Clone Sequence Records
BO14006.3prime Sequence
620 bp (487 high quality bases) assembled on 2006-05-29
> BO14006.3prime
ATGGTCTAGAAAGCTTGCTTTGTTGCTGGCCATGTGTTCTTCCTCATCAT
CGTCGTCATCATCTGAGACTCGCCAAGCCAATTGGTAGTACTTCTTATCA
TTGCTAGTCAACCAAAGGAGACCACATCGGTTGGTGCAGAAGTTGCAGGT
GAAGAGCTGTTTGGATGTACTGCCACGCCTTTTCACAACCATGAAGTAGT
ACGAGGTATAGAGACATCTGGAGCAGGTGGAGTTCGTGCAGCGGGCGATG
GGTCCATTGTTGATGTGGGAACTGATGTACGGTTCTGGGAGCAGACGATG
CATGGCTACATTCTCATATACGGGCGTGAAGCGGTTCAGCGTCTGCAGAG
CGTGCAGACAGTCATCGTACAGCGAAACGCGGTTCTCCACCGACGGAACC
GGAAATACTGTGCGGGTGCCAACCGGAAGAAGCAACCTGGTGCTGGTCTC
CCAGCTCGCGGACCCAAAACAAACCCTTGCGATGCACGGCGACGGGAGTA
TTCCTCTGGCGGTTGTCGTAAAAGTTTTGATAAAACCTCTCATAGACCAT
GGGTATGTAATTTGATAGCGGTGTTGTGGAAAATGCCCACATGGTTCATG
AACTTTGGAGAGAGCTGCCG
BO14006.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11099-PA | 1137 | CG11099-RA | 702..1134 | 451..19 | 2140 | 99.7 | Minus |
CG11099-PA | 1137 | CG11099-RA | 595..703 | 559..451 | 520 | 99 | Minus |
CG11099-PA | 1137 | CG11099-RA | 550..593 | 605..562 | 170 | 95.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11099-RB | 2173 | CG11099-RB | 793..1391 | 620..19 | 2860 | 98.7 | Minus |
CG11099-RA | 2319 | CG11099-RA | 939..1537 | 620..19 | 2860 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:45:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20237693..20238005 | 491..178 | 1505 | 99.4 | Minus |
2R | 25286936 | 2R | 20238257..20238418 | 180..19 | 810 | 100 | Minus |
2R | 25286936 | 2R | 20237310..20237436 | 620..492 | 485 | 95.3 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:45:42 has no hits.
BO14006.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:54 Download gff for
BO14006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-PA | 536..1137 | 18..620 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:23 Download gff for
BO14006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-PA | 536..1137 | 18..620 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:25:01 Download gff for
BO14006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-RA | 939..1544 | 12..620 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:40:43 Download gff for
BO14006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-RA | 939..1544 | 12..620 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:40:43 Download gff for
BO14006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20237310..20237436 | 492..620 | 95 | -> | Minus |
2R | 20237693..20238004 | 179..491 | 99 | -> | Minus |
2R | 20238259..20238425 | 12..178 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:25:01 Download gff for
BO14006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16124815..16124941 | 492..620 | 95 | -> | Minus |
arm_2R | 16125198..16125509 | 179..491 | 99 | -> | Minus |
arm_2R | 16125764..16125930 | 12..178 | 98 | | Minus |
BO14006.5prime Sequence
660 bp (637 high quality bases) assembled on 2006-05-29
> BO14006.5prime
GAAGTTATCACCCGACATGAACAAAACGATTCTGCACTGGAGCTACCTGA
ATTTCAAGGATGTCCCGATGGATCTGTTCCTCTACGAGGATCTCGAGGAA
GTCTACCTCAAGGAGAACTTCATCTCGGTGATACCCAAATGGCTGCTGAA
CATCACCACACTGAAGTTTATTCATTTGGCTGGCAATAATCTGAGTGAAC
TGCCGGTGGACATCTATATGCTGGAGAATCTGGAGTTCCTGGACGTATCC
AACAATGAGCTCAAGGAGCTGCCCCCCACACTGGGTCTCCTGTTGAATCT
CCAGCAGCTGAATGTGTCGGGGAATCAGCTCACCGAACTACCAGTGGAGC
TAAGTGGTTTGCGCAATCTGGAGCACCTGAACATTGGCAAGAACCAATTT
CGACGCCTGCCGGTTCAGCTGAGCGAGTGCGTCCGCCTCAACGAGCTGAA
TGTGAGCGACAACGAGGCGCTTGTCCACATCCCCGAGCGCATCTCCAACC
TGCCCATGCTGCAGTCCCTCGCCGCAGATCGTTGTGCGCTCGTCTACTTG
CCGGCAGCTCTCTCCAAGTTCATGAACCATGTGCGCATTCTTCCACAACA
CCGCTATCAACTACATACCCATGGTCTATGAGAGGTTCTATCAAAACTTT
TACCACAACC
BO14006.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11099-PA | 1137 | CG11099-RA | 1..572 | 17..588 | 2860 | 100 | Plus |
CG11099-PA | 1137 | CG11099-RA | 572..643 | 589..660 | 335 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11099-RB | 2173 | CG11099-RB | 258..900 | 17..660 | 3180 | 99.7 | Plus |
CG11099-RA | 2319 | CG11099-RA | 404..1046 | 17..660 | 3180 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20236638..20236968 | 17..347 | 1655 | 100 | Plus |
2R | 25286936 | 2R | 20237026..20237211 | 347..532 | 930 | 100 | Plus |
2R | 25286936 | 2R | 20237289..20237417 | 531..660 | 585 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:14:04 has no hits.
BO14006.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:55 Download gff for
BO14006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-PA | 1..643 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:24 Download gff for
BO14006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-PA | 1..643 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:00:34 Download gff for
BO14006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-RA | 404..1046 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:48:37 Download gff for
BO14006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-RA | 404..1046 | 17..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:48:37 Download gff for
BO14006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20236638..20236968 | 17..347 | 100 | -> | Plus |
2R | 20237027..20237209 | 348..530 | 100 | -> | Plus |
2R | 20237289..20237417 | 531..660 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:00:34 Download gff for
BO14006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16124143..16124473 | 17..347 | 100 | -> | Plus |
arm_2R | 16124532..16124714 | 348..530 | 100 | -> | Plus |
arm_2R | 16124794..16124922 | 531..660 | 98 | | Plus |
BO14006.complete Sequence
1168 bp assembled on 2008-08-14
GenBank Submission: FJ638723
> BO14006.complete
GAAGTTATCACCCGACATGAACAAAACGATTCTGCACTGGAGCTACCTGA
ATTTCAAGGATGTCCCGATGGATCTGTTCCTCTACGAGGATCTCGAGGAA
GTCTACCTCAAGGAGAACTTCATCTCGGTGATACCCAAATGGCTGCTGAA
CATCACCACACTGAAGTTTATTCATTTGGCTGGCAATAATCTGAGTGAAC
TGCCGGTGGACATCTATATGCTGGAGAATCTGGAGTTCCTGGACGTATCC
AACAATGAGCTCAAGGAGCTGCCCCCCACACTGGGTCTCCTGTTGAATCT
CCAGCAGCTGAATGTGTCGGGGAATCAGCTCACCGAACTACCAGTGGAGC
TAAGTGGTTTGCGCAATCTGGAGCACCTGAACATTGGCAAGAACCAATTT
CGACGCCTGCCGGTTCAGCTGAGCGAGTGCGTCCGCCTCAACGAGCTGAA
TGTGAGCGACAACGAGGCGCTTGTCCACATCCCCGAGCGCATCTCCAACC
TGCCCATGCTGCAGTCCCTCGCCGCAGATCGTTGTGCGCTCGTCTACTTG
CCGGCAGCTCTCTCCAAGTTCATGAACCATGTGCGCATCTTCCACAACAC
CGCTATCAACTACATACCCATGGTCTATGAGAGGTTCTATCAAAACTTTT
ACGACAACCGCCAGAGGAATACTCCCGTCGCCGTGCATCGCAAGGGTTTG
TTTTGGGTCCGCGAGCTGGAGACCAGCACCAGGTTGCTTCTTCCGGTTGG
CACCCGCACAGTATTTCCGGTTCCGTCGGTGGAGAACCGCGTTTCGCTCT
ACGATGACTGTCTGCACGCTCTGCAGACGCTGAACCGCTTCACGCCCGTA
TATGAGAATGTAGCCATGCATCGTCTGCTCCCAGAACCGTACATCAGTTC
CCACATCAACAATGGACCCATCGCCCGCTGCACGAACTCCACCTGCTCCA
GATGTCTCTATACCTCGTACTACTTCATGGTTGTGAAAAGGCGTGGCAGT
ACATCCAAACAGCTCTTCACCTGCAACTTCTGCACCAACCGATGTGGTCT
CCTTTGGTTGACTAGCAATGATAAGAAGTACTACCAATTGGCTTGGCGAG
TCTCAGATGATGACGACGATGATGAGGAAGAACACATGGCCAGCAACAAA
GCAAGCTTTCTAGACCAT
BO14006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11099-RB | 1137 | CG11099-PB | 1..1134 | 17..1150 | 5670 | 100 | Plus |
CG11099-RA | 1137 | CG11099-PA | 1..1134 | 17..1150 | 5670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11099-RB | 2173 | CG11099-RB | 258..1391 | 17..1150 | 5670 | 100 | Plus |
CG11099-RA | 2319 | CG11099-RA | 404..1537 | 17..1150 | 5670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:34:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20236638..20236968 | 17..347 | 1655 | 100 | Plus |
2R | 25286936 | 2R | 20237693..20238005 | 679..991 | 1565 | 100 | Plus |
2R | 25286936 | 2R | 20237026..20237211 | 347..532 | 930 | 100 | Plus |
2R | 25286936 | 2R | 20238257..20238418 | 989..1150 | 810 | 100 | Plus |
2R | 25286936 | 2R | 20237289..20237436 | 531..678 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:34:59 has no hits.
BO14006.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:00 Download gff for
BO14006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-RA | 404..1544 | 17..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:13 Download gff for
BO14006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-RA | 404..1537 | 17..1152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:36 Download gff for
BO14006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-RA | 404..1537 | 17..1152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:51 Download gff for
BO14006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11099-RA | 404..1537 | 17..1152 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:51 Download gff for
BO14006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20237693..20238004 | 679..990 | 100 | -> | Plus |
2R | 20238259..20238418 | 991..1152 | 98 | | Plus |
2R | 20236638..20236968 | 17..347 | 100 | -> | Plus |
2R | 20237027..20237209 | 348..530 | 100 | -> | Plus |
2R | 20237289..20237436 | 531..678 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:13 Download gff for
BO14006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16124143..16124473 | 17..347 | 100 | -> | Plus |
arm_2R | 16124532..16124714 | 348..530 | 100 | -> | Plus |
arm_2R | 16124794..16124941 | 531..678 | 100 | -> | Plus |
arm_2R | 16125198..16125509 | 679..990 | 100 | -> | Plus |
arm_2R | 16125764..16125923 | 991..1152 | 98 | | Plus |
BO14006.pep Sequence
Translation from 16 to 1168
> BO14006.pep
MNKTILHWSYLNFKDVPMDLFLYEDLEEVYLKENFISVIPKWLLNITTLK
FIHLAGNNLSELPVDIYMLENLEFLDVSNNELKELPPTLGLLLNLQQLNV
SGNQLTELPVELSGLRNLEHLNIGKNQFRRLPVQLSECVRLNELNVSDNE
ALVHIPERISNLPMLQSLAADRCALVYLPAALSKFMNHVRIFHNTAINYI
PMVYERFYQNFYDNRQRNTPVAVHRKGLFWVRELETSTRLLLPVGTRTVF
PVPSVENRVSLYDDCLHALQTLNRFTPVYENVAMHRLLPEPYISSHINNG
PIARCTNSTCSRCLYTSYYFMVVKRRGSTSKQLFTCNFCTNRCGLLWLTS
NDKKYYQLAWRVSDDDDDDEEEHMASNKASFLDH
BO14006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11099-PB | 378 | CG11099-PB | 1..378 | 1..378 | 2002 | 100 | Plus |
CG11099-PA | 378 | CG11099-PA | 1..378 | 1..378 | 2002 | 100 | Plus |
scrib-PC | 1247 | CG43398-PC | 130..375 | 2..243 | 257 | 29 | Plus |
scrib-PI | 1711 | CG43398-PI | 130..375 | 2..243 | 257 | 29 | Plus |
scrib-PP | 1729 | CG43398-PP | 130..375 | 2..243 | 257 | 29 | Plus |
scrib-PC | 1247 | CG43398-PC | 22..262 | 10..245 | 219 | 29.1 | Plus |
scrib-PI | 1711 | CG43398-PI | 22..262 | 10..245 | 219 | 29.1 | Plus |
scrib-PC | 1247 | CG43398-PC | 97..265 | 15..184 | 204 | 32.4 | Plus |
scrib-PI | 1711 | CG43398-PI | 97..265 | 15..184 | 204 | 32.4 | Plus |
scrib-PC | 1247 | CG43398-PC | 121..291 | 16..187 | 203 | 32 | Plus |
scrib-PI | 1711 | CG43398-PI | 121..291 | 16..187 | 203 | 32 | Plus |
scrib-PC | 1247 | CG43398-PC | 290..396 | 24..131 | 168 | 38.9 | Plus |
scrib-PI | 1711 | CG43398-PI | 290..396 | 24..131 | 168 | 38.9 | Plus |