 336 CG32405-PA 235..327 236..328 195 80.6 Plus
Lcp65Ac-RA 330 CG6956-PA 238..311 257..330 190 83.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Acp65Aa-RA 615 CG10297-RA 65..381 15..331 1585 100 Plus
Cpr65Av-RA 642 CG32405-RA 348..440 236..328 195 80.6 Plus
Lcp65Ac-RA 505 CG6956-RA 330..403 257..330 190 83.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6152284..6152587 331..28 1520 100 Minus
3L 28110227 3L 6139425..6139517 328..236 195 80.6 Minus
3L 28110227 3L 6143799..6143872 256..329 190 83.8 Plus
3L 28110227 3L 6145218..6145291 257..330 190 83.8 Plus
Blast to na_te.dros performed on 2014-11-27 15:44:46 has no hits.

BO14001.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:32 Download gff for BO14001.complete
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 1..318 17..332 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:28 Download gff for BO14001.complete
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 62..381 12..331 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:02 Download gff for BO14001.complete
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 67..381 17..333 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:32 Download gff for BO14001.complete
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 62..381 12..331 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:30 Download gff for BO14001.complete
Subject Subject Range Query Range Percent Splice Strand
Acp65Aa-RA 67..381 17..333 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:30 Download gff for BO14001.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6152282..6152591 21..333 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:02 Download gff for BO14001.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6145382..6145691 21..333 98   Minus

BO14001.pep Sequence

Translation from 16 to 349

> BO14001.pep
MMKLMLVVGSIALLLALASARPQNDVEVLEYESENTGLGGYKFSYKLSDG
TSRTEEGVVNNAGTDNESISIRGSVTWVAPDGQTYTINFVADENGFQPEG
AHLPKASFLDH

BO14001.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
Acp65Aa-PA 105 CG10297-PA 1..105 1..105 536 100 Plus
Cpr65Av-PA 111 CG32405-PA 8..109 5..104 293 52.4 Plus
Cpr65Ax1-PA 102 CG34270-PA 10..99 14..106 266 58.1 Plus
Cpr65Ax2-PB 102 CG18777-PB 10..99 14..106 266 58.1 Plus
Cpr65Ax2-PA 102 CG18777-PA 10..99 14..106 266 58.1 Plus