Clone BO14006 Report

Search the DGRC for BO14006

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG11099-RA
Protein status:BO14006.pep: Imported from assembly
Sequenced Size:1168

Clone Sequence Records

BO14006.3prime Sequence

620 bp (487 high quality bases) assembled on 2006-05-29

> BO14006.3prime
ATGGTCTAGAAAGCTTGCTTTGTTGCTGGCCATGTGTTCTTCCTCATCAT
CGTCGTCATCATCTGAGACTCGCCAAGCCAATTGGTAGTACTTCTTATCA
TTGCTAGTCAACCAAAGGAGACCACATCGGTTGGTGCAGAAGTTGCAGGT
GAAGAGCTGTTTGGATGTACTGCCACGCCTTTTCACAACCATGAAGTAGT
ACGAGGTATAGAGACATCTGGAGCAGGTGGAGTTCGTGCAGCGGGCGATG
GGTCCATTGTTGATGTGGGAACTGATGTACGGTTCTGGGAGCAGACGATG
CATGGCTACATTCTCATATACGGGCGTGAAGCGGTTCAGCGTCTGCAGAG
CGTGCAGACAGTCATCGTACAGCGAAACGCGGTTCTCCACCGACGGAACC
GGAAATACTGTGCGGGTGCCAACCGGAAGAAGCAACCTGGTGCTGGTCTC
CCAGCTCGCGGACCCAAAACAAACCCTTGCGATGCACGGCGACGGGAGTA
TTCCTCTGGCGGTTGTCGTAAAAGTTTTGATAAAACCTCTCATAGACCAT
GGGTATGTAATTTGATAGCGGTGTTGTGGAAAATGCCCACATGGTTCATG
AACTTTGGAGAGAGCTGCCG

BO14006.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11099-PA 1137 CG11099-RA 702..1134 451..19 2140 99.7 Minus
CG11099-PA 1137 CG11099-RA 595..703 559..451 520 99 Minus
CG11099-PA 1137 CG11099-RA 550..593 605..562 170 95.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11099-RB 2173 CG11099-RB 793..1391 620..19 2860 98.7 Minus
CG11099-RA 2319 CG11099-RA 939..1537 620..19 2860 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20237693..20238005 491..178 1505 99.4 Minus
2R 25286936 2R 20238257..20238418 180..19 810 100 Minus
2R 25286936 2R 20237310..20237436 620..492 485 95.3 Minus
Blast to na_te.dros performed on 2015-02-03 06:45:42 has no hits.

BO14006.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:54 Download gff for BO14006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11099-PA 536..1137 18..620 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:23 Download gff for BO14006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11099-PA 536..1137 18..620 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:25:01 Download gff for BO14006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11099-RA 939..1544 12..620 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:40:43 Download gff for BO14006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11099-RA 939..1544 12..620 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:40:43 Download gff for BO14006.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20237310..20237436 492..620 95 -> Minus
2R 20237693..20238004 179..491 99 -> Minus
2R 20238259..20238425 12..178 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:25:01 Download gff for BO14006.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16124815..16124941 492..620 95 -> Minus
arm_2R 16125198..16125509 179..491 99 -> Minus
arm_2R 16125764..16125930 12..178 98   Minus

BO14006.5prime Sequence

660 bp (637 high quality bases) assembled on 2006-05-29

> BO14006.5prime
GAAGTTATCACCCGACATGAACAAAACGATTCTGCACTGGAGCTACCTGA
ATTTCAAGGATGTCCCGATGGATCTGTTCCTCTACGAGGATCTCGAGGAA
GTCTACCTCAAGGAGAACTTCATCTCGGTGATACCCAAATGGCTGCTGAA
CATCACCACACTGAAGTTTATTCATTTGGCTGGCAATAATCTGAGTGAAC
TGCCGGTGGACATCTATATGCTGGAGAATCTGGAGTTCCTGGACGTATCC
AACAATGAGCTCAAGGAGCTGCCCCCCACACTGGGTCTCCTGTTGAATCT
CCAGCAGCTGAATGTGTCGGGGAATCAGCTCACCGAACTACCAGTGGAGC
TAAGTGGTTTGCGCAATCTGGAGCACCTGAACATTGGCAAGAACCAATTT
CGACGCCTGCCGGTTCAGCTGAGCGAGTGCGTCCGCCTCAACGAGCTGAA
TGTGAGCGACAACGAGGCGCTTGTCCACATCCCCGAGCGCATCTCCAACC
TGCCCATGCTGCAGTCCCTCGCCGCAGATCGTTGTGCGCTCGTCTACTTG
CCGGCAGCTCTCTCCAAGTTCATGAACCATGTGCGCATTCTTCCACAACA
CCGCTATCAACTACATACCCATGGTCTATGAGAGGTTCTATCAAAACTTT
TACCACAACC

BO14006.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11099-PA 1137 CG11099-RA 1..572 17..588 2860 100 Plus
CG11099-PA 1137 CG11099-RA 572..643 589..660 335 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11099-RB 2173 CG11099-RB 258..900 17..660 3180 99.7 Plus
CG11099-RA 2319 CG11099-RA 404..1046 17..660 3180 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20236638..20236968 17..347 1655 100 Plus
2R 25286936 2R 20237026..20237211 347..532 930 100 Plus
2R 25286936 2R 20237289..20237417 531..660 585 98.5 Plus
Blast to na_te.dros performed on 2015-02-11 16:14:04 has no hits.

BO14006.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:55 Download gff for BO14006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11099-PA 1..643 17..660 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:24 Download gff for BO14006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11099-PA 1..643 17..660 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:00:34 Download gff for BO14006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11099-RA 404..1046 17..660 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:48:37 Download gff for BO14006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11099-RA 404..1046 17..660 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:48:37 Download gff for BO14006.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20236638..20236968 17..347 100 -> Plus
2R 20237027..20237209 348..530 100 -> Plus
2R 20237289..20237417 531..660 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:00:34 Download gff for BO14006.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16124143..16124473 17..347 100 -> Plus
arm_2R 16124532..16124714 348..530 100 -> Plus
arm_2R 16124794..16124922 531..660 98   Plus

BO14006.complete Sequence

1168 bp assembled on 2008-08-14

GenBank Submission: FJ638723

> BO14006.complete
GAAGTTATCACCCGACATGAACAAAACGATTCTGCACTGGAGCTACCTGA
ATTTCAAGGATGTCCCGATGGATCTGTTCCTCTACGAGGATCTCGAGGAA
GTCTACCTCAAGGAGAACTTCATCTCGGTGATACCCAAATGGCTGCTGAA
CATCACCACACTGAAGTTTATTCATTTGGCTGGCAATAATCTGAGTGAAC
TGCCGGTGGACATCTATATGCTGGAGAATCTGGAGTTCCTGGACGTATCC
AACAATGAGCTCAAGGAGCTGCCCCCCACACTGGGTCTCCTGTTGAATCT
CCAGCAGCTGAATGTGTCGGGGAATCAGCTCACCGAACTACCAGTGGAGC
TAAGTGGTTTGCGCAATCTGGAGCACCTGAACATTGGCAAGAACCAATTT
CGACGCCTGCCGGTTCAGCTGAGCGAGTGCGTCCGCCTCAACGAGCTGAA
TGTGAGCGACAACGAGGCGCTTGTCCACATCCCCGAGCGCATCTCCAACC
TGCCCATGCTGCAGTCCCTCGCCGCAGATCGTTGTGCGCTCGTCTACTTG
CCGGCAGCTCTCTCCAAGTTCATGAACCATGTGCGCATCTTCCACAACAC
CGCTATCAACTACATACCCATGGTCTATGAGAGGTTCTATCAAAACTTTT
ACGACAACCGCCAGAGGAATACTCCCGTCGCCGTGCATCGCAAGGGTTTG
TTTTGGGTCCGCGAGCTGGAGACCAGCACCAGGTTGCTTCTTCCGGTTGG
CACCCGCACAGTATTTCCGGTTCCGTCGGTGGAGAACCGCGTTTCGCTCT
ACGATGACTGTCTGCACGCTCTGCAGACGCTGAACCGCTTCACGCCCGTA
TATGAGAATGTAGCCATGCATCGTCTGCTCCCAGAACCGTACATCAGTTC
CCACATCAACAATGGACCCATCGCCCGCTGCACGAACTCCACCTGCTCCA
GATGTCTCTATACCTCGTACTACTTCATGGTTGTGAAAAGGCGTGGCAGT
ACATCCAAACAGCTCTTCACCTGCAACTTCTGCACCAACCGATGTGGTCT
CCTTTGGTTGACTAGCAATGATAAGAAGTACTACCAATTGGCTTGGCGAG
TCTCAGATGATGACGACGATGATGAGGAAGAACACATGGCCAGCAACAAA
GCAAGCTTTCTAGACCAT

BO14006.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11099-RB 1137 CG11099-PB 1..1134 17..1150 5670 100 Plus
CG11099-RA 1137 CG11099-PA 1..1134 17..1150 5670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11099-RB 2173 CG11099-RB 258..1391 17..1150 5670 100 Plus
CG11099-RA 2319 CG11099-RA 404..1537 17..1150 5670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20236638..20236968 17..347 1655 100 Plus
2R 25286936 2R 20237693..20238005 679..991 1565 100 Plus
2R 25286936 2R 20237026..20237211 347..532 930 100 Plus
2R 25286936 2R 20238257..20238418 989..1150 810 100 Plus
2R 25286936 2R 20237289..20237436 531..678 740 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:34:59 has no hits.

BO14006.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:00 Download gff for BO14006.complete
Subject Subject Range Query Range Percent Splice Strand
CG11099-RA 404..1544 17..1157 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:13 Download gff for BO14006.complete
Subject Subject Range Query Range Percent Splice Strand
CG11099-RA 404..1537 17..1152 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:36 Download gff for BO14006.complete
Subject Subject Range Query Range Percent Splice Strand
CG11099-RA 404..1537 17..1152 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:51 Download gff for BO14006.complete
Subject Subject Range Query Range Percent Splice Strand
CG11099-RA 404..1537 17..1152 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:51 Download gff for BO14006.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20237693..20238004 679..990 100 -> Plus
2R 20238259..20238418 991..1152 98   Plus
2R 20236638..20236968 17..347 100 -> Plus
2R 20237027..20237209 348..530 100 -> Plus
2R 20237289..20237436 531..678 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:13 Download gff for BO14006.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16124143..16124473 17..347 100 -> Plus
arm_2R 16124532..16124714 348..530 100 -> Plus
arm_2R 16124794..16124941 531..678 100 -> Plus
arm_2R 16125198..16125509 679..990 100 -> Plus
arm_2R 16125764..16125923 991..1152 98   Plus

BO14006.pep Sequence

Translation from 16 to 1168

> BO14006.pep
MNKTILHWSYLNFKDVPMDLFLYEDLEEVYLKENFISVIPKWLLNITTLK
FIHLAGNNLSELPVDIYMLENLEFLDVSNNELKELPPTLGLLLNLQQLNV
SGNQLTELPVELSGLRNLEHLNIGKNQFRRLPVQLSECVRLNELNVSDNE
ALVHIPERISNLPMLQSLAADRCALVYLPAALSKFMNHVRIFHNTAINYI
PMVYERFYQNFYDNRQRNTPVAVHRKGLFWVRELETSTRLLLPVGTRTVF
PVPSVENRVSLYDDCLHALQTLNRFTPVYENVAMHRLLPEPYISSHINNG
PIARCTNSTCSRCLYTSYYFMVVKRRGSTSKQLFTCNFCTNRCGLLWLTS
NDKKYYQLAWRVSDDDDDDEEEHMASNKASFLDH

BO14006.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11099-PB 378 CG11099-PB 1..378 1..378 2002 100 Plus
CG11099-PA 378 CG11099-PA 1..378 1..378 2002 100 Plus
scrib-PC 1247 CG43398-PC 130..375 2..243 257 29 Plus
scrib-PI 1711 CG43398-PI 130..375 2..243 257 29 Plus
scrib-PP 1729 CG43398-PP 130..375 2..243 257 29 Plus
scrib-PC 1247 CG43398-PC 22..262 10..245 219 29.1 Plus
scrib-PI 1711 CG43398-PI 22..262 10..245 219 29.1 Plus
scrib-PC 1247 CG43398-PC 97..265 15..184 204 32.4 Plus
scrib-PI 1711 CG43398-PI 97..265 15..184 204 32.4 Plus
scrib-PC 1247 CG43398-PC 121..291 16..187 203 32 Plus
scrib-PI 1711 CG43398-PI 121..291 16..187 203 32 Plus
scrib-PC 1247 CG43398-PC 290..396 24..131 168 38.9 Plus
scrib-PI 1711 CG43398-PI 290..396 24..131 168 38.9 Plus