Clone Sequence Records
BO14001.5prime Sequence
347 bp (346 high quality bases) assembled on 2006-05-29
> BO14001.5prime
GAAGTTATCAGTCGACATGATGAAATTGATGCTAGTCGTTGGCTCGATAG
CCCTTCTCCTGGCCCTGGCCAGTGCCCGGCCGCAAAATGATGTGGAAGTT
CTTGAGTACGAATCGGAGAACACCGGCCTCGGCGGCTACAAGTTCAGCTA
CAAACTGAGCGATGGCACCAGTCGAACAGAGGAGGGCGTGGTCAACAACG
CGGGCACCGACAACGAATCCATATCCATTCGGGGATCCGTCACCTGGGTG
GCTCCCGATGGCCAAACCTACACCATTAACTTTGTGGCCGACGAGAACGG
TTTTCAGCCGGAGGGTGCCCATCTGCCCAAGGCAAGCTTTCTAGACC
BO14001.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10297-PA | 318 | Acp65Aa-RA | 1..315 | 17..331 | 1575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp65Aa-RA | 615 | CG10297-RA | 65..381 | 15..331 | 1585 | 100 | Plus |
Cpr65Av-RA | 642 | CG32405-RA | 348..440 | 236..328 | 195 | 80.6 | Plus |
Lcp65Ac-RA | 505 | CG6956-RA | 330..403 | 257..330 | 190 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6152284..6152587 | 331..28 | 1520 | 100 | Minus |
3L | 28110227 | 3L | 6139425..6139517 | 328..236 | 195 | 80.6 | Minus |
3L | 28110227 | 3L | 6143799..6143872 | 256..329 | 190 | 83.8 | Plus |
3L | 28110227 | 3L | 6145218..6145291 | 257..330 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:59:00 has no hits.
BO14001.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:49 Download gff for
BO14001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10297-PA | 1..318 | 17..332 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:14 Download gff for
BO14001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10297-PA | 1..318 | 17..332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:12:27 Download gff for
BO14001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 62..381 | 12..331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:23:57 Download gff for
BO14001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 62..381 | 12..331 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:23:57 Download gff for
BO14001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6152284..6152586 | 29..331 | 100 | <- | Minus |
3L | 6152668..6152684 | 12..28 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:12:27 Download gff for
BO14001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6145384..6145686 | 29..331 | 100 | <- | Minus |
arm_3L | 6145768..6145784 | 12..28 | 94 | | Minus |
BO14001.3prime Sequence
347 bp (346 high quality bases) assembled on 2006-05-29
> BO14001.3prime
ATGGTCTAGAAAGCTTGCCTTGGGCAGATGGGCACCCTCCGGCTGAAAAC
CGTTCTCGTCGGCCACAAAGTTAATGGTGTAGGTTTGGCCATCGGGAGCC
ACCCAGGTGACGGATCCCCGAATGGATATGGATTCGTTGTCGGTGCCCGC
GTTGTTGACCACGCCCTCCTCTGTTCGACTGGTGCCATCGCTCAGTTTGT
AGCTGAACTTGTAGCCGCCGAGGCCGGTGTTCTCCGATTCGTACTCAAGA
ACTTCCACATCATTTTGCGGCCGGGCACTGGCCAGGGCCAGGAGAAGGGC
TATCGAGCCAACGACTAGCATCAATTTCATCATGTCGACTGATAACT
BO14001.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10297-PA | 318 | Acp65Aa-RA | 1..315 | 333..19 | 1575 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp65Aa-RA | 615 | CG10297-RA | 65..381 | 335..19 | 1585 | 100 | Minus |
Cpr65Av-RA | 642 | CG32405-RA | 348..440 | 114..22 | 195 | 80.6 | Minus |
Lcp65Ac-RA | 505 | CG6956-RA | 330..403 | 93..20 | 190 | 83.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:26:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6152284..6152587 | 19..322 | 1520 | 100 | Plus |
3L | 28110227 | 3L | 6139425..6139517 | 22..114 | 195 | 80.6 | Plus |
3L | 28110227 | 3L | 6145218..6145291 | 93..20 | 190 | 83.8 | Minus |
3L | 28110227 | 3L | 6143799..6143872 | 94..21 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2015-02-08 13:26:42 has no hits.
BO14001.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:48 Download gff for
BO14001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10297-PA | 1..318 | 18..333 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:12 Download gff for
BO14001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10297-PA | 1..318 | 18..333 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:52:36 Download gff for
BO14001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 62..381 | 19..338 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:55:46 Download gff for
BO14001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 62..381 | 19..338 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:55:46 Download gff for
BO14001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6152284..6152586 | 19..321 | 100 | <- | Plus |
3L | 6152668..6152684 | 322..338 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:52:36 Download gff for
BO14001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6145384..6145686 | 19..321 | 100 | <- | Plus |
arm_3L | 6145768..6145784 | 322..338 | 94 | | Plus |
BO14001.complete Sequence
349 bp assembled on 2006-10-11
GenBank Submission: FJ632987
> BO14001.complete
GAAGTTATCAGTCGACATGATGAAATTGATGCTAGTCGTTGGCTCGATAG
CCCTTCTCCTGGCCCTGGCCAGTGCCCGGCCGCAAAATGATGTGGAAGTT
CTTGAGTACGAATCGGAGAACACCGGCCTCGGCGGCTACAAGTTCAGCTA
CAAACTGAGCGATGGCACCAGTCGAACAGAGGAGGGCGTGGTCAACAACG
CGGGCACCGACAACGAATCCATATCCATTCGGGGATCCGTCACCTGGGTG
GCTCCCGATGGCCAAACCTACACCATTAACTTTGTGGCCGACGAGAACGG
TTTTCAGCCGGAGGGTGCCCATCTGCCCAAGGCAAGCTTTCTAGACCAT
BO14001.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp65Aa-RA | 318 | CG10297-PA | 1..315 | 17..331 | 1575 | 100 | Plus |
Cpr65Av-RA | 336 | CG32405-PA | 235..327 | 236..328 | 195 | 80.6 | Plus |
Lcp65Ac-RA | 330 | CG6956-PA | 238..311 | 257..330 | 190 | 83.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp65Aa-RA | 615 | CG10297-RA | 65..381 | 15..331 | 1585 | 100 | Plus |
Cpr65Av-RA | 642 | CG32405-RA | 348..440 | 236..328 | 195 | 80.6 | Plus |
Lcp65Ac-RA | 505 | CG6956-RA | 330..403 | 257..330 | 190 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6152284..6152587 | 331..28 | 1520 | 100 | Minus |
3L | 28110227 | 3L | 6139425..6139517 | 328..236 | 195 | 80.6 | Minus |
3L | 28110227 | 3L | 6143799..6143872 | 256..329 | 190 | 83.8 | Plus |
3L | 28110227 | 3L | 6145218..6145291 | 257..330 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:44:46 has no hits.
BO14001.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:32 Download gff for
BO14001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 1..318 | 17..332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:28 Download gff for
BO14001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 62..381 | 12..331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:02 Download gff for
BO14001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 67..381 | 17..333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:32 Download gff for
BO14001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 62..381 | 12..331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:30 Download gff for
BO14001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp65Aa-RA | 67..381 | 17..333 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:30 Download gff for
BO14001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6152282..6152591 | 21..333 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:02 Download gff for
BO14001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6145382..6145691 | 21..333 | 98 | | Minus |
BO14001.pep Sequence
Translation from 16 to 349
> BO14001.pep
MMKLMLVVGSIALLLALASARPQNDVEVLEYESENTGLGGYKFSYKLSDG
TSRTEEGVVNNAGTDNESISIRGSVTWVAPDGQTYTINFVADENGFQPEG
AHLPKASFLDH
BO14001.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp65Aa-PA | 105 | CG10297-PA | 1..105 | 1..105 | 536 | 100 | Plus |
Cpr65Av-PA | 111 | CG32405-PA | 8..109 | 5..104 | 293 | 52.4 | Plus |
Cpr65Ax1-PA | 102 | CG34270-PA | 10..99 | 14..106 | 266 | 58.1 | Plus |
Cpr65Ax2-PB | 102 | CG18777-PB | 10..99 | 14..106 | 266 | 58.1 | Plus |
Cpr65Ax2-PA | 102 | CG18777-PA | 10..99 | 14..106 | 266 | 58.1 | Plus |