Clone BO14004 Report

Search the DGRC for BO14004

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG12998-RA
Protein status:BO14004.pep: validated full length
Sequenced Size:373

Clone Sequence Records

BO14004.5prime Sequence

371 bp (370 high quality bases) assembled on 2006-05-29

> BO14004.5prime
GAAGTTATCAGTCGACATGAAGGTATTCATTGTACTCTGCGCACTGGTGG
CCTGTGTTTCGGCCGGATTGGTCCGATCCTCGGGCTGGGGATCGAATCCT
TGGGGCGGCAGCAGCTCCGGATGGAATAGTGGCTGGGTTGCCCAGCAGCC
GCAAGTCATCAAGGTCATAAAGATCGGAGGAGGCGGCGGCTCCGGATGGG
GCGGAAACTCTGGATGGGGCGGTAACTCCGGATGGGGTAGCAACTCCGGA
TGGGGCGGCAACTCCGGATGGGGTGGAAACTCTGGTTGGAGCAGCGGCAA
CTCCGGATGGAACAGCAATGGATGGTCCAGTTCCAGCTCCAATAGTGGAT
GGTGGGCAAGCTTTCTAGACC

BO14004.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12998-PA 342 CG12998-RA 1..339 17..355 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12998-RB 1121 CG12998-RB 315..653 17..355 1695 100 Plus
CG12998-RA 612 CG12998-RA 99..437 17..355 1695 100 Plus
CG12998-RB 1121 CG12998-RB 488..569 226..310 225 85.9 Plus
CG12998-RB 1121 CG12998-RB 524..608 190..271 225 85.9 Plus
CG12998-RA 612 CG12998-RA 272..353 226..310 225 85.9 Plus
CG12998-RA 612 CG12998-RA 308..392 190..271 225 85.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17218981..17219319 17..355 1695 100 Plus
X 23542271 X 17219154..17219235 226..310 195 84.7 Plus
X 23542271 X 17219190..17219274 190..271 195 84.7 Plus
Blast to na_te.dros performed on 2015-02-04 02:19:24 has no hits.

BO14004.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:53 Download gff for BO14004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12998-PA 1..342 17..359 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:21 Download gff for BO14004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12998-PA 1..342 17..359 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:44:37 Download gff for BO14004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12998-RA 93..440 9..360 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:21:37 Download gff for BO14004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12998-RA 95..442 9..360 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:21:37 Download gff for BO14004.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17218977..17219324 9..360 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:44:37 Download gff for BO14004.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17113010..17113357 9..360 98   Plus

BO14004.complete Sequence

373 bp assembled on 2006-10-11

GenBank Submission: FJ632990

> BO14004.complete
GAAGTTATCAGTCGACATGAAGGTATTCATTGTACTCTGCGCACTGGTGG
CCTGTGTTTCGGCCGGATTGGTCCGATCCTCGGGCTGGGGATCGAATCCT
TGGGGCGGCAGCAGCTCCGGATGGAATAGTGGCTGGGTTGCCCAGCAGCC
GCAAGTCATCAAGGTCATAAAGATCGGAGGAGGCGGCGGCTCCGGATGGG
GCGGAAACTCTGGATGGGGCGGTAACTCCGGATGGGGTAGCAACTCCGGA
TGGGGCGGCAACTCCGGATGGGGTGGAAACTCTGGTTGGAGCAGCGGCAA
CTCCGGATGGAACAGCAATGGATGGTCCAGTTCCAGCTCCAATAGTGGAT
GGTGGGCAAGCTTTCTAGACCAT

BO14004.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12998-RB 342 CG12998-PB 1..339 17..355 1695 100 Plus
CG12998-RA 342 CG12998-PA 1..339 17..355 1695 100 Plus
CG12998-RB 342 CG12998-PB 174..255 226..310 195 84.7 Plus
CG12998-RB 342 CG12998-PB 210..294 190..271 195 84.7 Plus
CG12998-RA 342 CG12998-PA 174..255 226..310 195 84.7 Plus
CG12998-RA 342 CG12998-PA 210..294 190..271 195 84.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12998-RB 1121 CG12998-RB 315..653 17..355 1695 100 Plus
CG12998-RA 612 CG12998-RA 99..437 17..355 1695 100 Plus
CG12998-RB 1121 CG12998-RB 488..569 226..310 195 84.7 Plus
CG12998-RB 1121 CG12998-RB 524..608 190..271 195 84.7 Plus
CG12998-RA 612 CG12998-RA 272..353 226..310 195 84.7 Plus
CG12998-RA 612 CG12998-RA 308..392 190..271 195 84.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17218981..17219319 17..355 1695 100 Plus
X 23542271 X 17219154..17219235 226..310 195 84.7 Plus
X 23542271 X 17219190..17219274 190..271 195 84.7 Plus
Blast to na_te.dros performed on 2014-11-27 16:46:21 has no hits.

BO14004.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:52 Download gff for BO14004.complete
Subject Subject Range Query Range Percent Splice Strand
CG12998-RA 1..342 17..359 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:47 Download gff for BO14004.complete
Subject Subject Range Query Range Percent Splice Strand
CG12998-RA 96..443 9..360 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:57 Download gff for BO14004.complete
Subject Subject Range Query Range Percent Splice Strand
CG12998-RA 97..435 17..357 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:52 Download gff for BO14004.complete
Subject Subject Range Query Range Percent Splice Strand
CG12998-RA 96..443 9..360 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:31 Download gff for BO14004.complete
Subject Subject Range Query Range Percent Splice Strand
CG12998-RA 99..437 17..357 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:31 Download gff for BO14004.complete
Subject Subject Range Query Range Percent Splice Strand
X 17218981..17219319 17..357 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:57 Download gff for BO14004.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17113014..17113352 17..357 99   Plus

BO14004.pep Sequence

Translation from 16 to 373

> BO14004.pep
MKVFIVLCALVACVSAGLVRSSGWGSNPWGGSSSGWNSGWVAQQPQVIKV
IKIGGGGGSGWGGNSGWGGNSGWGSNSGWGGNSGWGGNSGWSSGNSGWNS
NGWSSSSSNSGWWASFLDH

BO14004.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12998-PB 113 CG12998-PB 1..113 1..113 660 100 Plus
CG12998-PA 113 CG12998-PA 1..113 1..113 660 100 Plus
CG34327-PA 220 CG34327-PA 15..131 7..109 182 40.5 Plus
CG13376-PB 200 CG13376-PB 1..147 1..112 178 34.2 Plus
CG34227-PA 104 CG34227-PA 54..102 55..113 177 50.8 Plus
CG34227-PA 104 CG34227-PA 55..101 35..98 176 45.3 Plus
CG34327-PA 220 CG34327-PA 57..176 21..115 173 39.4 Plus
CG34327-PA 220 CG34327-PA 133..218 14..112 163 43.3 Plus
CG34327-PA 220 CG34327-PA 53..185 22..115 161 36.8 Plus
CG34327-PA 220 CG34327-PA 83..183 21..112 144 35 Plus