Clone Sequence Records
BO14004.5prime Sequence
371 bp (370 high quality bases) assembled on 2006-05-29
> BO14004.5prime
GAAGTTATCAGTCGACATGAAGGTATTCATTGTACTCTGCGCACTGGTGG
CCTGTGTTTCGGCCGGATTGGTCCGATCCTCGGGCTGGGGATCGAATCCT
TGGGGCGGCAGCAGCTCCGGATGGAATAGTGGCTGGGTTGCCCAGCAGCC
GCAAGTCATCAAGGTCATAAAGATCGGAGGAGGCGGCGGCTCCGGATGGG
GCGGAAACTCTGGATGGGGCGGTAACTCCGGATGGGGTAGCAACTCCGGA
TGGGGCGGCAACTCCGGATGGGGTGGAAACTCTGGTTGGAGCAGCGGCAA
CTCCGGATGGAACAGCAATGGATGGTCCAGTTCCAGCTCCAATAGTGGAT
GGTGGGCAAGCTTTCTAGACC
BO14004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12998-PA | 342 | CG12998-RA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12998-RB | 1121 | CG12998-RB | 315..653 | 17..355 | 1695 | 100 | Plus |
CG12998-RA | 612 | CG12998-RA | 99..437 | 17..355 | 1695 | 100 | Plus |
CG12998-RB | 1121 | CG12998-RB | 488..569 | 226..310 | 225 | 85.9 | Plus |
CG12998-RB | 1121 | CG12998-RB | 524..608 | 190..271 | 225 | 85.9 | Plus |
CG12998-RA | 612 | CG12998-RA | 272..353 | 226..310 | 225 | 85.9 | Plus |
CG12998-RA | 612 | CG12998-RA | 308..392 | 190..271 | 225 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:19:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17218981..17219319 | 17..355 | 1695 | 100 | Plus |
X | 23542271 | X | 17219154..17219235 | 226..310 | 195 | 84.7 | Plus |
X | 23542271 | X | 17219190..17219274 | 190..271 | 195 | 84.7 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:19:24 has no hits.
BO14004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:53 Download gff for
BO14004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-PA | 1..342 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:21 Download gff for
BO14004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-PA | 1..342 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:44:37 Download gff for
BO14004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-RA | 93..440 | 9..360 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:21:37 Download gff for
BO14004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-RA | 95..442 | 9..360 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:21:37 Download gff for
BO14004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17218977..17219324 | 9..360 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:44:37 Download gff for
BO14004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17113010..17113357 | 9..360 | 98 | | Plus |
BO14004.complete Sequence
373 bp assembled on 2006-10-11
GenBank Submission: FJ632990
> BO14004.complete
GAAGTTATCAGTCGACATGAAGGTATTCATTGTACTCTGCGCACTGGTGG
CCTGTGTTTCGGCCGGATTGGTCCGATCCTCGGGCTGGGGATCGAATCCT
TGGGGCGGCAGCAGCTCCGGATGGAATAGTGGCTGGGTTGCCCAGCAGCC
GCAAGTCATCAAGGTCATAAAGATCGGAGGAGGCGGCGGCTCCGGATGGG
GCGGAAACTCTGGATGGGGCGGTAACTCCGGATGGGGTAGCAACTCCGGA
TGGGGCGGCAACTCCGGATGGGGTGGAAACTCTGGTTGGAGCAGCGGCAA
CTCCGGATGGAACAGCAATGGATGGTCCAGTTCCAGCTCCAATAGTGGAT
GGTGGGCAAGCTTTCTAGACCAT
BO14004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12998-RB | 342 | CG12998-PB | 1..339 | 17..355 | 1695 | 100 | Plus |
CG12998-RA | 342 | CG12998-PA | 1..339 | 17..355 | 1695 | 100 | Plus |
CG12998-RB | 342 | CG12998-PB | 174..255 | 226..310 | 195 | 84.7 | Plus |
CG12998-RB | 342 | CG12998-PB | 210..294 | 190..271 | 195 | 84.7 | Plus |
CG12998-RA | 342 | CG12998-PA | 174..255 | 226..310 | 195 | 84.7 | Plus |
CG12998-RA | 342 | CG12998-PA | 210..294 | 190..271 | 195 | 84.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12998-RB | 1121 | CG12998-RB | 315..653 | 17..355 | 1695 | 100 | Plus |
CG12998-RA | 612 | CG12998-RA | 99..437 | 17..355 | 1695 | 100 | Plus |
CG12998-RB | 1121 | CG12998-RB | 488..569 | 226..310 | 195 | 84.7 | Plus |
CG12998-RB | 1121 | CG12998-RB | 524..608 | 190..271 | 195 | 84.7 | Plus |
CG12998-RA | 612 | CG12998-RA | 272..353 | 226..310 | 195 | 84.7 | Plus |
CG12998-RA | 612 | CG12998-RA | 308..392 | 190..271 | 195 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17218981..17219319 | 17..355 | 1695 | 100 | Plus |
X | 23542271 | X | 17219154..17219235 | 226..310 | 195 | 84.7 | Plus |
X | 23542271 | X | 17219190..17219274 | 190..271 | 195 | 84.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:46:21 has no hits.
BO14004.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:52 Download gff for
BO14004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-RA | 1..342 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:47 Download gff for
BO14004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-RA | 96..443 | 9..360 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:57 Download gff for
BO14004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-RA | 97..435 | 17..357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:52 Download gff for
BO14004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-RA | 96..443 | 9..360 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:31 Download gff for
BO14004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12998-RA | 99..437 | 17..357 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:31 Download gff for
BO14004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17218981..17219319 | 17..357 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:57 Download gff for
BO14004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17113014..17113352 | 17..357 | 99 | | Plus |
BO14004.pep Sequence
Translation from 16 to 373
> BO14004.pep
MKVFIVLCALVACVSAGLVRSSGWGSNPWGGSSSGWNSGWVAQQPQVIKV
IKIGGGGGSGWGGNSGWGGNSGWGSNSGWGGNSGWGGNSGWSSGNSGWNS
NGWSSSSSNSGWWASFLDH
BO14004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12998-PB | 113 | CG12998-PB | 1..113 | 1..113 | 660 | 100 | Plus |
CG12998-PA | 113 | CG12998-PA | 1..113 | 1..113 | 660 | 100 | Plus |
CG34327-PA | 220 | CG34327-PA | 15..131 | 7..109 | 182 | 40.5 | Plus |
CG13376-PB | 200 | CG13376-PB | 1..147 | 1..112 | 178 | 34.2 | Plus |
CG34227-PA | 104 | CG34227-PA | 54..102 | 55..113 | 177 | 50.8 | Plus |
CG34227-PA | 104 | CG34227-PA | 55..101 | 35..98 | 176 | 45.3 | Plus |
CG34327-PA | 220 | CG34327-PA | 57..176 | 21..115 | 173 | 39.4 | Plus |
CG34327-PA | 220 | CG34327-PA | 133..218 | 14..112 | 163 | 43.3 | Plus |
CG34327-PA | 220 | CG34327-PA | 53..185 | 22..115 | 161 | 36.8 | Plus |
CG34327-PA | 220 | CG34327-PA | 83..183 | 21..112 | 144 | 35 | Plus |