Clone BO14003 Report

Search the DGRC for BO14003

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG14419-RA
Protein status:BO14003.pep: validated full length
Sequenced Size:619

Clone Sequence Records

BO14003.3prime Sequence

435 bp (433 high quality bases) assembled on 2006-05-29

> BO14003.3prime
ATGGTCTAGAAAGCTTGCGTTCTTCTGCTTTTGGTTGTAGTTTTTCAAGG
CCTCGGCCAGTTCCGATAGTGCCGATTTCTGGGCCTTCTCCTGCTTGCGC
TCCTGCTGCTTCTTCAACTGCTTGCACAGTTTCTTCAACTGCTTGCGCTC
CTTCTTTGCCGATTTCTTCTCGCCACTGTCGTCCTCTTCGGACGAGGAAG
ATCCACCCCGCTTCTTCCGGCGGCTCAACTCGGCACATTGTTGCAGCAGC
TTGGCGGCCTCATCATCATCGGGCTTTGGAGTGGTGGTCGTAGTAGTGGT
TGTGGTGGTGCTCGGGGTGGTGCTGGGAGTGGTGCTGGGAGTGGTGCTGG
GAGTGGTGCTGGTGGTGGTGCTCGGGGTGGTGCTTGTGGTAGTCGTACTG
GCAGTTGTGGACTCTGACTTGGGCTTTTCCGTTGT

BO14003.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14419-PA 588 CG14419-RA 169..585 435..19 2085 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14419-RA 729 CG14419-RA 212..628 435..19 2085 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2885287..2885703 19..435 2085 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:08:36 has no hits.

BO14003.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:52 Download gff for BO14003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14419-PA 169..588 15..435 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:18 Download gff for BO14003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14419-PA 169..588 15..435 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:11:25 Download gff for BO14003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14419-RA 212..631 15..435 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:05:14 Download gff for BO14003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14419-RA 212..631 15..435 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:05:14 Download gff for BO14003.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2885284..2885703 15..435 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:11:25 Download gff for BO14003.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2779317..2779736 15..435 99   Plus

BO14003.5prime Sequence

617 bp (616 high quality bases) assembled on 2006-05-29

> BO14003.5prime
GAAGTTATCAGTCGACATGCGCGCTTCCATACTGTTTTTCGGCCTGCTGC
TGGTGGCCAGCTGCTCCACGATTTTGGCCAGGCCACAGGAGAGCACTACG
CCGAGCACCACCACCTCAACCACCACCACCACGACGACTCCGAAGCCTAA
AGAGTCGTCTACAACCACTACGACTACGACGACGACAACGGAAAAGCCCA
AGTCAGAGTCCACAACTGCCAGTACGACTACCACAAGCACCACCCCGAGC
ACCACCACCAGCACCACTCCCAGCACCACTCCCAGCACCACTCCCAGCAC
CACCCCGAGCACCACCACAACCACTACTACGACCACCACTCCAAAGCCCG
ATGATGATGAGGCCGCCAAGCTGCTGCAACAATGTGCCGAGTTGAGCCGC
CGGAAGAAGCGGGGTGGATCTTCCTCGTCCGAAGAGGACGACAGTGGCGA
GAAGAAATCGGCAAAGAAGGAGCGCAAGCAGTTGAAGAAACTGTGCAAGC
AGTTGAAGAAGCAGCAGGAGCGCAAGCAGGAGAAGGCCCAGAAATCGGCA
CTATCGGAACTGGCCGAGGCCTTGAAAAACTACAACCAAAAGCAGAAGAA
CGCAAGCTTTCTAGACC

BO14003.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14419-PA 588 CG14419-RA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14419-RA 729 CG14419-RA 44..628 17..601 2925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2885287..2885871 601..17 2925 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:05:59 has no hits.

BO14003.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:53 Download gff for BO14003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14419-PA 1..588 17..605 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:19 Download gff for BO14003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14419-PA 1..588 17..605 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:14:17 Download gff for BO14003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14419-RA 33..631 7..605 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:25:04 Download gff for BO14003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14419-RA 33..631 7..605 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:25:04 Download gff for BO14003.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2885284..2885882 7..605 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:14:17 Download gff for BO14003.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2779317..2779915 7..605 99   Minus

BO14003.complete Sequence

619 bp assembled on 2006-10-11

GenBank Submission: FJ632989

> BO14003.complete
GAAGTTATCAGTCGACATGCGCGCTTCCATACTGTTTTTCGGCCTGCTGC
TGGTGGCCAGCTGCTCCACGATTTTGGCCAGGCCACAGGAGAGCACTACG
CCGAGCACCACCACCTCAACCACCACCACCACGACGACTCCGAAGCCTAA
AGAGTCGTCTACAACCACTACGACTACGACGACGACAACGGAAAAGCCCA
AGTCAGAGTCCACAACTGCCAGTACGACTACCACAAGCACCACCCCGAGC
ACCACCACCAGCACCACTCCCAGCACCACTCCCAGCACCACTCCCAGCAC
CACCCCGAGCACCACCACAACCACTACTACGACCACCACTCCAAAGCCCG
ATGATGATGAGGCCGCCAAGCTGCTGCAACAATGTGCCGAGTTGAGCCGC
CGGAAGAAGCGGGGTGGATCTTCCTCGTCCGAAGAGGACGACAGTGGCGA
GAAGAAATCGGCAAAGAAGGAGCGCAAGCAGTTGAAGAAACTGTGCAAGC
AGTTGAAGAAGCAGCAGGAGCGCAAGCAGGAGAAGGCCCAGAAATCGGCA
CTATCGGAACTGGCCGAGGCCTTGAAAAACTACAACCAAAAGCAGAAGAA
CGCAAGCTTTCTAGACCAT

BO14003.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14419-RA 588 CG14419-PA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14419-RA 729 CG14419-RA 44..628 17..601 2925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2885287..2885871 601..17 2925 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:13:01 has no hits.

BO14003.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:34 Download gff for BO14003.complete
Subject Subject Range Query Range Percent Splice Strand
CG14419-RA 1..588 17..605 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:33 Download gff for BO14003.complete
Subject Subject Range Query Range Percent Splice Strand
CG14419-RA 30..628 7..605 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:38 Download gff for BO14003.complete
Subject Subject Range Query Range Percent Splice Strand
CG14419-RA 44..628 17..603 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:35 Download gff for BO14003.complete
Subject Subject Range Query Range Percent Splice Strand
CG14419-RA 30..628 7..605 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:37 Download gff for BO14003.complete
Subject Subject Range Query Range Percent Splice Strand
CG14419-RA 44..628 17..603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:37 Download gff for BO14003.complete
Subject Subject Range Query Range Percent Splice Strand
X 2885285..2885871 17..603 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:38 Download gff for BO14003.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2779318..2779904 17..603 99   Minus

BO14003.pep Sequence

Translation from 16 to 619

> BO14003.pep
MRASILFFGLLLVASCSTILARPQESTTPSTTTSTTTTTTTPKPKESSTT
TTTTTTTTEKPKSESTTASTTTTSTTPSTTTSTTPSTTPSTTPSTTPSTT
TTTTTTTTPKPDDDEAAKLLQQCAELSRRKKRGGSSSSEEDDSGEKKSAK
KERKQLKKLCKQLKKQQERKQEKAQKSALSELAEALKNYNQKQKNASFLD
H

BO14003.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14419-PA 195 CG14419-PA 1..195 1..195 971 100 Plus
Muc96D-PA 881 CG31439-PA 155..236 26..107 260 63.4 Plus
Muc96D-PA 881 CG31439-PA 323..406 28..111 259 61.9 Plus
Muc96D-PA 881 CG31439-PA 273..354 26..107 257 62.2 Plus
Muc96D-PA 881 CG31439-PA 205..285 28..108 256 63 Plus
Muc96D-PA 881 CG31439-PA 366..448 26..108 256 62.7 Plus
Muc96D-PA 881 CG31439-PA 444..530 26..108 255 60.9 Plus
CG34220-PA 726 CG34220-PA 86..168 26..108 254 62.7 Plus
CG34220-PA 726 CG34220-PA 90..176 26..108 254 60.9 Plus
Muc96D-PA 881 CG31439-PA 476..559 26..108 253 61.9 Plus
CG34220-PA 726 CG34220-PA 73..156 26..108 253 63.1 Plus
Muc96D-PA 881 CG31439-PA 167..254 17..108 252 59.1 Plus
Muc96D-PA 881 CG31439-PA 188..277 26..108 252 58.9 Plus
Muc96D-PA 881 CG31439-PA 285..372 17..108 252 59.1 Plus
Muc96D-PA 881 CG31439-PA 306..395 26..108 252 58.9 Plus
Muc96D-PA 881 CG31439-PA 564..646 26..108 252 61.4 Plus
Muc96D-PA 881 CG31439-PA 138..221 26..108 251 63.1 Plus
Muc96D-PA 881 CG31439-PA 339..421 26..108 250 60.2 Plus
Muc96D-PA 881 CG31439-PA 421..503 26..108 250 60.2 Plus
Muc96D-PA 881 CG31439-PA 486..585 17..108 250 55 Plus
Muc96D-PA 881 CG31439-PA 221..306 26..108 248 60.5 Plus
Muc96D-PA 881 CG31439-PA 405..485 28..108 248 60.5 Plus
Muc96D-PA 881 CG31439-PA 231..314 26..108 247 61.9 Plus
Muc96D-PA 881 CG31439-PA 256..339 26..108 247 61.9 Plus
Muc96D-PA 881 CG31439-PA 368..456 26..108 247 60.7 Plus
Muc96D-PA 881 CG31439-PA 452..534 26..108 247 60.2 Plus
Muc96D-PA 881 CG31439-PA 145..239 15..109 246 52.6 Plus
Muc96D-PA 881 CG31439-PA 248..335 26..108 246 59.1 Plus
Muc96D-PA 881 CG31439-PA 125..217 16..108 245 53.8 Plus
Muc96D-PA 881 CG31439-PA 263..357 15..109 245 52.6 Plus
Muc96D-PA 881 CG31439-PA 508..593 26..108 245 59.3 Plus
CG34220-PA 726 CG34220-PA 46..138 16..108 245 54.8 Plus
CG34220-PA 726 CG34220-PA 110..198 26..112 245 57.3 Plus
Muc96D-PA 881 CG31439-PA 180..262 26..108 244 59 Plus
Muc96D-PA 881 CG31439-PA 205..286 27..108 244 61 Plus
Muc96D-PA 881 CG31439-PA 298..380 26..108 244 59 Plus
Muc96D-PA 881 CG31439-PA 347..429 26..108 244 60.2 Plus
Muc96D-PA 881 CG31439-PA 427..511 26..109 244 61.2 Plus
Muc96D-PA 881 CG31439-PA 610..692 26..108 244 60.2 Plus
Muc96D-PA 881 CG31439-PA 613..695 26..108 244 60.2 Plus
Mur82C-PB 578 CG12586-PB 179..273 17..108 244 52.6 Plus
Muc96D-PA 881 CG31439-PA 341..425 26..108 243 60 Plus
Muc96D-PA 881 CG31439-PA 378..473 17..108 243 54.2 Plus
Muc96D-PA 881 CG31439-PA 414..507 15..108 243 54.3 Plus
Muc96D-PA 881 CG31439-PA 461..541 28..107 243 61.7 Plus
Muc96D-PA 881 CG31439-PA 505..601 17..111 243 53.6 Plus
Muc96D-PA 881 CG31439-PA 526..616 26..108 243 57.1 Plus
Muc96D-PA 881 CG31439-PA 561..650 17..108 243 57.4 Plus
Muc96D-PA 881 CG31439-PA 568..654 17..108 243 56.5 Plus
Muc96D-PA 881 CG31439-PA 625..719 17..111 243 53.7 Plus
Muc96D-PA 881 CG31439-PA 228..310 26..108 242 59 Plus
Muc96D-PA 881 CG31439-PA 473..555 26..108 242 59 Plus
Muc96D-PA 881 CG31439-PA 580..669 26..108 242 57.8 Plus
CG34220-PA 726 CG34220-PA 103..185 26..108 242 60.2 Plus
CG34220-PA 726 CG34220-PA 268..366 23..112 242 54.5 Plus
Hmu-PA 579 CG3373-PA 439..573 21..162 242 43.1 Plus
Muc96D-PA 881 CG31439-PA 170..266 15..111 241 51.5 Plus
Muc96D-PA 881 CG31439-PA 288..384 15..111 241 51.5 Plus
Muc96D-PA 881 CG31439-PA 595..688 17..108 241 55.8 Plus
Muc96D-PA 881 CG31439-PA 642..727 26..111 241 57 Plus
CG34220-PA 726 CG34220-PA 104..186 26..108 238 59 Plus
CG34220-PA 726 CG34220-PA 100..182 26..108 234 57.8 Plus
CG34220-PA 726 CG34220-PA 102..184 26..108 234 57.8 Plus
CG34220-PA 726 CG34220-PA 250..343 21..108 232 54.3 Plus
CG34220-PA 726 CG34220-PA 54..141 21..108 230 55.7 Plus
CG34220-PA 726 CG34220-PA 36..130 15..108 228 51.6 Plus
CG34220-PA 726 CG34220-PA 65..146 27..108 226 57.3 Plus
Mur82C-PB 578 CG12586-PB 216..308 26..108 224 53.8 Plus
Mur82C-PB 578 CG12586-PB 198..293 13..108 223 47.9 Plus
Mur82C-PB 578 CG12586-PB 222..313 17..108 223 52.1 Plus
CG34220-PA 726 CG34220-PA 33..118 23..108 219 53.5 Plus
CG34220-PA 726 CG34220-PA 499..648 23..156 218 38 Plus
Mur82C-PB 578 CG12586-PB 229..315 15..107 214 51.6 Plus
Mur82C-PB 578 CG12586-PB 199..282 27..109 211 55.8 Plus
CG34220-PA 726 CG34220-PA 127..201 26..111 204 55.8 Plus
CG34220-PA 726 CG34220-PA 529..629 16..112 202 47.7 Plus
CG34220-PA 726 CG34220-PA 430..574 23..108 201 38.6 Plus
CG34220-PA 726 CG34220-PA 302..396 26..111 199 45.3 Plus
CG34220-PA 726 CG34220-PA 129..214 26..111 197 47.7 Plus
CG34220-PA 726 CG34220-PA 298..382 26..111 193 50 Plus
Mur82C-PB 578 CG12586-PB 255..334 26..109 186 50 Plus
CG34220-PA 726 CG34220-PA 420..568 23..108 184 37.6 Plus
CG34220-PA 726 CG34220-PA 236..331 23..108 179 44.8 Plus
Mur82C-PB 578 CG12586-PB 188..258 34..109 178 55.3 Plus
Mur82C-PB 578 CG12586-PB 279..368 26..114 177 46.7 Plus
CG34220-PA 726 CG34220-PA 135..219 26..115 176 44.4 Plus
CG34220-PA 726 CG34220-PA 402..501 21..115 174 40 Plus
CG34220-PA 726 CG34220-PA 314..463 17..108 172 36 Plus
CG34220-PA 726 CG34220-PA 385..480 23..112 169 41.7 Plus
CG34220-PA 726 CG34220-PA 146..228 27..111 164 43.3 Plus
Mur82C-PB 578 CG12586-PB 166..254 29..109 159 43.8 Plus
Mur82C-PB 578 CG12586-PB 264..354 26..108 159 45.1 Plus