Clone Sequence Records
BO14002.3prime Sequence
566 bp (565 high quality bases) assembled on 2006-05-29
> BO14002.3prime
ATGGTCTAGAAAGCTTGCACGCCGACGTCGCGTGCCCGCCACTCGGGAAT
AGGACTCGATGCAGGTCAGCAGGCTGAGCAGCTGTTGCTTCAGCGTCGAG
GGTATGTGGTATCCGTGGATAATCCTCCGTGGCGCGTTGCTCGTCCGGAT
CAGCCAGCGGGCGACCAGCCAGAGGCAGTTTTCGCGCAGCGATCTCATCG
GAAAGTGGATCAGCACTTCGCTGCGTACGTCAACCAGCTGATCCGGACTC
TGCTGGCTCTTGGGTACCCGCACCCGAATCGGCTGAAAGATCCTCTGCGA
GCGTACGTGCATCCGTTCGCCCGTGTAGTAATCCCGGAACAGCCAGCTGT
GTGTGGTGAACGTGTTCACCCGCACCTCCTCGAAGGGCTTGAGGGTAAGG
TACATGTTCTCCCGCTCCCGCTCGCACACCCAGTACAGATCCAGGGTGCG
ATAGGTGGTGTTTGCAAACAGCACGTACACCTCCACCTTTCCCTGATCAG
CGCCCACCAGCTGCTGGCCGTCGCGGTTGTTCTGCGCTATTTGGAGCGCC
ATGTCGACTGATAACT
BO14002.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13221-PA | 537 | Vhl-RA | 1..534 | 552..19 | 2670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:01:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vhl-RB | 946 | CG13221-RB | 154..687 | 552..19 | 2670 | 100 | Minus |
| Vhl-RA | 1309 | CG13221-RA | 154..687 | 552..19 | 2670 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11279878..11280411 | 552..19 | 2670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:01:35 has no hits.
BO14002.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:50 Download gff for
BO14002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-PA | 1..537 | 18..552 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:15 Download gff for
BO14002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13221-PA | 1..537 | 18..552 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:46:18 Download gff for
BO14002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 151..687 | 19..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:27 Download gff for
BO14002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 151..687 | 19..555 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:27 Download gff for
BO14002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11279875..11280411 | 19..555 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:46:18 Download gff for
BO14002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7167380..7167916 | 19..555 | 99 | | Minus |
BO14002.5prime Sequence
566 bp (565 high quality bases) assembled on 2006-05-29
> BO14002.5prime
GAAGTTATCAGTCGACATGGCGCTCCAAATAGCGCAGAACAACCGCGACG
GCCAGCAGCTGGTGGGCGCTGATCAGGGAAAGGTGGAGGTGTACGTGCTG
TTTGCAAACACCACCTATCGCACCCTGGATCTGTACTGGGTGTGCGAGCG
GGAGCGGGAGAACATGTACCTTACCCTCAAGCCCTTCGAGGAGGTGCGGG
TGAACACGTTCACCACACACAGCTGGCTGTTCCGGGATTACTACACGGGC
GAACGGATGCACGTACGCTCGCAGAGGATCTTTCAGCCGATTCGGGTGCG
GGTACCCAAGAGCCAGCAGAGTCCGGATCAGCTGGTTGACGTACGCAGCG
AAGTGCTGATCCACTTTCCGATGAGATCGCTGCGCGAAAACTGCCTCTGG
CTGGTCGCCCGCTGGCTGATCCGGACGAGCAACGCGCCACGGAGGATTAT
CCACGGATACCACATACCCTCGACGCTGAAGCAACAGCTGCTCAGCCTGC
TGACCTGCATCGAGTCCTATTCCCGAGTGGCGGGCACGCGACGTCGGCGT
GCAAGCTTTCTAGACC
BO14002.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13221-PA | 537 | Vhl-RA | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vhl-RB | 946 | CG13221-RB | 154..687 | 17..550 | 2670 | 100 | Plus |
| Vhl-RA | 1309 | CG13221-RA | 154..687 | 17..550 | 2670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11279878..11280411 | 17..550 | 2670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:39:25 has no hits.
BO14002.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:51 Download gff for
BO14002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-PA | 1..537 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:17 Download gff for
BO14002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13221-PA | 1..537 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:48:12 Download gff for
BO14002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 151..687 | 14..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:19:36 Download gff for
BO14002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 151..687 | 14..550 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:19:36 Download gff for
BO14002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11279875..11280411 | 14..550 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:48:12 Download gff for
BO14002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7167380..7167916 | 14..550 | 99 | | Plus |
BO14002.complete Sequence
568 bp assembled on 2006-10-11
GenBank Submission: FJ632988
> BO14002.complete
GAAGTTATCAGTCGACATGGCGCTCCAAATAGCGCAGAACAACCGCGACG
GCCAGCAGCTGGTGGGCGCTGATCAGGGAAAGGTGGAGGTGTACGTGCTG
TTTGCAAACACCACCTATCGCACCCTGGATCTGTACTGGGTGTGCGAGCG
GGAGCGGGAGAACATGTACCTTACCCTCAAGCCCTTCGAGGAGGTGCGGG
TGAACACGTTCACCACACACAGCTGGCTGTTCCGGGATTACTACACGGGC
GAACGGATGCACGTACGCTCGCAGAGGATCTTTCAGCCGATTCGGGTGCG
GGTACCCAAGAGCCAGCAGAGTCCGGATCAGCTGGTTGACGTACGCAGCG
AAGTGCTGATCCACTTTCCGATGAGATCGCTGCGCGAAAACTGCCTCTGG
CTGGTCGCCCGCTGGCTGATCCGGACGAGCAACGCGCCACGGAGGATTAT
CCACGGATACCACATACCCTCGACGCTGAAGCAACAGCTGCTCAGCCTGC
TGACCTGCATCGAGTCCTATTCCCGAGTGGCGGGCACGCGACGTCGGCGT
GCAAGCTTTCTAGACCAT
BO14002.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vhl-RB | 537 | CG13221-PB | 1..534 | 17..550 | 2670 | 100 | Plus |
| Vhl-RA | 537 | CG13221-PA | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vhl-RB | 946 | CG13221-RB | 154..687 | 17..550 | 2670 | 100 | Plus |
| Vhl-RA | 1309 | CG13221-RA | 154..687 | 17..550 | 2670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11279878..11280411 | 17..550 | 2670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:39:22 has no hits.
BO14002.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:33 Download gff for
BO14002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 1..537 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:31 Download gff for
BO14002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 150..686 | 14..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:39 Download gff for
BO14002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 154..687 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:33 Download gff for
BO14002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 150..686 | 14..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:32 Download gff for
BO14002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 154..687 | 17..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:32 Download gff for
BO14002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11279878..11280411 | 17..552 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:39 Download gff for
BO14002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7167383..7167916 | 17..552 | 99 | | Plus |
BO14002.pep Sequence
Translation from 16 to 568
> BO14002.pep
MALQIAQNNRDGQQLVGADQGKVEVYVLFANTTYRTLDLYWVCERERENM
YLTLKPFEEVRVNTFTTHSWLFRDYYTGERMHVRSQRIFQPIRVRVPKSQ
QSPDQLVDVRSEVLIHFPMRSLRENCLWLVARWLIRTSNAPRRIIHGYHI
PSTLKQQLLSLLTCIESYSRVAGTRRRRASFLDH
BO14002.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vhl-PB | 178 | CG13221-PB | 1..178 | 1..178 | 935 | 100 | Plus |
| Vhl-PA | 178 | CG13221-PA | 1..178 | 1..178 | 935 | 100 | Plus |
